Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G297600 Glycine max HOM05D007605 ORTHO05D009572 3.0e-31 137.9 69 100.0
Glyma.08G364500 Glycine max HOM05D007605 ORTHO05D009572 3.3e-30 134.4 69 97.1
VMungo1383G0010 Vigna mungo HOM05D003647 ORTHO05D004182 1.4e-28 129.0 67 94.0
Glyma.19G073500 Glycine max HOM05D007605 ORTHO05D009572 5.8e-27 123.6 69 89.9
Phvul.008G005000 Phaseolus vulgaris HOM05D007605 ORTHO05D009572 7.6e-27 123.2 69 88.4
Ca_14651_v3 Cicer arietinum L. HOM05D007605 ORTHO05D009572 4.9e-26 120.6 69 85.5
Lj6g0016727 Lotus japonicus HOM05D007605 ORTHO05D009572 4.9e-26 120.6 69 85.5
Lj1g0002800 Lotus japonicus HOM05D007605 ORTHO05D009572 6.4e-26 120.2 69 85.5
Lj6g0006319 Lotus japonicus HOM05D007605 ORTHO05D009572 6.4e-26 120.2 69 85.5
arahy.Tifrunner.gnm1.ann1.FBG7WK Arachis hypogaea HOM05D007605 ORTHO05D009572 1.1e-25 119.4 70 87.1
Ca_08431_v3 Cicer arietinum L. HOM05D007605 ORTHO05D009572 1.1e-25 119.4 69 84.1
Lj1g0021920 Lotus japonicus HOM05D007605 ORTHO05D009572 2.4e-25 118.2 69 84.1
arahy.Tifrunner.gnm1.ann1.MPL0H7 Arachis hypogaea HOM05D007605 ORTHO05D009572 5.4e-25 117.1 68 86.8
Glyma.19G030600 Glycine max HOM05D007605 ORTHO05D009572 5.4e-25 117.1 69 87.0
Medtr7g091060 Medicago truncatula HOM05D007605 ORTHO05D009572 1.3e-23 112.5 69 78.3
TPR.G18242 Trifolium pratense HOM05D007605 ORTHO05D009572 3.9e-23 110.9 70 80.0
Haze_00851 Corylus avellana HOM05D007605 ORTHO05D009572 6.6e-23 110.2 69 79.7
Cfa015674 Carpinus fangiana HOM05D007605 ORTHO05D009572 8.6e-23 109.8 69 79.7
Psat3g074320 Pisum sativum HOM05D007605 ORTHO05D009572 3.3e-22 107.8 69 75.4
RcHm_v2.0_Chr4g0405791 Rosa chinensis HOM05D007605 ORTHO05D009572 3.3e-22 107.8 69 73.9
FAN05G3507 Fragaria x ananassa HOM05D007605 ORTHO05D009572 1.6e-21 105.5 69 72.5
RcHm_v2.0_Chr7g0232231 Rosa chinensis HOM05D007605 ORTHO05D009572 1.6e-21 105.5 69 72.5
SGA_v2.0_scaffold25G11005 Striga asiatica HOM05D000384 ORTHO05D009572 1.6e-21 105.5 69 73.9
CANSAT01G0287 Cannabis sativa HOM05D007605 ORTHO05D009572 2.1e-21 105.1 69 73.9
Thecc.04G164300 Theobroma cacao HOM05D007605 ORTHO05D009572 2.8e-21 104.8 69 81.2
FAN05G0946 Fragaria x ananassa HOM05D007605 ORTHO05D009572 4.7e-21 104.0 68 70.6
FAN14G0446 Fragaria x ananassa HOM05D007605 ORTHO05D009572 4.7e-21 104.0 69 71.0
Prupe.4G204500 Prunus persica HOM05D007605 ORTHO05D009572 4.7e-21 104.0 69 71.0
Cpa.g.sc9.378 Carica papaya HOM05D007605 ORTHO05D009572 1.1e-20 102.8 69 76.8
MD03G1210800 Malus domestica HOM05D007605 ORTHO05D009572 1.4e-20 102.4 69 71.0
Rhsim09G0008600 Rhododendron simsii HOM05D007605 ORTHO05D009572 1.8e-20 102.1 69 75.4
FvH4_6g21131 Fragaria vesca HOM05D007605 ORTHO05D009572 2.4e-20 101.7 67 70.1
TWI63G1406 Tripterygium wilfordii HOM05D007605 ORTHO05D009572 4.0e-20 100.9 67 77.6
Migut.N03059 Erythranthe guttata HOM05D007605 ORTHO05D009572 5.2e-20 100.5 69 71.0
MD11G1225700 Malus domestica HOM05D007605 ORTHO05D009572 5.2e-20 100.5 69 71.0
Potri.019G096700 Populus trichocarpa HOM05D007605 ORTHO05D009572 5.2e-20 100.5 66 74.2
SalBow6G4154 Salvia bowleyana HOM05D007605 ORTHO05D009572 5.2e-20 100.5 69 71.0
MELO3C011854.2 Cucumis melo HOM05D007605 ORTHO05D009572 6.9e-20 100.1 61 80.3
CiPaw.01G168900 Carya illinoinensis HOM05D007605 ORTHO05D009572 8.9e-20 99.8 61 82.0
Duzib212G0337 Durio zibethinus HOM05D007605 ORTHO05D009572 8.9e-20 99.8 69 76.8
Nn1g09550 Nelumbo nucifera HOM05D007605 ORTHO05D009572 8.9e-20 99.8 67 71.6
Potri.019G096500 Populus trichocarpa HOM05D007605 ORTHO05D009572 8.9e-20 99.8 64 75.0
Lalb_Chr04g0257371 Lupinus albus HOM05D007605 ORTHO05D009572 1.2e-19 99.4 57 84.2
Sabra19G0108500 Salix brachista HOM05D000005 ORTHO05D000012 2.0e-19 98.6 66 72.7
DCAR_030842 Daucus carota HOM05D007605 ORTHO05D009572 3.4e-19 97.8 64 71.9
PGR142G0642 Punica granatum HOM05D007605 ORTHO05D009572 5.8e-19 97.1 64 71.9
Sed0018718 Sechium edule HOM05D007605 ORTHO05D009572 5.8e-19 97.1 62 74.2
THA.LOC104802329 Tarenaya hassleriana HOM05D007605 ORTHO05D009572 5.8e-19 97.1 69 72.5
Atru.chr4.1455 Acer truncatum HOM05D007605 ORTHO05D009572 7.6e-19 96.7 59 78.0
CSS0027032 Camellia sinensis var. sinensis HOM05D007605 ORTHO05D009572 7.6e-19 96.7 58 81.0
CSS0028313 Camellia sinensis var. sinensis HOM05D007605 ORTHO05D009572 7.6e-19 96.7 58 81.0
Carub.0004s2631 Capsella rubella HOM05D007605 ORTHO05D009572 9.9e-19 96.3 69 73.9
Sc13g0006890 Simmondsia chinensis HOM05D007605 ORTHO05D009572 9.9e-19 96.3 63 74.6
AL4G42650 Arabidopsis lyrata HOM05D007605 ORTHO05D009572 2.2e-18 95.1 69 73.9
Nitab4.5_0007474g0060 Nicotiana tabacum HOM05D007605 ORTHO05D009572 2.2e-18 95.1 67 68.7
Sabra13G0106700 Salix brachista HOM05D007605 ORTHO05D009572 2.2e-18 95.1 66 69.7
AT2G43780 Arabidopsis thaliana HOM05D007605 ORTHO05D009572 3.8e-18 94.4 69 72.5
Eucgr.H04449 Eucalyptus grandis HOM05D007605 ORTHO05D009572 3.8e-18 94.4 57 82.5
Manes.05G136900 Manihot esculenta HOM05D007605 ORTHO05D009572 3.8e-18 94.4 59 76.3
Manes.08G010900 Manihot esculenta HOM05D007605 ORTHO05D009572 3.8e-18 94.4 59 76.3
Peaxi162Scf00579g00018 Petunia axillaris HOM05D007605 ORTHO05D009572 4.9e-18 94.0 67 68.7
Ciclev10023247m.g Citrus clementina HOM05D007605 ORTHO05D009572 6.4e-18 93.6 59 74.6
Gohir.A10G144600 Gossypium hirsutum HOM05D007605 ORTHO05D009572 6.4e-18 93.6 60 80.0
Sopen06g018580 Solanum pennellii HOM05D007605 ORTHO05D009572 6.4e-18 93.6 67 67.2
COL.COLO4_38114 Corchorus olitorius HOM05D007605 ORTHO05D009572 8.4e-18 93.2 55 83.6
Nitab4.5_0004700g0030 Nicotiana tabacum HOM05D001130 ORTHO05D001052 8.4e-18 93.2 67 67.2
PGSC0003DMG400016297 Solanum tuberosum HOM05D007605 ORTHO05D009572 8.4e-18 93.2 67 67.2
Sp4g25850 Schrenkiella parvula HOM05D007605 ORTHO05D009572 2.4e-17 91.7 69 69.6
Atru.chr12.2308 Acer truncatum HOM05D007605 ORTHO05D009572 4.2e-17 90.9 59 74.6
CARHR138960 Cardamine hirsuta HOM05D007605 ORTHO05D009572 5.4e-17 90.5 69 69.6
Glyma.17G205632 Glycine max HOM05D007605 ORTHO05D009572 5.4e-17 90.5 61 73.8
Aa31LG1G25490 Aethionema arabicum HOM05D005323 ORTHO05D006820 9.3e-17 89.7 55 81.8
AUR62002411 Chenopodium quinoa HOM05D007605 ORTHO05D009572 9.3e-17 89.7 58 72.4
Thhalv10001711m.g Eutrema salsugineum HOM05D007605 ORTHO05D009572 1.2e-16 89.4 69 69.6
MBI07_g11492_MAGBIO Magnolia biondii HOM05D007605 ORTHO05D009572 1.2e-16 89.4 59 74.6
ECA248G2718 Erigeron canadensis HOM05D007605 ORTHO05D009572 1.6e-16 89.0 57 73.7
Ah.07g202920 Amaranthus hybridus HOM05D007605 ORTHO05D009572 2.1e-16 88.6 55 76.4
EL10Ac3g06103 Beta vulgaris HOM05D007605 ORTHO05D009572 2.1e-16 88.6 63 68.3
Aqoxy4G02871 Aquilegia oxysepala HOM05D007605 ORTHO05D009572 2.7e-16 88.2 56 73.2
BcaB01g03362 Brassica carinata HOM05D007605 ORTHO05D009572 2.7e-16 88.2 69 68.1
BcaB05g23281 Brassica carinata HOM05D007605 ORTHO05D009572 6.0e-16 87.0 69 65.2
BcaC01g05214 Brassica carinata HOM05D007605 ORTHO05D009572 6.0e-16 87.0 69 66.7
C03p29150 Brassica napus HOM05D007605 ORTHO05D009572 6.0e-16 87.0 69 66.7
BolC3t15267H Brassica oleracea HOM05D007605 ORTHO05D009572 6.0e-16 87.0 69 66.7
Os12g0611700 Oryza sativa ssp. japonica HOM05D007605 ORTHO05D009572 6.0e-16 87.0 60 68.3
PSO573G0041 Papaver somniferum HOM05D007605 ORTHO05D009572 6.0e-16 87.0 59 72.9
A03p24460 Brassica napus HOM05D007605 ORTHO05D009572 7.8e-16 86.7 69 66.7
Gohir.D10G122400 Gossypium hirsutum HOM05D007605 ORTHO05D009572 7.8e-16 86.7 61 77.0
Gorai.011G134700 Gossypium raimondii HOM05D007605 ORTHO05D009572 7.8e-16 86.7 61 77.0
Lsat_1_v5_gn_1_21060 Lactuca sativa HOM05D007605 ORTHO05D009572 7.8e-16 86.7 55 72.7
BraA03t11655Z Brassica rapa HOM05D007605 ORTHO05D009572 2.3e-15 85.1 69 65.2
A05p03980 Brassica napus HOM05D005323 ORTHO05D006820 3.9e-15 84.3 61 72.1
BcaB02g08902 Brassica carinata HOM05D005323 ORTHO05D006820 5.1e-15 84.0 64 68.8
BraA05t19386Z Brassica rapa HOM05D005323 ORTHO05D006820 5.1e-15 84.0 61 72.1
BcaC02g12364 Brassica carinata HOM05D005323 ORTHO05D006820 6.6e-15 83.6 55 74.5
C04p04730 Brassica napus HOM05D005323 ORTHO05D006820 6.6e-15 83.6 55 74.5
BolC4t22103H Brassica oleracea HOM05D005323 ORTHO05D006820 6.6e-15 83.6 55 74.5
Os05g0103800 Oryza sativa ssp. japonica HOM05D007605 ORTHO05D009572 6.6e-15 83.6 60 66.7
ATR0743G065 Amborella trichopoda HOM05D007605 ORTHO05D009572 1.1e-14 82.8 63 60.3
ClCG11G013540 Citrullus lanatus HOM05D007605 ORTHO05D009572 1.1e-14 82.8 52 76.9
QL10p056550 Quercus lobata HOM05D007605 ORTHO05D009572 1.9e-14 82.0 65 66.2
vmacro23387 Vaccinium macrocarpon HOM05D007605 ORTHO05D009572 1.3e-13 79.3 47 80.9
GSVIVG01038176001 Vitis vinifera HOM05D007605 ORTHO05D009572 1.6e-13 79.0 56 66.1
CsaV3_5G030160 Cucumis sativus L. HOM05D007605 ORTHO05D009572 1.1e-12 76.3 47 76.6
Lsat_1_v5_gn_1_74540 Lactuca sativa HOM05D007605 ORTHO05D009572 1.2e-11 72.8 48 68.8
Lj6C218G0 Lonicera japonica HOM05D000384 ORTHO05D000468 1.2e-11 72.8 42 78.6
BcaC05g29066 Brassica carinata HOM05D007605 ORTHO05D009572 1.2e-08 62.8 46 65.2
Mapoly0044s0040 Marchantia polymorpha HOM05D007605 ORTHO05D009572 1.6e-08 62.4 44 65.9
Pp3c9_12740 Physcomitrium patens HOM05D007605 ORTHO05D009572 2.3e-07 58.5 48 58.3


User provided reference genes

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