Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G295700 Glycine max HOM05D004795 ORTHO05D005518 2.1e-118 429.1 224 100.0
Phvul.008G007200 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 1.4e-69 266.9 241 73.0
VMungo1383G1737 Vigna mungo HOM05D004795 ORTHO05D005518 1.1e-66 257.3 228 72.8
Glyma.08G366700 Glycine max HOM05D004795 ORTHO05D005518 4.0e-61 238.8 197 75.1
arahy.Tifrunner.gnm1.ann1.HZ9SBP Arachis hypogaea HOM05D001490 ORTHO05D005518 2.4e-42 176.4 236 55.5
CiPaw.03G062800 Carya illinoinensis HOM05D004795 ORTHO05D005518 3.0e-40 169.5 207 57.5
Cfa007915 Carpinus fangiana HOM05D004795 ORTHO05D005518 3.9e-40 169.1 219 56.2
QL02p051034 Quercus lobata HOM05D004795 ORTHO05D005518 8.7e-40 167.9 216 55.1
QL12p016552 Quercus lobata HOM05D004795 ORTHO05D005518 1.1e-39 167.5 216 54.6
Ca_08078_v3 Cicer arietinum L. HOM05D004795 ORTHO05D005518 2.4e-37 159.8 200 55.0
Lj1g0003158 Lotus japonicus HOM05D004795 ORTHO05D005518 9.0e-37 157.9 191 57.1
Haze_14167 Corylus avellana HOM05D004795 ORTHO05D005518 3.4e-36 156.0 219 53.9
Prupe.3G143600 Prunus persica HOM05D004795 ORTHO05D005518 5.8e-36 155.2 242 50.0
MD17G1245500 Malus domestica HOM05D004795 ORTHO05D005518 9.9e-36 154.5 224 50.4
RcHm_v2.0_Chr2g0148201 Rosa chinensis HOM05D004795 ORTHO05D005518 4.9e-35 152.1 218 53.7
MD09G1253700 Malus domestica HOM05D004795 ORTHO05D005518 1.4e-34 150.6 222 50.0
Manes.02G069600 Manihot esculenta HOM05D004795 ORTHO05D005518 1.9e-34 150.2 192 55.7
Thecc.04G132300 Theobroma cacao HOM05D004795 ORTHO05D005518 5.5e-34 148.7 223 51.1
Glyma.13G045200 Glycine max HOM05D004795 ORTHO05D005518 9.3e-34 147.9 243 46.1
Sabra04G0081300 Salix brachista HOM05D004795 ORTHO05D005518 6.0e-33 145.2 192 52.6
CiPaw.04G043000 Carya illinoinensis HOM05D004795 ORTHO05D005518 7.9e-33 144.8 238 49.6
TWI77G0518 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 7.9e-33 144.8 217 52.1
FAN02G3195 Fragaria x ananassa HOM05D004795 ORTHO05D005518 1.3e-32 144.1 217 52.1
Dinv33956 Davidia involucrata HOM05D001490 ORTHO05D001450 1.8e-32 143.7 192 54.2
FvH4_6g36230 Fragaria vesca HOM05D004795 ORTHO05D005518 1.8e-32 143.7 223 51.6
FAN14G2363 Fragaria x ananassa HOM05D004795 ORTHO05D005518 1.8e-32 143.7 222 53.2
FAN14G5069 Fragaria x ananassa HOM05D004795 ORTHO05D005518 1.8e-32 143.7 222 53.2
FAN05G2248 Fragaria x ananassa HOM05D004795 ORTHO05D005518 2.3e-32 143.3 220 51.4
Duzib133G0847 Durio zibethinus HOM05D004795 ORTHO05D005518 3.9e-32 142.5 242 47.9
TWI53G1522 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 5.1e-32 142.1 213 51.6
CANSAT78G0274 Cannabis sativa HOM05D004795 ORTHO05D005518 2.5e-31 139.8 221 48.0
Potri.017G116100 Populus trichocarpa HOM05D004795 ORTHO05D005518 2.5e-31 139.8 216 49.5
Cc07_g08730 Coffea canephora HOM05D004795 ORTHO05D005518 3.3e-31 139.4 198 52.0
Sabra17G0096100 Salix brachista HOM05D004795 ORTHO05D005518 3.3e-31 139.4 216 49.5
VMungo0464G1679 Vigna mungo HOM05D004795 ORTHO05D005518 3.3e-31 139.4 244 43.0
Atru.chr1.1662 Acer truncatum HOM05D004795 ORTHO05D005518 4.3e-31 139.0 241 47.7
Eucgr.J01506 Eucalyptus grandis HOM05D004795 ORTHO05D005518 4.3e-31 139.0 179 54.2
TAR629G1480 Trochodendron aralioides HOM05D004795 ORTHO05D005518 4.3e-31 139.0 189 53.4
Nitab4.5_0000912g0060 Nicotiana tabacum HOM05D004795 ORTHO05D005518 7.4e-31 138.3 211 48.3
PGR004G2449 Punica granatum HOM05D004795 ORTHO05D005518 2.1e-30 136.7 193 52.8
COL.COLO4_09348 Corchorus olitorius HOM05D004795 ORTHO05D005518 2.8e-30 136.3 226 48.2
Duzib211G0180 Durio zibethinus HOM05D004795 ORTHO05D005518 2.8e-30 136.3 238 47.5
ClCG05G012330 Citrullus lanatus HOM05D004795 ORTHO05D005518 4.8e-30 135.6 223 47.5
Peaxi162Scf00394g00712 Petunia axillaris HOM05D004795 ORTHO05D005518 1.1e-29 134.4 193 49.7
CsaV3_3G020240 Cucumis sativus L. HOM05D004795 ORTHO05D005518 1.4e-29 134.0 224 48.7
Cpa.g.sc170.57 Carica papaya HOM05D004795 ORTHO05D005518 1.8e-29 133.7 208 51.9
Ciclev10012794m.g Citrus clementina HOM05D004795 ORTHO05D005518 2.4e-29 133.3 231 45.5
Sopen02g030830 Solanum pennellii HOM05D004795 ORTHO05D005518 2.4e-29 133.3 239 46.0
Manes.01G111300 Manihot esculenta HOM05D004795 ORTHO05D005518 4.0e-29 132.5 190 53.2
CAN.G625.30 Capsicum annuum HOM05D004795 ORTHO05D005518 5.3e-29 132.1 207 49.8
PGSC0003DMG402026390 Solanum tuberosum HOM05D004795 ORTHO05D005518 1.2e-28 131.0 207 50.2
FAN09G4185 Fragaria x ananassa HOM05D004795 ORTHO05D005518 3.4e-28 129.4 224 49.1
Gohir.A11G163900 Gossypium hirsutum HOM05D004795 ORTHO05D005518 3.4e-28 129.4 189 49.2
Lalb_Chr10g0091311 Lupinus albus HOM05D004795 ORTHO05D005518 4.5e-28 129.0 196 52.6
Psat3g098240 Pisum sativum HOM05D004795 ORTHO05D005518 5.8e-28 128.6 201 49.3
Duzib138G0938 Durio zibethinus HOM05D004795 ORTHO05D005518 7.6e-28 128.3 241 46.1
TAR622G0902 Trochodendron aralioides HOM05D004795 ORTHO05D005518 1.3e-27 127.5 229 47.2
Nn3g17899 Nelumbo nucifera HOM05D004795 ORTHO05D005518 1.7e-27 127.1 188 52.1
Gorai.007G182000 Gossypium raimondii HOM05D004795 ORTHO05D005518 2.2e-27 126.7 189 49.2
Lj2g0010000 Lotus japonicus HOM05D004795 ORTHO05D005518 2.2e-27 126.7 189 49.7
TPR.G31528 Trifolium pratense HOM05D004795 ORTHO05D005518 2.2e-27 126.7 203 47.3
Gohir.D11G325800 Gossypium hirsutum HOM05D004795 ORTHO05D005518 4.9e-27 125.6 195 49.7
Phvul.004G066100 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 8.4e-27 124.8 235 42.6
Glyma.19G049900 Glycine max HOM05D004795 ORTHO05D005518 1.4e-26 124.0 232 40.5
THA.LOC104805574 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 9.3e-26 121.3 239 41.4
Gohir.D11G326300 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.2e-25 120.9 196 49.5
Aa31LG9G17140 Aethionema arabicum HOM05D004795 ORTHO05D005518 7.9e-25 118.2 241 40.7
Carub.0002s1332 Capsella rubella HOM05D004795 ORTHO05D005518 7.9e-25 118.2 240 38.8
AT1G67035 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 1.3e-24 117.5 244 41.0
Rhsim10G0068600 Rhododendron simsii HOM05D004795 ORTHO05D005518 1.3e-24 117.5 207 46.9
Sed0015257 Sechium edule HOM05D004795 ORTHO05D005518 1.3e-24 117.5 193 48.7
Gohir.D11G325700 Gossypium hirsutum HOM05D004795 ORTHO05D005518 2.3e-24 116.7 182 50.0
BraA02t06447Z Brassica rapa HOM05D004795 ORTHO05D005518 3.0e-24 116.3 212 41.0
MELO3C023735.2 Cucumis melo HOM05D004795 ORTHO05D005518 1.1e-23 114.4 199 47.2
Oeu039734.1 Olea europaea HOM05D004795 ORTHO05D005518 1.1e-23 114.4 220 45.0
Gohir.D11G170200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.9e-23 113.6 248 38.3
Thhalv10019032m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 2.5e-23 113.2 223 39.9
Sp5g21970 Schrenkiella parvula HOM05D004795 ORTHO05D005518 4.3e-23 112.5 220 41.4
BcaB06g27183 Brassica carinata HOM05D004795 ORTHO05D005518 5.7e-23 112.1 214 41.1
THA.LOC104822635 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 5.7e-23 112.1 215 41.4
Aa31LG2G3430 Aethionema arabicum HOM05D004795 ORTHO05D005518 9.6e-23 111.3 242 36.8
DCAR_025909 Daucus carota HOM05D004795 ORTHO05D005518 9.6e-23 111.3 195 48.2
TAR371G0696 Trochodendron aralioides HOM05D004795 ORTHO05D005518 9.6e-23 111.3 170 51.2
Ah.16g101690 Amaranthus hybridus HOM05D004795 ORTHO05D005518 2.1e-22 110.2 218 39.4
MSTRG.3555 Avicennia marina HOM05D004795 ORTHO05D005518 2.1e-22 110.2 196 45.9
BcaC02g09641 Brassica carinata HOM05D004795 ORTHO05D005518 2.8e-22 109.8 243 39.5
BolC4t26077H Brassica oleracea HOM05D004795 ORTHO05D005518 2.8e-22 109.8 243 39.5
Medtr6g018780 Medicago truncatula HOM05D004795 ORTHO05D005518 3.7e-22 109.4 125 56.8
A07p33770 Brassica napus HOM05D004795 ORTHO05D005518 4.8e-22 109.0 204 41.2
Lalb_Chr02g0158191 Lupinus albus HOM05D004795 ORTHO05D005518 6.3e-22 108.6 209 45.0
Medtr7g082230 Medicago truncatula HOM05D004795 ORTHO05D005518 1.1e-21 107.8 200 44.5
A04p11270 Brassica napus HOM05D004795 ORTHO05D005518 1.4e-21 107.5 216 41.7
BraA04t16787Z Brassica rapa HOM05D004795 ORTHO05D005518 1.4e-21 107.5 216 41.7
C02p22330 Brassica napus HOM05D004795 ORTHO05D005518 1.8e-21 107.1 199 38.2
BraA07t31003Z Brassica rapa HOM05D004795 ORTHO05D005518 2.4e-21 106.7 205 41.5
Sc11g0008370 Simmondsia chinensis HOM05D004795 ORTHO05D005518 2.4e-21 106.7 196 44.9
AL2G25370 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 3.1e-21 106.3 205 41.0
C04p44990 Brassica napus HOM05D004795 ORTHO05D005518 3.1e-21 106.3 239 37.2
PGR042G3836 Punica granatum HOM05D004795 ORTHO05D005518 4.5e-20 102.4 216 43.5
BcaB05g24226 Brassica carinata HOM05D004795 ORTHO05D005518 5.9e-20 102.1 214 39.7
Thhalv10027906m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 5.9e-20 102.1 238 39.1
BolC2t08386H Brassica oleracea HOM05D004795 ORTHO05D005518 7.6e-20 101.7 208 38.0
AL7G52500 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 1.0e-19 101.3 258 35.3
Hma1.2p1_1109F.1_g258120 Hydrangea macrophylla HOM05D004795 ORTHO05D005518 1.3e-19 100.9 210 42.4
Sp7g03720 Schrenkiella parvula HOM05D004795 ORTHO05D005518 2.2e-19 100.1 233 35.6
BcaC03g14785 Brassica carinata HOM05D004795 ORTHO05D005518 2.9e-19 99.8 211 37.0
Lsat_1_v5_gn_4_154580 Lactuca sativa HOM05D004795 ORTHO05D005518 2.9e-19 99.8 236 38.6
Oeu050378.1 Olea europaea HOM05D004795 ORTHO05D005518 5.0e-19 99.0 192 42.7
AT5G38300 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 6.5e-19 98.6 277 34.3
C06p43160 Brassica napus HOM05D004795 ORTHO05D005518 6.5e-19 98.6 248 35.9
BolC6t39123H Brassica oleracea HOM05D004795 ORTHO05D005518 1.1e-18 97.8 204 37.3
Migut.L00330 Erythranthe guttata HOM05D004795 ORTHO05D005518 1.1e-18 97.8 209 38.8
Solyc02g086140.2 Solanum lycopersicum HOM05D004795 ORTHO05D005518 1.1e-18 97.8 140 50.7
Carub.0005s1274 Capsella rubella HOM05D004795 ORTHO05D005518 1.9e-18 97.1 239 36.0
Oeu016627.1 Olea europaea HOM05D004795 ORTHO05D005518 1.9e-18 97.1 181 45.3
CARHR059450 Cardamine hirsuta HOM05D004795 ORTHO05D005518 2.5e-18 96.7 207 37.7
CARHR214290 Cardamine hirsuta HOM05D004795 ORTHO05D005518 4.2e-18 95.9 222 38.3
HanXRQChr11g0325401 Helianthus annuus HOM05D004795 ORTHO05D005518 1.2e-17 94.4 193 42.5
HanXRQChr11g0330661 Helianthus annuus HOM05D004795 ORTHO05D005518 1.6e-17 94.0 182 43.4
SGA_v2.0_scaffold115G32104 Striga asiatica HOM05D004795 ORTHO05D005518 2.7e-17 93.2 220 37.3
Gorai.008G056400 Gossypium raimondii HOM05D004795 ORTHO05D005518 5.1e-16 89.0 198 40.9
TPR.G32442 Trifolium pratense HOM05D004795 ORTHO05D005518 5.1e-16 89.0 125 48.8
Aqoxy3G00247 Aquilegia oxysepala HOM05D004795 ORTHO05D005518 6.7e-16 88.6 233 37.8
Psat1g081000 Pisum sativum HOM05D004795 ORTHO05D005518 1.1e-15 87.8 246 36.2
Gohir.D12G053200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.9e-15 87.0 198 40.4
ECA232G0641 Erigeron canadensis HOM05D000072 ORTHO05D000026 5.7e-15 85.5 177 42.9
Nitab4.5_0004416g0090 Nicotiana tabacum HOM05D004795 ORTHO05D005518 2.2e-14 83.6 176 42.0
AUR62043981 Chenopodium quinoa HOM05D004795 ORTHO05D005518 3.7e-14 82.8 284 30.3
Gohir.A12G054400 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.1e-13 81.3 199 37.7
BcaNung06250 Brassica carinata HOM05D004795 ORTHO05D005518 1.8e-13 80.5 219 35.6
PSO541G1476 Papaver somniferum HOM05D004795 ORTHO05D005518 3.1e-13 79.7 166 37.3
Gorai.001G202200 Gossypium raimondii HOM05D004795 ORTHO05D005518 5.3e-13 79.0 140 46.4
PSO541G4271 Papaver somniferum HOM05D004795 ORTHO05D005518 6.9e-13 78.6 166 38.0
AUR62023290 Chenopodium quinoa HOM05D004795 ORTHO05D005518 9.0e-13 78.2 123 45.5
AUR62009011 Chenopodium quinoa HOM05D004795 ORTHO05D005518 2.0e-12 77.0 111 47.7
MBI09_g36997_MAGBIO Magnolia biondii HOM05D004795 ORTHO05D005518 2.6e-12 76.6 189 40.2
PSO532G0010 Papaver somniferum HOM05D004795 ORTHO05D005518 3.4e-12 76.3 166 37.3
Thecc.07G096700 Theobroma cacao HOM05D004795 ORTHO05D002259 2.5e-10 70.1 113 47.8
Potri.004G098200 Populus trichocarpa HOM05D004795 ORTHO05D005518 4.2e-10 69.3 92 54.3
Gorai.007G356700 Gossypium raimondii HOM05D004795 ORTHO05D005518 2.7e-09 66.6 153 40.5
CAN.G358.61 Capsicum annuum HOM05D004795 ORTHO05D005518 4.6e-09 65.9 97 50.5
unitig_32.g11886 Utricularia gibba HOM05D004795 ORTHO05D005518 1.0e-08 64.7 167 37.1
Ah.06g188560 Amaranthus hybridus HOM05D004795 ORTHO05D005518 1.4e-08 64.3 157 35.0
SalBow5G0757 Salvia bowleyana HOM05D004795 ORTHO05D005518 5.7e-07 58.9 89 50.6
SalBow7G1622 Salvia bowleyana HOM05D004795 ORTHO05D005518 2.2e-06 57.0 128 40.6
SalBow7G4115 Salvia bowleyana HOM05D004795 ORTHO05D005518 2.2e-06 57.0 128 40.6
ATR0752G028 Amborella trichopoda HOM05D004795 ORTHO05D005518 4.8e-06 55.8 200 33.5


User provided reference genes

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