Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G293600 Glycine max HOM05D004062 ORTHO05D004417 1.4e-69 266.2 136 100.0
Glyma.02G089400 Glycine max HOM05D004062 ORTHO05D004417 2.4e-61 238.8 135 89.6
VMungo1383G0607 Vigna mungo HOM05D004062 ORTHO05D004417 4.8e-49 198.0 136 72.8
Phvul.008G008700 Phaseolus vulgaris HOM05D004062 ORTHO05D004417 6.7e-43 177.6 136 66.9
Lj1g0013725 Lotus japonicus HOM05D004062 ORTHO05D004417 3.3e-42 175.3 137 66.4
Lj1g0027246 Lotus japonicus HOM05D004062 ORTHO05D004417 6.9e-40 167.5 136 66.9
Medtr7g082730 Medicago truncatula HOM05D004062 ORTHO05D004417 1.5e-39 166.4 127 70.1
Medtr7g082740 Medicago truncatula HOM05D004062 ORTHO05D004417 1.9e-37 159.5 129 69.0
Medtr7g082700 Medicago truncatula HOM05D004062 ORTHO05D004417 3.2e-37 158.7 129 69.0
arahy.Tifrunner.gnm1.ann1.56V7KA Arachis hypogaea HOM05D004062 ORTHO05D004417 1.6e-36 156.4 142 62.7
arahy.Tifrunner.gnm1.ann1.RE711V Arachis hypogaea HOM05D004062 ORTHO05D004417 1.6e-36 156.4 142 62.7
Lalb_Chr17g0335981 Lupinus albus HOM05D004062 ORTHO05D004417 1.6e-36 156.4 137 63.5
Glyma.18G293500 Glycine max HOM05D004062 ORTHO05D004417 1.3e-35 153.3 140 61.4
Glyma.02G089500 Glycine max HOM05D004062 ORTHO05D004417 2.3e-35 152.5 142 61.3
Ca_08095_v3 Cicer arietinum L. HOM05D004062 ORTHO05D004417 1.9e-34 149.4 129 66.7
Lalb_Chr04g0257671 Lupinus albus HOM05D004062 ORTHO05D004417 3.3e-34 148.7 136 62.5
Lj1g0017758 Lotus japonicus HOM05D004062 ORTHO05D004417 4.3e-34 148.3 146 60.3
Psat3g097360 Pisum sativum HOM05D004062 ORTHO05D004417 5.6e-34 147.9 128 64.8
Phvul.008G008800 Phaseolus vulgaris HOM05D004062 ORTHO05D004417 8.2e-33 144.1 139 59.0
VMungo1383G2158 Vigna mungo HOM05D004062 ORTHO05D004417 1.1e-32 143.7 139 59.0
Ca_08096_v3 Cicer arietinum L. HOM05D004062 ORTHO05D004417 3.1e-32 142.1 129 63.6
Thecc.04G128000 Theobroma cacao HOM05D004062 ORTHO05D004417 1.0e-30 137.1 130 52.3
Psat3g097320 Pisum sativum HOM05D004062 ORTHO05D004417 2.2e-30 136.0 122 64.8
arahy.Tifrunner.gnm1.ann1.95RUG0 Arachis hypogaea HOM05D004062 ORTHO05D004417 2.9e-30 135.6 134 59.0
arahy.Tifrunner.gnm1.ann1.EB5M6E Arachis hypogaea HOM05D004062 ORTHO05D004417 2.9e-30 135.6 134 59.0
Dinv34790 Davidia involucrata HOM05D002710 ORTHO05D002905 1.9e-29 132.9 125 58.4
Duzib138G0221 Durio zibethinus HOM05D004062 ORTHO05D004417 5.5e-29 131.3 125 55.2
Haze_14190 Corylus avellana HOM05D004062 ORTHO05D004417 9.3e-29 130.6 134 56.7
Gohir.A11G166400 Gossypium hirsutum HOM05D004062 ORTHO05D004417 9.3e-29 130.6 130 50.0
COL.COLO4_09380 Corchorus olitorius HOM05D004062 ORTHO05D004417 1.6e-28 129.8 135 50.4
Nn4g23971 Nelumbo nucifera HOM05D004062 ORTHO05D004417 2.7e-28 129.0 134 56.7
TPR.G16550 Trifolium pratense HOM05D004062 ORTHO05D004417 3.5e-28 128.6 129 61.2
Medtr7g082750 Medicago truncatula HOM05D004062 ORTHO05D004417 1.0e-27 127.1 138 55.1
Psat3g097280 Pisum sativum HOM05D004062 ORTHO05D004417 3.9e-27 125.2 137 52.6
TPR.G16561 Trifolium pratense HOM05D004062 ORTHO05D004417 8.7e-27 124.0 130 59.2
QL02p050215 Quercus lobata HOM05D004062 ORTHO05D004417 1.9e-26 122.9 132 54.5
Gohir.D11G172800 Gossypium hirsutum HOM05D004062 ORTHO05D004417 2.5e-26 122.5 130 50.0
Nn3g17968 Nelumbo nucifera HOM05D004062 ORTHO05D004417 3.3e-26 122.1 124 54.0
Gohir.D11G172400 Gossypium hirsutum HOM05D004062 ORTHO05D004417 4.3e-26 121.7 130 50.0
CiPaw.04G044300 Carya illinoinensis HOM05D004062 ORTHO05D004417 5.7e-26 121.3 131 54.2
TPR.G16541 Trifolium pratense HOM05D004062 ORTHO05D004417 7.4e-26 120.9 138 57.2
Gorai.007G185100 Gossypium raimondii HOM05D004062 ORTHO05D004417 9.7e-26 120.6 130 49.2
Dinv33967 Davidia involucrata HOM05D004062 ORTHO05D004417 1.4e-24 116.7 123 55.3
PGR004G1762 Punica granatum HOM05D004062 ORTHO05D004417 1.4e-24 116.7 127 48.0
CiPaw.03G065300 Carya illinoinensis HOM05D004062 ORTHO05D004417 2.4e-24 115.9 134 51.5
Psat3g097240 Pisum sativum HOM05D004062 ORTHO05D004417 5.3e-24 114.8 135 54.1
Ca_08097_v3 Cicer arietinum L. HOM05D004062 ORTHO05D004417 1.2e-23 113.6 139 55.4
TAR622G0216 Trochodendron aralioides HOM05D004062 ORTHO05D004417 1.2e-23 113.6 134 47.0
Medtr7g082760 Medicago truncatula HOM05D004062 ORTHO05D004417 4.5e-23 111.7 138 55.8
Cc07_g08490 Coffea canephora HOM05D004062 ORTHO05D004417 1.3e-22 110.2 132 50.0
TPR.G11392 Trifolium pratense HOM05D004062 ORTHO05D004417 7.2e-21 104.4 126 51.6
Aqoxy3G03996 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 1.6e-20 103.2 130 46.9
SGA_v2.0_scaffold202G41473 Striga asiatica HOM05D004062 ORTHO05D004417 2.1e-20 102.8 120 52.5
TAR629G2241 Trochodendron aralioides HOM05D004062 ORTHO05D004417 2.7e-20 102.4 122 48.4
Potri.017G119800 Populus trichocarpa HOM05D004062 ORTHO05D004417 3.6e-20 102.1 133 45.1
TAR622G1405 Trochodendron aralioides HOM05D004062 ORTHO05D004417 3.6e-20 102.1 127 44.1
CiPaw.05G243300 Carya illinoinensis HOM05D004062 ORTHO05D004417 4.6e-20 101.7 136 43.4
Aqoxy3G03995 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 6.1e-20 101.3 134 47.8
Manes.01G113100 Manihot esculenta HOM05D004062 ORTHO05D004417 1.8e-19 99.8 127 48.0
Sabra17G0098800 Salix brachista HOM05D004062 ORTHO05D004417 1.8e-19 99.8 131 45.0
Eucgr.F02795 Eucalyptus grandis HOM05D004062 ORTHO05D004417 2.3e-19 99.4 135 43.0
CANSAT78G1768 Cannabis sativa HOM05D004062 ORTHO05D004417 5.1e-19 98.2 139 42.4
Lj1g0018189 Lotus japonicus HOM05D004062 ORTHO05D004417 6.7e-19 97.8 140 50.0
Potri.004G095150 Populus trichocarpa HOM05D004062 ORTHO05D004417 6.7e-19 97.8 136 43.4
Potri.004G095200 Populus trichocarpa HOM05D004062 ORTHO05D004417 6.7e-19 97.8 136 43.4
Rhsim08G0083900 Rhododendron simsii HOM05D004062 ORTHO05D004417 6.7e-19 97.8 123 48.0
Aqoxy3G03994 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 1.1e-18 97.1 129 44.2
MBI16_g14297_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 2.5e-18 95.9 132 43.9
Lsat_1_v5_gn_3_82781 Lactuca sativa HOM05D004062 ORTHO05D004417 3.3e-18 95.5 129 40.3
Ciclev10013069m.g Citrus clementina HOM05D004062 ORTHO05D004417 4.3e-18 95.1 126 46.8
Manes.02G072000 Manihot esculenta HOM05D004062 ORTHO05D004417 5.7e-18 94.7 132 44.7
MSTRG.23597 Avicennia marina HOM05D004062 ORTHO05D004417 9.7e-18 94.0 119 49.6
Hma1.2p1_0500F.1_g167200 Hydrangea macrophylla HOM05D004062 ORTHO05D004417 9.7e-18 94.0 125 47.2
Oeu041981.1 Olea europaea HOM05D004062 ORTHO05D004417 9.7e-18 94.0 135 45.9
Potri.010G119200 Populus trichocarpa HOM05D004062 ORTHO05D004417 9.7e-18 94.0 129 38.8
CSS0038275 Camellia sinensis var. sinensis HOM05D004062 ORTHO05D004417 1.7e-17 93.2 131 43.5
Migut.H00242 Erythranthe guttata HOM05D004062 ORTHO05D004417 1.7e-17 93.2 125 42.4
PGSC0003DMG400016976 Solanum tuberosum HOM05D004062 ORTHO05D004417 2.2e-17 92.8 134 42.5
PGSC0003DMG400030667 Solanum tuberosum HOM05D004062 ORTHO05D004417 2.2e-17 92.8 134 42.5
SalBow3G0055 Salvia bowleyana HOM05D004062 ORTHO05D004417 3.7e-17 92.0 99 50.5
CSS0019285 Camellia sinensis var. sinensis HOM05D004062 ORTHO05D004417 4.8e-17 91.7 131 43.5
Rhsim10G0073300 Rhododendron simsii HOM05D004062 ORTHO05D004417 4.8e-17 91.7 137 42.3
Ciclev10013071m.g Citrus clementina HOM05D004062 ORTHO05D004417 8.2e-17 90.9 121 45.5
MBI16_g14298_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 8.2e-17 90.9 130 42.3
Sabra04G0064400 Salix brachista HOM05D004062 ORTHO05D004417 1.1e-16 90.5 130 41.5
SalBow5G1592 Salvia bowleyana HOM05D004062 ORTHO05D004417 1.1e-16 90.5 116 47.4
Oeu030797.1 Olea europaea HOM05D004062 ORTHO05D004417 1.8e-16 89.7 88 54.5
Oeu030798.1 Olea europaea HOM05D004062 ORTHO05D004417 1.8e-16 89.7 88 54.5
Oeu012583.1 Olea europaea HOM05D004062 ORTHO05D004417 2.4e-16 89.4 122 47.5
Thecc.02G220400 Theobroma cacao HOM05D004062 ORTHO05D004417 4.1e-16 88.6 126 42.1
DCAR_010711 Daucus carota HOM05D004062 ORTHO05D004417 1.2e-15 87.0 136 41.2
Sabra10G0089600 Salix brachista HOM05D004062 ORTHO05D004417 3.4e-15 85.5 129 36.4
Aqoxy3G03997 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 4.5e-15 85.1 124 42.7
MBI16_g14296_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 1.0e-14 84.0 121 43.0
MBI18_g04358_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 1.3e-14 83.6 130 41.5
Cpa.g.sc314.3 Carica papaya HOM05D004062 ORTHO05D004417 3.8e-14 82.0 122 38.5
Actinidia15903 Actinidia chinensis HOM05D002710 ORTHO05D002905 5.0e-14 81.6 128 41.4
EL10Ac2g04523 Beta vulgaris HOM05D004062 ORTHO05D004417 1.4e-13 80.1 129 41.1
Atru.chr1.1607 Acer truncatum HOM05D004062 ORTHO05D004417 2.5e-13 79.3 135 40.0
Migut.L00492 Erythranthe guttata HOM05D004062 ORTHO05D004417 2.5e-13 79.3 93 50.5
Ciclev10013668m.g Citrus clementina HOM05D004062 ORTHO05D004417 3.2e-13 79.0 128 42.2
DCAR_010708 Daucus carota HOM05D004062 ORTHO05D004417 1.2e-12 77.0 139 43.2
DCAR_010710 Daucus carota HOM05D004062 ORTHO05D004417 1.2e-12 77.0 104 44.2
Ciclev10018020m.g Citrus clementina HOM05D004062 ORTHO05D004417 1.6e-12 76.6 136 37.5
DCAR_010713 Daucus carota HOM05D004062 ORTHO05D004417 2.1e-12 76.3 123 43.1
DCAR_010707 Daucus carota HOM05D004062 ORTHO05D004417 2.7e-12 75.9 105 46.7
MBI10_g08537_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 2.7e-12 75.9 133 39.8
DCAR_010706 Daucus carota HOM05D004062 ORTHO05D004417 6.1e-12 74.7 136 39.0
Prupe.1G317600 Prunus persica HOM05D004062 ORTHO05D004417 6.1e-12 74.7 135 37.8
Aqoxy3G00188 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 1.0e-11 73.9 132 36.4
Eucgr.B02857 Eucalyptus grandis HOM05D004062 ORTHO05D004417 1.0e-11 73.9 142 33.8
FAN07G0543 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.8e-11 73.2 144 35.4
FAN17G2092 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.8e-11 73.2 142 35.9
RcHm_v2.0_Chr4g0434311 Rosa chinensis HOM05D004062 ORTHO05D004417 1.8e-11 73.2 139 36.7
FvH4_4g26630 Fragaria vesca HOM05D004062 ORTHO05D004417 2.3e-11 72.8 139 34.5
FAN12G0456 Fragaria x ananassa HOM05D004062 ORTHO05D004417 2.3e-11 72.8 139 34.5
FAN12G4350 Fragaria x ananassa HOM05D004062 ORTHO05D004417 2.3e-11 72.8 139 34.5
Ciclev10017837m.g Citrus clementina HOM05D004062 ORTHO05D004417 3.0e-11 72.4 133 37.6
Atru.chr11.263 Acer truncatum HOM05D004062 ORTHO05D004417 3.9e-11 72.0 122 36.9
Atru.chr11.283 Acer truncatum HOM05D004062 ORTHO05D004417 3.9e-11 72.0 122 36.9
Prupe.1G317700 Prunus persica HOM05D004062 ORTHO05D004417 3.9e-11 72.0 138 35.5
Haze_00662 Corylus avellana HOM05D004062 ORTHO05D004417 5.1e-11 71.6 129 38.0
FAN22G1760 Fragaria x ananassa HOM05D004062 ORTHO05D004417 5.1e-11 71.6 144 34.7
Oeu047438.1 Olea europaea HOM05D004062 ORTHO05D004417 5.1e-11 71.6 122 40.2
DCAR_010712 Daucus carota HOM05D004062 ORTHO05D004417 1.5e-10 70.1 119 44.5
PGR102G0077 Punica granatum HOM05D004062 ORTHO05D004417 1.5e-10 70.1 136 34.6
Medtr3g100640 Medicago truncatula HOM05D004062 ORTHO05D004417 2.0e-10 69.7 73 52.1
FAN07G0530 Fragaria x ananassa HOM05D004062 ORTHO05D004417 5.7e-10 68.2 143 34.3
Ciclev10018255m.g Citrus clementina HOM05D004062 ORTHO05D004417 7.4e-10 67.8 138 34.8
FAN12G1821 Fragaria x ananassa HOM05D004062 ORTHO05D004417 7.4e-10 67.8 142 33.1
FvH4_4g26620 Fragaria vesca HOM05D004062 ORTHO05D004417 1.3e-09 67.0 142 33.1
FAN12G1602 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.3e-09 67.0 142 33.1
CDE10G0393 Ceratophyllum demersum HOM05D004062 ORTHO05D004417 2.2e-09 66.2 122 32.8
FvH4_4g26590 Fragaria vesca HOM05D004062 ORTHO05D004417 2.2e-09 66.2 142 33.1
Ah.16g101490 Amaranthus hybridus HOM05D004062 ORTHO05D004417 2.8e-09 65.9 130 34.6
FAN12G3833 Fragaria x ananassa HOM05D004062 ORTHO05D004417 6.3e-09 64.7 139 33.1
AUR62023219 Chenopodium quinoa HOM05D004062 ORTHO05D004417 8.2e-09 64.3 129 33.3
AUR62044612 Chenopodium quinoa HOM05D004062 ORTHO05D004417 8.2e-09 64.3 129 33.3
FAN22G1944 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.1e-08 63.9 139 33.8
FAN17G2061 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.4e-08 63.5 143 33.6
Medtr7g082725 Medicago truncatula HOM05D004062 ORTHO05D004417 1.4e-08 63.5 85 47.1
CiPaw.05G243400 Carya illinoinensis HOM05D004062 ORTHO05D004417 2.4e-08 62.8 122 31.1
FAN22G1832 Fragaria x ananassa HOM05D004062 ORTHO05D004417 2.4e-08 62.8 143 33.6
RcHm_v2.0_Chr4g0434241 Rosa chinensis HOM05D004062 ORTHO05D004417 2.4e-08 62.8 138 32.6
FvH4_4g26582 Fragaria vesca HOM05D004062 ORTHO05D004417 3.1e-08 62.4 138 31.9
Rhsim09G0103200 Rhododendron simsii HOM05D004062 ORTHO05D004417 3.1e-08 62.4 129 32.6
Hma1.2p1_0767F.1_g215470 Hydrangea macrophylla HOM05D004062 ORTHO05D004417 4.1e-08 62.0 134 35.1
Dinv31584 Davidia involucrata HOM05D004062 ORTHO05D004417 5.3e-08 61.6 99 37.4
HPP92_009718 Vanilla planifolia HOM05D004062 ORTHO05D004417 1.2e-07 60.5 142 33.1
Dinv16146 Davidia involucrata HOM05D004062 ORTHO05D004417 2.0e-07 59.7 123 34.1
DCAR_010709 Daucus carota HOM05D004062 ORTHO05D004417 2.6e-07 59.3 92 40.2
Ciclev10017483m.g Citrus clementina HOM05D004062 ORTHO05D004417 3.4e-07 58.9 127 32.3
Oeu011480.1 Olea europaea HOM05D003529 ORTHO05D004106 7.7e-07 57.8 141 31.2
MELO3C005337.2 Cucumis melo HOM05D004062 ORTHO05D004417 1.0e-06 57.4 116 38.8
Rhsim13G0007500 Rhododendron simsii HOM05D003529 ORTHO05D004106 1.0e-06 57.4 86 39.5
Cfa015829 Carpinus fangiana HOM05D004062 ORTHO05D004417 1.7e-06 56.6 93 36.6
Manes.14G107900 Manihot esculenta HOM05D004062 ORTHO05D004417 2.2e-06 56.2 135 30.4
ClCG01G005940 Citrullus lanatus HOM05D004062 ORTHO05D004417 2.9e-06 55.8 119 38.7
SGA_v2.0_scaffold334G49044 Striga asiatica HOM05D003529 ORTHO05D004106 2.9e-06 55.8 134 31.3
CDE10G1145 Ceratophyllum demersum HOM05D000286 ORTHO05D002905 3.8e-06 55.5 105 32.4
Nn3g21602 Nelumbo nucifera HOM05D003529 ORTHO05D004106 6.5e-06 54.7 138 32.6
HPP92_021069 Vanilla planifolia HOM05D034985 ORTHO05D004417 6.5e-06 54.7 138 29.0
Dinv10056 Davidia involucrata HOM05D003529 ORTHO05D004106 8.5e-06 54.3 132 31.1
Os05g0576600 Oryza sativa ssp. japonica HOM05D025274 ORTHO05D026015 8.5e-06 54.3 139 32.4


User provided reference genes

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