Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G292400 Glycine max HOM05D007637 ORTHO05D009508 2.4e-69 265.4 132 100.0
Glyma.02G090700 Glycine max HOM05D007637 ORTHO05D009508 9.3e-58 226.9 130 90.8
Lj1g0007116 Lotus japonicus HOM05D007637 ORTHO05D009508 5.3e-45 184.5 136 71.3
Phvul.008G009500 Phaseolus vulgaris HOM05D007637 ORTHO05D009508 1.4e-42 176.4 128 73.4
Medtr7g082920 Medicago truncatula HOM05D007637 ORTHO05D009508 4.5e-36 154.8 132 64.4
TPR.G28401 Trifolium pratense HOM05D007637 ORTHO05D009508 1.7e-35 152.9 134 64.2
VMungo1383G3686 Vigna mungo HOM05D007637 ORTHO05D009508 1.7e-35 152.9 127 65.4
Psat3g096920 Pisum sativum HOM05D007637 ORTHO05D009508 1.1e-34 150.2 135 64.4
Lalb_Chr17g0336081 Lupinus albus HOM05D007637 ORTHO05D009508 5.1e-32 141.4 131 61.8
Lalb_Chr17g0336031 Lupinus albus HOM05D007637 ORTHO05D009508 3.8e-27 125.2 104 67.3
arahy.Tifrunner.gnm1.ann1.AC9JIC Arachis hypogaea HOM05D007637 ORTHO05D009508 1.7e-22 109.8 97 63.9
arahy.Tifrunner.gnm1.ann1.BY2X14 Arachis hypogaea HOM05D007637 ORTHO05D009508 1.7e-22 109.8 97 63.9
Oeu047428.1 Olea europaea HOM05D007637 ORTHO05D009508 4.8e-22 108.2 118 45.8
CiPaw.04G044900 Carya illinoinensis HOM05D007637 ORTHO05D009508 1.1e-21 107.1 128 43.8
Dinv14862 Davidia involucrata HOM05D007637 ORTHO05D009508 1.4e-21 106.7 128 49.2
Ciclev10013623m.g Citrus clementina HOM05D007637 ORTHO05D009508 1.2e-20 103.6 131 43.5
Gohir.D07G079900 Gossypium hirsutum HOM05D007637 ORTHO05D009508 1.2e-20 103.6 132 46.2
Gorai.001G084700 Gossypium raimondii HOM05D007637 ORTHO05D009508 1.2e-20 103.6 132 46.2
DCAR_010721 Daucus carota HOM05D007637 ORTHO05D009508 1.5e-20 103.2 131 49.6
GSVIVG01030918001 Vitis vinifera HOM05D007637 ORTHO05D009508 2.6e-20 102.4 127 50.4
GSVIVG01030917001 Vitis vinifera HOM05D007637 ORTHO05D009508 3.4e-20 102.1 127 49.6
Gohir.A07G075400 Gossypium hirsutum HOM05D007637 ORTHO05D009508 4.5e-20 101.7 131 48.1
GSVIVG01030920001 Vitis vinifera HOM05D007637 ORTHO05D009508 1.0e-19 100.5 127 44.1
Potri.017G122100 Populus trichocarpa HOM05D007637 ORTHO05D009508 2.5e-18 95.9 126 40.5
Thecc.04G125100 Theobroma cacao HOM05D007637 ORTHO05D009508 3.2e-18 95.5 129 42.6
Sabra04G0062800 Salix brachista HOM05D007637 ORTHO05D009508 1.2e-17 93.6 124 44.4
TAR374G0670 Trochodendron aralioides HOM05D007637 ORTHO05D009508 1.6e-17 93.2 128 42.2
CSS0034381 Camellia sinensis var. sinensis HOM05D007637 ORTHO05D009508 4.7e-17 91.7 107 49.5
Cpa.g.sc116.6 Carica papaya HOM05D007637 ORTHO05D009508 4.7e-17 91.7 120 44.2
Actinidia36353 Actinidia chinensis HOM05D007637 ORTHO05D009508 1.4e-16 90.1 98 51.0
Manes.02G073000 Manihot esculenta HOM05D007637 ORTHO05D009508 1.4e-16 90.1 103 43.7
Cfa007872 Carpinus fangiana HOM05D007637 ORTHO05D009508 1.8e-16 89.7 128 43.0
TAR629G1467 Trochodendron aralioides HOM05D007637 ORTHO05D009508 1.8e-16 89.7 98 49.0
Dinv33980 Davidia involucrata HOM05D007637 ORTHO05D009508 2.3e-16 89.4 116 48.3
Dinv16187 Davidia involucrata HOM05D007637 ORTHO05D009508 3.0e-16 89.0 129 41.9
Hma1.2p1_0283F.1_g113660 Hydrangea macrophylla HOM05D007637 ORTHO05D009508 3.0e-16 89.0 101 48.5
Atru.chr1.1552 Acer truncatum HOM05D007637 ORTHO05D009508 5.2e-16 88.2 126 42.1
Eucgr.J01537 Eucalyptus grandis HOM05D007637 ORTHO05D009508 5.2e-16 88.2 131 41.2
Gohir.D07G182150 Gossypium hirsutum HOM05D007637 ORTHO05D009508 1.1e-15 87.0 130 39.2
Gorai.001G203000 Gossypium raimondii HOM05D007637 ORTHO05D009508 1.1e-15 87.0 130 39.2
MD09G1259400 Malus domestica HOM05D007637 ORTHO05D009508 1.1e-15 87.0 131 40.5
Rhsim10G0078000 Rhododendron simsii HOM05D007637 ORTHO05D009508 1.1e-15 87.0 129 45.7
Prupe.3G151000 Prunus persica HOM05D007637 ORTHO05D009508 2.6e-15 85.9 112 42.9
Duzib133G0287 Durio zibethinus HOM05D007637 ORTHO05D009508 4.4e-15 85.1 126 41.3
Haze_14202 Corylus avellana HOM05D007637 ORTHO05D009508 5.7e-15 84.7 89 48.3
Manes.02G073100 Manihot esculenta HOM05D007637 ORTHO05D009508 9.7e-15 84.0 88 45.5
Rhsim10G0078100 Rhododendron simsii HOM05D007637 ORTHO05D009508 1.3e-14 83.6 118 44.1
Gohir.A07G175550 Gossypium hirsutum HOM05D007637 ORTHO05D009508 2.8e-14 82.4 130 36.9
Solyc02g091193.1 Solanum lycopersicum HOM05D007637 ORTHO05D009508 3.7e-14 82.0 133 38.3
PGR042G0465 Punica granatum HOM05D007637 ORTHO05D009508 4.8e-14 81.6 101 41.6
Oeu007437.1 Olea europaea HOM05D007637 ORTHO05D009508 8.2e-14 80.9 131 40.5
Eucgr.J01536 Eucalyptus grandis HOM05D007637 ORTHO05D009508 1.4e-13 80.1 132 39.4
Potri.010G115900 Populus trichocarpa HOM05D007637 ORTHO05D009508 1.8e-13 79.7 114 36.8
Sed0013286 Sechium edule HOM05D007637 ORTHO05D009508 2.4e-13 79.3 112 37.5
Manes.01G114400 Manihot esculenta HOM05D007637 ORTHO05D009508 3.1e-13 79.0 97 41.2
PGSC0003DMG400030637 Solanum tuberosum HOM05D007637 ORTHO05D009508 3.1e-13 79.0 98 40.8
ATR0326G042 Amborella trichopoda HOM05D007637 ORTHO05D009508 4.1e-13 78.6 111 37.8
TAR622G1280 Trochodendron aralioides HOM05D007637 ORTHO05D009508 5.3e-13 78.2 103 44.7
Eucgr.J01538 Eucalyptus grandis HOM05D007637 ORTHO05D009508 7.0e-13 77.8 132 40.2
Manes.14G136000 Manihot esculenta HOM05D007637 ORTHO05D009508 7.0e-13 77.8 100 43.0
MD09G1259200 Malus domestica HOM05D007637 ORTHO05D009508 1.2e-12 77.0 100 45.0
MBI10_g37696_MAGBIO Magnolia biondii HOM05D007637 ORTHO05D009508 1.6e-12 76.6 103 45.6
HanXRQChr09g0262421 Helianthus annuus HOM05D007637 ORTHO05D009508 7.7e-12 74.3 101 42.6
Manes.06G062300 Manihot esculenta HOM05D007637 ORTHO05D009508 7.7e-12 74.3 102 41.2
Nitab4.5_0005700g0020 Nicotiana tabacum HOM05D007637 ORTHO05D009508 7.7e-12 74.3 98 41.8
TWI74G0234 Tripterygium wilfordii HOM05D007637 ORTHO05D009508 1.0e-11 73.9 104 40.4
SalBow3G1214 Salvia bowleyana HOM05D007637 ORTHO05D009508 1.7e-11 73.2 110 45.5
SalBow3G3066 Salvia bowleyana HOM05D007637 ORTHO05D009508 1.7e-11 73.2 110 45.5
Thecc.04G124800 Theobroma cacao HOM05D007637 ORTHO05D009508 1.7e-11 73.2 87 43.7
TWI79G1694 Tripterygium wilfordii HOM05D007637 ORTHO05D009508 2.2e-11 72.8 132 38.6
Ciclev10017462m.g Citrus clementina HOM05D007637 ORTHO05D009508 5.5e-10 68.2 129 34.9
Gorai.001G203100 Gossypium raimondii HOM05D007637 ORTHO05D009508 5.5e-10 68.2 130 38.5
Gohir.D07G182500 Gossypium hirsutum HOM05D007637 ORTHO05D009508 7.2e-10 67.8 130 38.5
HanXRQChr09g0262411 Helianthus annuus HOM05D007637 ORTHO05D009508 9.4e-10 67.4 101 38.6
Sabra10G0085700 Salix brachista HOM05D004972 ORTHO05D006309 1.6e-09 66.6 98 37.8
Sabra10G0087400 Salix brachista HOM05D004972 ORTHO05D006309 1.6e-09 66.6 98 37.8
Lsat_1_v5_gn_4_155320 Lactuca sativa HOM05D007637 ORTHO05D009508 6.1e-09 64.7 101 37.6
Nitab4.5_0002456g0080 Nicotiana tabacum HOM05D007637 ORTHO05D009508 6.7e-08 61.2 48 56.2
Solyc04g007585.1 Solanum lycopersicum HOM05D007637 ORTHO05D009508 1.2e-07 60.5 103 36.9
PGSC0003DMG400010395 Solanum tuberosum HOM05D007637 ORTHO05D009508 1.2e-07 60.5 86 39.5
QL02p049171 Quercus lobata HOM05D007637 ORTHO05D009508 2.0e-07 59.7 51 51.0
Glyma.10G266100 Glycine max HOM05D007637 ORTHO05D009508 3.3e-07 58.9 126 36.5
MBI16_g21183_MAGBIO Magnolia biondii HOM05D007637 ORTHO05D009508 3.3e-07 58.9 53 50.9
Rhsim09G0068300 Rhododendron simsii HOM05D007637 ORTHO05D009508 7.5e-07 57.8 111 33.3
HanXRQChr11g0325281 Helianthus annuus HOM05D007637 ORTHO05D009508 9.7e-07 57.4 138 29.0
Actinidia15914 Actinidia chinensis HOM05D007637 ORTHO05D009508 1.3e-06 57.0 111 39.6
Actinidia31983 Actinidia chinensis HOM05D007637 ORTHO05D009508 1.3e-06 57.0 78 42.3
arahy.Tifrunner.gnm1.ann1.NE5PRN Arachis hypogaea HOM05D026189 ORTHO05D009508 1.3e-06 57.0 134 33.6
Eucgr.G02214 Eucalyptus grandis HOM05D007637 ORTHO05D009508 1.3e-06 57.0 90 41.1
Glyma.20G124500 Glycine max HOM05D007637 ORTHO05D009508 1.7e-06 56.6 128 35.9


User provided reference genes

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