Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G288300 Glycine max HOM05D006083 ORTHO05D007634 0.0e+00 3334.3 1681 100.0
VMungo1383G1537 Vigna mungo HOM05D006083 ORTHO05D007634 0.0e+00 2572.7 1696 78.6
Lj1g0008101 Lotus japonicus HOM05D006083 ORTHO05D007634 0.0e+00 2289.6 1690 71.8
Psat3g185080 Pisum sativum HOM05D006083 ORTHO05D007634 0.0e+00 2129.0 1681 67.5
Ca_07227_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 0.0e+00 2124.0 1686 67.6
arahy.Tifrunner.gnm1.ann1.ES2X5Y Arachis hypogaea HOM05D006083 ORTHO05D007634 0.0e+00 2121.7 1680 66.7
arahy.Tifrunner.gnm1.ann1.V7LDKI Arachis hypogaea HOM05D006083 ORTHO05D007634 0.0e+00 2121.7 1680 66.7
Medtr7g024000 Medicago truncatula HOM05D006083 ORTHO05D007634 0.0e+00 2069.3 1692 66.1
Lalb_Chr10g0091771 Lupinus albus HOM05D006083 ORTHO05D007634 0.0e+00 1770.7 1240 72.0
TPR.G15506 Trifolium pratense HOM05D006083 ORTHO05D007634 0.0e+00 1766.5 1317 68.3
Lalb_Chr04g0257841 Lupinus albus HOM05D006083 ORTHO05D007634 0.0e+00 1746.9 1243 71.2
Phvul.008G013732 Phaseolus vulgaris HOM05D006083 ORTHO05D007634 0.0e+00 1561.2 933 82.4
Cfa001507 Carpinus fangiana HOM05D006083 ORTHO05D007634 0.0e+00 1469.1 1690 49.6
Haze_17036 Corylus avellana HOM05D006083 ORTHO05D007634 0.0e+00 1457.6 1798 48.1
QL08p059019 Quercus lobata HOM05D006083 ORTHO05D007634 0.0e+00 1382.9 1784 47.5
Manes.07G113300 Manihot esculenta HOM05D006083 ORTHO05D007634 0.0e+00 1312.7 1715 46.1
CiPaw.01G284100 Carya illinoinensis HOM05D006083 ORTHO05D007634 0.0e+00 1304.7 1772 45.5
Prupe.2G231200 Prunus persica HOM05D006083 ORTHO05D007634 0.0e+00 1295.8 1760 44.7
Thecc.10G046700 Theobroma cacao HOM05D006083 ORTHO05D007634 0.0e+00 1295.0 1752 46.4
Potri.008G052500 Populus trichocarpa HOM05D006083 ORTHO05D007634 0.0e+00 1261.9 1741 44.7
Atru.chr12.505 Acer truncatum HOM05D006083 ORTHO05D007634 0.0e+00 1224.2 1575 46.2
COL.COLO4_14970 Corchorus olitorius HOM05D006083 ORTHO05D007634 0.0e+00 1213.4 1763 44.1
MD07G1193600 Malus domestica HOM05D006083 ORTHO05D007634 0.0e+00 1210.7 1838 41.9
Gohir.D04G062600 Gossypium hirsutum HOM05D006083 ORTHO05D007634 0.0e+00 1209.9 1770 43.7
Sabra08G0037800 Salix brachista HOM05D006083 ORTHO05D007634 0.0e+00 1207.6 1689 44.5
Gorai.012G069900 Gossypium raimondii HOM05D006083 ORTHO05D007634 0.0e+00 1204.1 1775 43.5
FAN06G0387 Fragaria x ananassa HOM05D006083 ORTHO05D007634 0.0e+00 1196.8 1768 42.8
Potri.010G208200 Populus trichocarpa HOM05D006083 ORTHO05D007634 0.0e+00 1193.7 1744 43.1
FvH4_7g21930 Fragaria vesca HOM05D006083 ORTHO05D007634 0.0e+00 1190.3 1753 42.6
Gohir.A05G349900 Gossypium hirsutum HOM05D006083 ORTHO05D007634 0.0e+00 1187.9 1775 43.2
FAN03G2083 Fragaria x ananassa HOM05D006083 ORTHO05D007634 0.0e+00 1184.1 1776 42.4
FAN06G5109 Fragaria x ananassa HOM05D006083 ORTHO05D007634 0.0e+00 1184.1 1785 42.4
FAN01G1089 Fragaria x ananassa HOM05D006083 ORTHO05D007634 0.0e+00 1183.7 1777 42.5
Dinv31433 Davidia involucrata HOM05D006083 ORTHO05D007634 0.0e+00 1165.2 1785 42.2
TWI15G0674 Tripterygium wilfordii HOM05D006083 ORTHO05D007634 0.0e+00 1153.3 1777 42.0
CANSAT56G1432 Cannabis sativa HOM05D006083 ORTHO05D007634 0.0e+00 1140.9 1767 42.2
Ca_29789_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 0.0e+00 1139.4 774 72.5
CSS0008531 Camellia sinensis var. sinensis HOM05D006083 ORTHO05D007634 0.0e+00 1129.0 1785 41.2
Actinidia02966 Actinidia chinensis HOM05D006083 ORTHO05D007634 0.0e+00 1116.7 1788 41.1
GSVIVG01016589001 Vitis vinifera HOM05D006083 ORTHO05D007634 0.0e+00 1108.6 1788 41.7
Duzib114G0803 Durio zibethinus HOM05D006083 ORTHO05D007634 0.0e+00 1087.8 1382 46.2
ClCG09G020050 Citrullus lanatus HOM05D006083 ORTHO05D007634 7.4e-309 1064.7 1762 40.1
Rhsim03G0132700 Rhododendron simsii HOM05D006083 ORTHO05D007634 1.3e-300 1037.3 1786 38.7
MELO3C025449.2 Cucumis melo HOM05D006083 ORTHO05D007634 9.3e-296 1021.1 1765 39.0
Nn2g12936 Nelumbo nucifera HOM05D006083 ORTHO05D007634 1.6e-295 1020.4 1812 39.1
Ciclev10030497m.g Citrus clementina HOM05D006083 ORTHO05D007634 1.5e-293 1013.8 1694 40.7
CsaV3_5G026410 Cucumis sativus L. HOM05D006083 ORTHO05D007634 1.2e-290 1004.2 1745 38.9
PGR142G3850 Punica granatum HOM05D006083 ORTHO05D007634 5.9e-290 1001.9 1725 38.8
Sed0020975 Sechium edule HOM05D006083 ORTHO05D007634 8.2e-276 954.9 1765 37.7
Eucgr.G02918 Eucalyptus grandis HOM05D006083 ORTHO05D007634 4.1e-275 952.6 1753 38.3
Solyc04g011380.4 Solanum lycopersicum HOM05D006083 ORTHO05D007634 2.8e-268 929.9 1764 36.3
Peaxi162Scf00060g00026 Petunia axillaris HOM05D006083 ORTHO05D007634 4.1e-267 926.0 1669 37.1
Sopen04g005570 Solanum pennellii HOM05D006083 ORTHO05D007634 1.2e-266 924.5 1762 35.9
Aqoxy4G02985 Aquilegia oxysepala HOM05D006083 ORTHO05D007634 1.5e-264 917.5 1765 35.9
CAN.G786.23 Capsicum annuum HOM05D006083 ORTHO05D007634 4.7e-263 912.5 1777 36.1
vmacro07157 Vaccinium macrocarpon HOM05D006083 ORTHO05D007634 4.0e-262 909.4 2092 33.2
Lj1A934T60 Lonicera japonica HOM05D006083 ORTHO05D007634 1.5e-261 907.5 1378 40.7
FAN10G0925 Fragaria x ananassa HOM05D006083 ORTHO05D007634 7.5e-261 905.2 1500 41.3
TAR623G0128 Trochodendron aralioides HOM05D006083 ORTHO05D007634 7.7e-258 895.2 1682 37.3
Hund12547 Selenicereus undatus HOM05D006083 ORTHO05D007634 3.8e-257 892.9 1800 37.7
Lj8C87G2 Lonicera japonica HOM05D006356 ORTHO05D007903 1.1e-256 891.3 1735 35.7
Sc06g0002680 Simmondsia chinensis HOM05D006083 ORTHO05D007634 3.2e-256 889.8 1256 41.6
Phvul.008G013666 Phaseolus vulgaris HOM05D006083 ORTHO05D007634 1.2e-255 887.9 617 79.1
EL10Ac2g03425 Beta vulgaris HOM05D006083 ORTHO05D007634 7.5e-253 878.6 1730 37.4
THA.LOC104810174 Tarenaya hassleriana HOM05D006083 ORTHO05D007634 5.9e-250 869.0 1701 36.2
MBI14_g18543_MAGBIO Magnolia biondii HOM05D006083 ORTHO05D007634 3.0e-246 856.7 1853 34.5
AUR62040954 Chenopodium quinoa HOM05D006083 ORTHO05D007634 6.3e-244 849.0 1742 36.2
AT2G39580 Arabidopsis thaliana HOM05D006083 ORTHO05D007634 3.6e-239 833.2 1697 36.3
Cc02_g08180 Coffea canephora HOM05D006083 ORTHO05D007634 6.2e-239 832.4 1657 35.6
CARHR134450 Cardamine hirsuta HOM05D006083 ORTHO05D007634 1.0e-238 831.6 1698 35.5
AL4G36990 Arabidopsis lyrata HOM05D006083 ORTHO05D007634 6.8e-238 828.9 1674 36.2
AUR62038373 Chenopodium quinoa HOM05D006083 ORTHO05D007634 2.6e-237 827.0 1684 36.5
Sp4g21870 Schrenkiella parvula HOM05D006083 ORTHO05D007634 4.9e-236 822.8 1700 35.2
Carub.0004s2165 Capsella rubella HOM05D006083 ORTHO05D007634 1.3e-233 814.7 1682 35.3
Thhalv10016135m.g Eutrema salsugineum HOM05D006083 ORTHO05D007634 4.3e-232 809.7 1716 34.6
Aa31LG5G20040 Aethionema arabicum HOM05D006083 ORTHO05D007634 5.6e-232 809.3 1685 35.7
BolC4t28242H Brassica oleracea HOM05D006083 ORTHO05D007634 5.2e-230 802.7 1683 35.1
C04p67440 Brassica napus HOM05D006083 ORTHO05D007634 1.2e-229 801.6 1679 34.7
A04p30380 Brassica napus HOM05D006083 ORTHO05D007634 1.7e-228 797.7 1704 34.8
DCAR_027665 Daucus carota HOM05D006083 ORTHO05D007634 4.1e-227 793.1 1861 33.7
BraA04t18470Z Brassica rapa HOM05D006083 ORTHO05D007634 7.8e-226 788.9 1694 34.8
CANSAT56G0880 Cannabis sativa HOM05D006083 ORTHO05D007634 1.7e-220 771.2 812 49.6
PSO384G3245 Papaver somniferum HOM05D006083 ORTHO05D007634 4.9e-220 769.6 1805 33.6
Oeu040905.3 Olea europaea HOM05D006083 ORTHO05D007634 1.4e-219 768.1 1285 37.9
PSO339G3664 Papaver somniferum HOM05D006083 ORTHO05D007634 2.1e-218 764.2 1824 33.4
HanXRQChr09g0247731 Helianthus annuus HOM05D006083 ORTHO05D007634 2.7e-218 763.8 1747 33.9
Lsat_1_v5_gn_9_65161 Lactuca sativa HOM05D006083 ORTHO05D007634 2.4e-211 740.7 1708 34.3
SHI22592 Sapria himalayana HOM05D006083 ORTHO05D007634 1.9e-195 688.0 1776 31.6
Nitab4.5_0005525g0010 Nicotiana tabacum HOM05D006083 ORTHO05D007634 1.9e-192 677.9 1764 32.4
TAR369G0895 Trochodendron aralioides HOM05D006083 ORTHO05D007634 3.8e-188 663.7 663 51.7
RcHm_v2.0_Chr1g0366211 Rosa chinensis HOM05D006083 ORTHO05D007634 4.8e-183 646.7 638 50.8
Cpa.g.sc1.374 Carica papaya HOM05D006083 ORTHO05D007634 5.9e-181 639.8 676 47.6
Nitab4.5_0003969g0020 Nicotiana tabacum HOM05D006083 ORTHO05D007634 1.3e-167 595.5 1355 34.9
Zm00001eb028750 Zea mays HOM05D006083 ORTHO05D007634 1.4e-161 575.5 1635 30.4
ATR0559G184 Amborella trichopoda HOM05D006083 ORTHO05D007634 1.8e-161 575.1 1835 29.2
CDE05G2458 Ceratophyllum demersum HOM05D006083 ORTHO05D007634 6.5e-156 556.6 1712 29.7
RcHm_v2.0_Chr1g0366201 Rosa chinensis HOM05D006083 ORTHO05D007634 2.1e-154 551.6 1099 38.4
SEGI_22945 Sequoiadendron giganteum HOM05D006083 ORTHO05D007634 1.0e-124 453.0 904 33.1
Lalb_Chr04g0257831 Lupinus albus HOM05D006083 ORTHO05D007634 3.1e-121 441.4 427 62.1
Lalb_Chr10g0091761 Lupinus albus HOM05D006083 ORTHO05D007634 1.2e-117 429.5 418 61.7
FAN10G2882 Fragaria x ananassa HOM05D006083 ORTHO05D007634 9.5e-115 419.9 431 48.3
BcaB06g29099 Brassica carinata HOM05D006083 ORTHO05D007634 1.2e-109 402.9 1167 32.8
Peaxi162Scf00060g00126 Petunia axillaris HOM05D006083 ORTHO05D007634 3.2e-94 351.7 530 38.9
HPP92_018996 Vanilla planifolia HOM05D006083 ORTHO05D007634 4.6e-93 347.8 626 35.3
Mapoly0075s0039 Marchantia polymorpha HOM05D006083 ORTHO05D007634 7.1e-86 323.9 904 28.7
Cpa.g.sc1.375 Carica papaya HOM05D006083 ORTHO05D007634 6.9e-81 307.4 621 37.5
TPR.G40211 Trifolium pratense HOM05D006083 ORTHO05D007634 5.8e-80 304.3 352 54.3
SEGI_25206 Sequoiadendron giganteum HOM05D006083 ORTHO05D007634 1.8e-73 282.7 532 34.0
Os12g0566500 Oryza sativa ssp. japonica HOM05D006083 ORTHO05D007634 2.0e-72 279.3 454 35.9
TAR369G0795 Trochodendron aralioides HOM05D006083 ORTHO05D007634 3.4e-72 278.5 799 32.9
Glyma.02G093802 Glycine max HOM05D006083 ORTHO05D007634 2.9e-71 275.4 152 88.8
Pp3c6_12750 Physcomitrium patens HOM05D006083 ORTHO05D007634 2.9e-63 248.8 835 25.4
AagrBONN_evm.TU.Sc2ySwM_228.2795 Anthoceros agrestis HOM05D000140 ORTHO05D007634 1.9e-62 246.1 863 27.3
SMO367G1201 Selaginella moellendorffii HOM05D006083 ORTHO05D007634 6.9e-57 227.6 1250 24.9
Actinidia07719 Actinidia chinensis HOM05D001446 ORTHO05D001360 8.8e-52 210.7 669 26.2
Ca_07226_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 1.4e-49 203.4 130 70.0
Hund24433 Selenicereus undatus HOM05D006083 ORTHO05D007634 5.5e-38 164.9 765 30.1
Cpa.g.sc1.376 Carica papaya HOM05D006083 ORTHO05D007634 1.6e-32 146.7 423 33.6
Ca_29897_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 1.3e-31 143.7 111 65.8
RcHm_v2.0_Chr3g0492191 Rosa chinensis HOM05D006083 ORTHO05D007634 7.0e-25 121.3 220 44.5
Sc06g0002670 Simmondsia chinensis HOM05D006083 ORTHO05D007634 7.2e-22 111.3 465 29.7
HPP92_018997 Vanilla planifolia HOM05D006083 ORTHO05D007634 3.5e-16 92.4 639 27.1
Oeu023787.1 Olea europaea HOM05D006083 ORTHO05D007634 4.5e-16 92.0 321 32.1
Lsat_1_v5_gn_7_4020 Lactuca sativa HOM05D006083 ORTHO05D007634 2.1e-13 83.2 59 71.2
ATR0618G162 Amborella trichopoda HOM05D006083 ORTHO05D007634 1.8e-12 80.1 90 44.4
AL7G29000 Arabidopsis lyrata HOM05D006083 ORTHO05D011291 2.6e-11 76.3 50 60.0
AagrBONN_evm.TU.Sc2ySwM_228.2798 Anthoceros agrestis HOM05D006083 ORTHO05D007634 5.4e-09 68.6 314 26.4


User provided reference genes

Program Settings