Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G285100 Glycine max HOM05D002685 ORTHO05D001487 6.1e-171 604.4 379 100.0
Glyma.18G284900 Glycine max HOM05D002685 ORTHO05D001487 2.2e-104 383.3 379 62.3
Phvul.008G016500 Phaseolus vulgaris HOM05D002685 ORTHO05D001487 2.1e-70 270.4 407 50.6
VMungo1383G1702 Vigna mungo HOM05D002685 ORTHO05D001487 1.4e-69 267.7 379 53.3
Glyma.02G096400 Glycine max HOM05D002685 ORTHO05D001487 5.9e-65 252.3 369 54.5
Phvul.008G016600 Phaseolus vulgaris HOM05D002685 ORTHO05D001487 2.9e-56 223.4 378 46.8
VMungo1383G0720 Vigna mungo HOM05D002685 ORTHO05D001487 2.4e-50 203.8 382 46.3
Lj1g0010375 Lotus japonicus HOM05D002685 ORTHO05D001487 3.7e-43 179.9 449 35.9
Medtr7g022490 Medicago truncatula HOM05D002685 ORTHO05D001487 1.5e-39 167.9 384 48.4
Medtr7g022790 Medicago truncatula HOM05D002685 ORTHO05D001487 1.5e-39 167.9 384 48.7
Ca_07157_v3 Cicer arietinum L. HOM05D002685 ORTHO05D001487 7.5e-36 155.6 379 47.5
Lalb_Chr10g0092001 Lupinus albus HOM05D002685 ORTHO05D001487 6.4e-35 152.5 378 37.6
Ca_07143_v3 Cicer arietinum L. HOM05D002685 ORTHO05D001487 8.3e-35 152.1 420 41.7
TPR.G2897 Trifolium pratense HOM05D002685 ORTHO05D001487 3.5e-33 146.7 396 44.9
Psat3g186840 Pisum sativum HOM05D002685 ORTHO05D001487 1.5e-31 141.4 355 39.2
arahy.Tifrunner.gnm1.ann1.D7MIWJ Arachis hypogaea HOM05D002685 ORTHO05D001487 3.1e-29 133.7 398 39.7
arahy.Tifrunner.gnm1.ann1.G65IU1 Arachis hypogaea HOM05D002685 ORTHO05D001487 3.1e-29 133.7 398 39.7
Thecc.02G200000 Theobroma cacao HOM05D002685 ORTHO05D001487 1.4e-26 124.8 350 32.0
Psat3g186800 Pisum sativum HOM05D002685 ORTHO05D001487 1.9e-26 124.4 151 51.7
vmacro01042 Vaccinium macrocarpon HOM05D002685 ORTHO05D001487 5.4e-26 122.9 424 32.1
Sabra03G0122800 Salix brachista HOM05D002685 ORTHO05D001487 1.0e-24 118.6 379 31.1
CANSAT01G2764 Cannabis sativa HOM05D002685 ORTHO05D001487 1.3e-24 118.2 370 32.4
MD13G1123300 Malus domestica HOM05D002685 ORTHO05D001487 1.3e-24 118.2 351 34.2
MELO3C017749.2 Cucumis melo HOM05D002685 ORTHO05D001487 2.3e-24 117.5 373 31.1
TPR.G27398 Trifolium pratense HOM05D002685 ORTHO05D001487 2.3e-24 117.5 128 57.0
Duzib052G0088 Durio zibethinus HOM05D002685 ORTHO05D001487 5.1e-24 116.3 391 29.7
Psat3g186880 Pisum sativum HOM05D002685 ORTHO05D001487 5.1e-24 116.3 353 34.8
CiPaw.05G105900 Carya illinoinensis HOM05D002685 ORTHO05D001487 5.6e-23 112.8 118 54.2
MD16G1124100 Malus domestica HOM05D002685 ORTHO05D001487 2.8e-22 110.5 139 52.5
QL03p051288 Quercus lobata HOM05D002685 ORTHO05D001487 2.8e-22 110.5 169 44.4
Cpa.g.sc96.31 Carica papaya HOM05D002685 ORTHO05D001487 3.6e-22 110.2 388 34.0
Potri.003G167500 Populus trichocarpa HOM05D002685 ORTHO05D001487 3.6e-22 110.2 120 52.5
Atru.chr11.2379 Acer truncatum HOM05D002685 ORTHO05D001487 1.4e-21 108.2 152 46.7
PGR119G2530 Punica granatum HOM05D002685 ORTHO05D001487 1.4e-21 108.2 419 30.5
Prupe.1G221500 Prunus persica HOM05D002685 ORTHO05D001487 3.1e-21 107.1 364 31.9
THA.LOC104825581 Tarenaya hassleriana HOM05D002685 ORTHO05D001487 3.1e-21 107.1 133 50.4
CsaV3_4G002950 Cucumis sativus L. HOM05D002685 ORTHO05D001487 1.2e-20 105.1 387 29.5
Sopen06g028800 Solanum pennellii HOM05D002685 ORTHO05D001487 1.5e-20 104.8 371 32.1
Haze_12458 Corylus avellana HOM05D002685 ORTHO05D001487 2.0e-20 104.4 375 31.5
COL.COLO4_35705 Corchorus olitorius HOM05D002685 ORTHO05D001487 3.4e-20 103.6 359 38.4
CSS0035629 Camellia sinensis var. sinensis HOM05D002685 ORTHO05D001487 4.4e-20 103.2 344 32.8
Cc09_g08480 Coffea canephora HOM05D002685 ORTHO05D001487 7.6e-20 102.4 340 36.5
SalBow2G0376 Salvia bowleyana HOM05D002685 ORTHO05D001487 7.6e-20 102.4 390 28.7
Lj1C600T9 Lonicera japonica HOM05D002685 ORTHO05D001487 9.9e-20 102.1 155 41.9
Nitab4.5_0000337g0100 Nicotiana tabacum HOM05D002685 ORTHO05D001487 1.3e-19 101.7 354 36.4
Gorai.005G194700 Gossypium raimondii HOM05D002685 ORTHO05D001487 1.7e-19 101.3 356 37.6
Cfa009398 Carpinus fangiana HOM05D002685 ORTHO05D001487 2.9e-19 100.5 379 31.4
SalBow2G0840 Salvia bowleyana HOM05D002685 ORTHO05D001487 2.9e-19 100.5 390 28.7
Solyc06g072430.3 Solanum lycopersicum HOM05D002685 ORTHO05D001487 2.9e-19 100.5 371 32.1
TWI75G0855 Tripterygium wilfordii HOM05D002685 ORTHO05D001487 2.9e-19 100.5 342 34.5
Actinidia08046 Actinidia chinensis HOM05D002685 ORTHO05D001487 4.9e-19 99.8 376 37.5
Psat3g186080 Pisum sativum HOM05D002685 ORTHO05D001487 4.9e-19 99.8 256 33.6
Sed0015254 Sechium edule HOM05D002685 ORTHO05D001487 4.9e-19 99.8 361 31.6
Sc14g0009180 Simmondsia chinensis HOM05D002685 ORTHO05D001487 4.9e-19 99.8 200 39.5
Actinidia25109 Actinidia chinensis HOM05D002685 ORTHO05D001487 6.4e-19 99.4 138 50.7
ClCG07G015360 Citrullus lanatus HOM05D002685 ORTHO05D001487 6.4e-19 99.4 389 29.8
Gorai.005G194800 Gossypium raimondii HOM05D002685 ORTHO05D001487 1.1e-18 98.6 336 35.4
PGSC0003DMG400041029 Solanum tuberosum HOM05D002685 ORTHO05D001487 1.4e-18 98.2 371 32.6
Nitab4.5_0003251g0040 Nicotiana tabacum HOM05D002685 ORTHO05D001487 1.9e-18 97.8 358 36.6
Gohir.A03G150201 Gossypium hirsutum HOM05D002685 ORTHO05D001487 2.4e-18 97.4 161 42.2
Oeu001318.1 Olea europaea HOM05D002685 ORTHO05D001487 2.4e-18 97.4 135 44.4
TAR629G1863 Trochodendron aralioides HOM05D002685 ORTHO05D001487 2.4e-18 97.4 117 49.6
CAN.G65.93 Capsicum annuum HOM05D002685 ORTHO05D001487 3.2e-18 97.1 363 35.5
Gohir.D02G173100 Gossypium hirsutum HOM05D002685 ORTHO05D001487 4.2e-18 96.7 336 35.4
Lj1C600G7 Lonicera japonica HOM05D002685 ORTHO05D001487 5.4e-18 96.3 367 39.8
MBI07_g36513_MAGBIO Magnolia biondii HOM05D002685 ORTHO05D001487 5.4e-18 96.3 141 44.7
TPR.G15496 Trifolium pratense HOM05D002685 ORTHO05D001487 5.4e-18 96.3 373 40.5
TAR365G1211 Trochodendron aralioides HOM05D002685 ORTHO05D001487 5.4e-18 96.3 142 47.2
Gohir.A03G150100 Gossypium hirsutum HOM05D002685 ORTHO05D001487 9.3e-18 95.5 341 37.0
Nitab4.5_0003401g0080 Nicotiana tabacum HOM05D002685 ORTHO05D001487 1.6e-17 94.7 140 45.7
Peaxi162Scf00128g00166 Petunia axillaris HOM05D002685 ORTHO05D001487 2.7e-17 94.0 146 43.2
RcHm_v2.0_Chr4g0429621 Rosa chinensis HOM05D002685 ORTHO05D001487 2.7e-17 94.0 132 44.7
HanXRQChr14g0451421 Helianthus annuus HOM05D002685 ORTHO05D001487 6.0e-17 92.8 152 43.4
Gohir.D10G237708 Gossypium hirsutum HOM05D002685 ORTHO05D001487 7.8e-17 92.4 139 42.4
Solyc10g084170.1 Solanum lycopersicum HOM05D002685 ORTHO05D001487 7.8e-17 92.4 135 43.0
unitig_52.g17421 Utricularia gibba HOM05D002685 ORTHO05D001487 7.8e-17 92.4 124 49.2
Manes.13G007700 Manihot esculenta HOM05D002685 ORTHO05D001487 1.0e-16 92.0 344 36.6
SGA_v2.0_scaffold68G22835 Striga asiatica HOM05D002685 ORTHO05D001487 1.0e-16 92.0 168 40.5
Aqoxy3G01654 Aquilegia oxysepala HOM05D002685 ORTHO05D001487 1.7e-16 91.3 170 40.6
Gorai.001G075700 Gossypium raimondii HOM05D002685 ORTHO05D001487 2.3e-16 90.9 139 42.4
Nitab4.5_0004556g0030 Nicotiana tabacum HOM05D002685 ORTHO05D001487 3.9e-16 90.1 351 34.8
Sed0004040 Sechium edule HOM05D002685 ORTHO05D001487 3.9e-16 90.1 130 44.6
PSO478G3563 Papaver somniferum HOM05D002685 ORTHO05D001487 5.1e-16 89.7 357 33.3
PGSC0003DMG400010462 Solanum tuberosum HOM05D002685 ORTHO05D001487 5.1e-16 89.7 136 41.2
SGA_v2.0_scaffold96G29063 Striga asiatica HOM05D002685 ORTHO05D001487 5.1e-16 89.7 341 29.9
HanXRQChr12g0362251 Helianthus annuus HOM05D002685 ORTHO05D001487 6.6e-16 89.4 126 44.4
unitig_62.g23633 Utricularia gibba HOM05D002685 ORTHO05D001487 6.6e-16 89.4 134 44.8
PSO017G3972 Papaver somniferum HOM05D002685 ORTHO05D001487 8.7e-16 89.0 121 44.6
SHI04197 Sapria himalayana HOM05D002685 ORTHO05D001487 8.7e-16 89.0 121 48.8
COL.COLO4_24722 Corchorus olitorius HOM05D002685 ORTHO05D001487 2.5e-15 87.4 349 28.4
Dinv11706 Davidia involucrata HOM05D002685 ORTHO05D001487 5.6e-15 86.3 107 49.5
Migut.K01013 Erythranthe guttata HOM05D002685 ORTHO05D001487 9.6e-15 85.5 366 32.2
Nn8g41102 Nelumbo nucifera HOM05D002685 ORTHO05D001487 9.6e-15 85.5 351 27.4
Lsat_1_v5_gn_4_2061 Lactuca sativa HOM05D002685 ORTHO05D001487 1.3e-14 85.1 358 28.5
Aa31LG7G9970 Aethionema arabicum HOM05D002685 ORTHO05D001487 1.6e-14 84.7 126 44.4
ATR0582G338 Amborella trichopoda HOM05D002685 ORTHO05D001487 2.1e-14 84.3 156 40.4
CDE05G0851 Ceratophyllum demersum HOM05D002685 ORTHO05D001487 2.1e-14 84.3 146 39.0
CDE05G2679 Ceratophyllum demersum HOM05D002685 ORTHO05D001487 4.8e-14 83.2 134 41.0
FvH4_4g23260 Fragaria vesca HOM05D002685 ORTHO05D001487 4.8e-14 83.2 154 38.3
FAN12G0439 Fragaria x ananassa HOM05D002685 ORTHO05D001487 4.8e-14 83.2 154 38.3
Ciclev10031823m.g Citrus clementina HOM05D002685 ORTHO05D001487 1.4e-13 81.6 393 32.3
FAN17G2673 Fragaria x ananassa HOM05D002685 ORTHO05D001487 1.4e-13 81.6 228 32.9
Oeu058906.1 Olea europaea HOM05D002685 ORTHO05D001487 1.8e-13 81.3 123 42.3
Lj1C600T10 Lonicera japonica HOM05D002685 ORTHO05D001487 2.4e-13 80.9 377 33.4
Ah.02g131020 Amaranthus hybridus HOM05D002685 ORTHO05D001487 9.0e-13 79.0 372 31.7
HanXRQChr14g0451041 Helianthus annuus HOM05D002685 ORTHO05D001487 1.2e-12 78.6 383 25.6
Sopen10g033620 Solanum pennellii HOM05D002685 ORTHO05D001487 2.0e-12 77.8 122 41.0
TPR.G38293 Trifolium pratense HOM05D002685 ORTHO05D001487 2.6e-12 77.4 316 42.4
AUR62005663 Chenopodium quinoa HOM05D002685 ORTHO05D001487 3.4e-12 77.0 379 30.3
AUR62028890 Chenopodium quinoa HOM05D002685 ORTHO05D001487 3.4e-12 77.0 378 33.9
Nn3g18831 Nelumbo nucifera HOM05D002685 ORTHO05D001487 4.5e-12 76.6 120 43.3
THA.LOC104801613 Tarenaya hassleriana HOM05D002685 ORTHO05D001487 1.3e-11 75.1 283 31.8
TAR622G0718 Trochodendron aralioides HOM05D002685 ORTHO05D001487 1.7e-11 74.7 302 29.1
DCAR_024650 Daucus carota HOM05D002685 ORTHO05D001487 3.8e-11 73.6 386 31.1
Lj2P1097T8 Lonicera japonica HOM05D002685 ORTHO05D001487 3.8e-11 73.6 111 39.6
ECA234G0665 Erigeron canadensis HOM05D002685 ORTHO05D001487 4.9e-11 73.2 125 38.4
MSTRG.15538 Avicennia marina HOM05D002685 ORTHO05D001487 1.9e-10 71.2 367 32.7
EL10Ac6g13549 Beta vulgaris HOM05D002685 ORTHO05D001487 1.9e-10 71.2 369 31.2
QL05p082393 Quercus lobata HOM05D002685 ORTHO05D001487 9.3e-10 68.9 113 41.6
HPP92_006390 Vanilla planifolia HOM05D002685 ORTHO05D001487 9.3e-10 68.9 190 31.6
QL03p029584 Quercus lobata HOM05D002685 ORTHO05D001487 3.5e-09 67.0 114 40.4
SEGI_38563 Sequoiadendron giganteum HOM05D014410 ORTHO05D001487 1.8e-08 64.7 151 35.1
Zm00001eb170080 Zea mays HOM05D018687 ORTHO05D001487 3.0e-08 63.9 160 30.0
SEGI_19997 Sequoiadendron giganteum HOM05D014410 ORTHO05D001487 3.9e-08 63.5 156 34.0
Psat4g157480 Pisum sativum HOM05D006269 ORTHO05D001487 5.1e-08 63.2 130 36.9
Lalb_Chr10g0096511 Lupinus albus HOM05D006269 ORTHO05D001487 6.7e-08 62.8 132 34.1
Thhalv10008770m.g Eutrema salsugineum HOM05D002685 ORTHO05D001487 8.7e-08 62.4 128 30.5
Os11g0506800 Oryza sativa ssp. japonica HOM05D018687 ORTHO05D001487 8.7e-08 62.4 131 31.3
SEGI_30715 Sequoiadendron giganteum HOM05D014410 ORTHO05D001487 1.5e-07 61.6 141 34.8
Carub.0001s1174 Capsella rubella HOM05D002685 ORTHO05D001487 1.9e-07 61.2 107 36.4
AL1G23310 Arabidopsis lyrata HOM05D002685 ORTHO05D001487 3.3e-07 60.5 130 32.3
CARHR012420 Cardamine hirsuta HOM05D002685 ORTHO05D001487 3.3e-07 60.5 132 31.8
FAN10G2074 Fragaria x ananassa HOM05D006269 ORTHO05D001487 3.3e-07 60.5 114 38.6
FAN10G3724 Fragaria x ananassa HOM05D006269 ORTHO05D001487 3.3e-07 60.5 114 38.6
PGR031G2857 Punica granatum HOM05D006269 ORTHO05D001487 3.3e-07 60.5 151 35.1
Cpa.g.sc184.9 Carica papaya HOM05D006269 ORTHO05D001487 4.3e-07 60.1 109 40.4
AUR62021868 Chenopodium quinoa HOM05D002685 ORTHO05D001487 4.3e-07 60.1 122 34.4
PSO210G2053 Papaver somniferum HOM05D002685 ORTHO05D001487 4.3e-07 60.1 105 36.2
SEGI_14808 Sequoiadendron giganteum HOM05D014410 ORTHO05D001487 4.3e-07 60.1 180 32.2
SEGI_15116 Sequoiadendron giganteum HOM05D006269 ORTHO05D001487 4.3e-07 60.1 157 29.9
TAR374G0506 Trochodendron aralioides HOM05D006269 ORTHO05D001487 4.3e-07 60.1 111 36.0
FAN06G2203 Fragaria x ananassa HOM05D006269 ORTHO05D001487 5.6e-07 59.7 114 37.7
QL05p069750 Quercus lobata HOM05D002685 ORTHO05D001487 5.6e-07 59.7 115 34.8
FvH4_7g15690 Fragaria vesca HOM05D006269 ORTHO05D001487 9.6e-07 58.9 114 37.7
FAN03G1935 Fragaria x ananassa HOM05D006269 ORTHO05D001487 9.6e-07 58.9 111 37.8
FAN06G3724 Fragaria x ananassa HOM05D006269 ORTHO05D001487 9.6e-07 58.9 114 37.7
SEGI_09232 Sequoiadendron giganteum HOM05D014410 ORTHO05D001487 9.6e-07 58.9 161 31.7
Zm00001eb252920 Zea mays HOM05D002685 ORTHO05D001487 9.6e-07 58.9 131 32.8
Zm00001eb380100 Zea mays HOM05D006269 ORTHO05D001487 9.6e-07 58.9 124 37.1
Dinv07400 Davidia involucrata HOM05D002685 ORTHO05D001487 1.3e-06 58.5 113 35.4
Sopen04g006850 Solanum pennellii HOM05D002685 ORTHO05D001487 1.3e-06 58.5 125 32.8
Ca_23548_v3 Cicer arietinum L. HOM05D006269 ORTHO05D001487 1.6e-06 58.2 125 36.8
QL05p033962 Quercus lobata HOM05D002685 ORTHO05D001487 1.6e-06 58.2 104 35.6
GSVIVG01027028001 Vitis vinifera HOM05D006269 ORTHO05D001487 1.6e-06 58.2 126 35.7
AT1G12060 Arabidopsis thaliana HOM05D002685 ORTHO05D001487 2.1e-06 57.8 112 36.6
PGSC0003DMG400023607 Solanum tuberosum HOM05D002685 ORTHO05D001487 2.1e-06 57.8 125 32.8
MSTRG.16026 Avicennia marina HOM05D002685 ORTHO05D001487 2.8e-06 57.4 123 35.8
PSO302G0162 Papaver somniferum HOM05D002685 ORTHO05D001487 2.8e-06 57.4 105 35.2
QL04p034904 Quercus lobata HOM05D006269 ORTHO05D001487 2.8e-06 57.4 147 32.0
Sabra16G0017000 Salix brachista HOM05D002685 ORTHO05D001487 2.8e-06 57.4 122 31.1
MD01G1073600 Malus domestica HOM05D006269 ORTHO05D001487 3.7e-06 57.0 134 33.6
Zm00001eb237960 Zea mays HOM05D006269 ORTHO05D001487 3.7e-06 57.0 154 32.5
Zm00001eb364900 Zea mays HOM05D006269 ORTHO05D001487 3.7e-06 57.0 124 36.3
Cfa000108 Carpinus fangiana HOM05D002685 ORTHO05D001487 4.8e-06 56.6 119 33.6
COL.COLO4_06360 Corchorus olitorius HOM05D006269 ORTHO05D001487 4.8e-06 56.6 134 33.6
Ciclev10018596m.g Citrus clementina HOM05D006269 ORTHO05D001487 6.2e-06 56.2 128 35.2
Glyma.07G061500 Glycine max HOM05D006269 ORTHO05D001487 6.2e-06 56.2 126 34.1
Lj2C262G3 Lonicera japonica HOM05D005487 ORTHO05D007280 6.2e-06 56.2 127 33.9
Medtr8g028265 Medicago truncatula HOM05D006269 ORTHO05D001487 6.2e-06 56.2 136 33.8
Nn4g26113 Nelumbo nucifera HOM05D002685 ORTHO05D001487 6.2e-06 56.2 87 44.8
Zm00001eb342150 Zea mays HOM05D018687 ORTHO05D001487 6.2e-06 56.2 196 28.1
Ah.09g234250 Amaranthus hybridus HOM05D002685 ORTHO05D001487 8.1e-06 55.8 97 34.0


User provided reference genes

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