Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G281000 Glycine max HOM05D004418 ORTHO05D005222 3.1e-165 585.1 305 100.0
Glyma.08G256900 Glycine max HOM05D004418 ORTHO05D005222 8.2e-142 507.3 306 88.2
Phvul.008G020100 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 1.8e-128 463.0 306 82.0
VMungo1383G2014 Vigna mungo HOM05D004418 ORTHO05D005222 1.7e-126 456.4 300 82.3
Lj1g0022779 Lotus japonicus HOM05D004418 ORTHO05D005222 3.5e-116 422.2 278 79.9
arahy.Tifrunner.gnm1.ann1.FZV4HQ Arachis hypogaea HOM05D004418 ORTHO05D005222 1.0e-115 420.6 309 76.1
arahy.Tifrunner.gnm1.ann1.I4UW8B Arachis hypogaea HOM05D004418 ORTHO05D005222 1.0e-115 420.6 309 76.1
TPR.G4552 Trifolium pratense HOM05D004418 ORTHO05D005222 4.1e-109 398.7 310 72.6
Psat3g190400 Pisum sativum HOM05D004418 ORTHO05D005222 2.3e-107 392.9 308 70.8
Glyma.13G046900 Glycine max HOM05D004418 ORTHO05D005222 1.8e-104 383.3 314 71.3
Lalb_Chr10g0092251 Lupinus albus HOM05D004418 ORTHO05D005222 3.1e-104 382.5 303 71.9
Medtr7g018370 Medicago truncatula HOM05D004418 ORTHO05D005222 5.4e-101 371.7 271 75.3
Phvul.004G062900 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 2.0e-100 369.8 303 70.3
Thecc.04G137500 Theobroma cacao HOM05D004418 ORTHO05D005222 2.7e-100 369.4 309 68.9
Glyma.19G045400 Glycine max HOM05D004418 ORTHO05D005222 1.7e-99 366.7 320 67.5
Prupe.3G239700 Prunus persica HOM05D004418 ORTHO05D005222 3.0e-99 365.9 308 70.1
Cfa007945 Carpinus fangiana HOM05D004418 ORTHO05D005222 1.9e-98 363.2 312 68.6
Lalb_Chr06g0174671 Lupinus albus HOM05D004418 ORTHO05D005222 5.2e-96 355.1 299 68.6
Medtr6g017240 Medicago truncatula HOM05D004418 ORTHO05D005222 2.6e-95 352.8 305 70.2
CiPaw.04G040400 Carya illinoinensis HOM05D004418 ORTHO05D005222 3.4e-95 352.4 307 66.8
QL02p052558 Quercus lobata HOM05D004418 ORTHO05D005222 1.3e-94 350.5 310 67.4
VMungo0464G1669 Vigna mungo HOM05D004418 ORTHO05D005222 1.3e-94 350.5 308 67.2
MD17G1074300 Malus domestica HOM05D004418 ORTHO05D005222 4.1e-93 345.5 308 66.6
CiPaw.03G059700 Carya illinoinensis HOM05D004418 ORTHO05D005222 5.4e-93 345.1 300 67.0
Lj2g0026691 Lotus japonicus HOM05D004418 ORTHO05D005222 1.3e-91 340.5 287 68.6
TPR.G32452 Trifolium pratense HOM05D004418 ORTHO05D005222 3.3e-90 335.9 305 66.2
COL.COLO4_16191 Corchorus olitorius HOM05D004418 ORTHO05D005222 2.1e-89 333.2 245 75.1
Potri.004G102200 Populus trichocarpa HOM05D004418 ORTHO05D005222 4.0e-88 328.9 322 61.8
Potri.017G112600 Populus trichocarpa HOM05D004418 ORTHO05D005222 7.6e-87 324.7 322 62.1
RcHm_v2.0_Chr2g0163131 Rosa chinensis HOM05D004418 ORTHO05D005222 2.9e-86 322.8 308 63.3
Manes.01G108300 Manihot esculenta HOM05D004418 ORTHO05D005222 4.9e-86 322.0 244 71.7
MD09G1084800 Malus domestica HOM05D004418 ORTHO05D005222 1.1e-85 320.9 303 63.7
GSVIVG01036443001 Vitis vinifera HOM05D004418 ORTHO05D005222 9.2e-85 317.8 302 64.2
Sabra04G0078200 Salix brachista HOM05D004418 ORTHO05D005222 2.7e-84 316.2 322 61.2
Haze_14129 Corylus avellana HOM05D004418 ORTHO05D005222 3.5e-84 315.8 248 73.0
FAN14G2637 Fragaria x ananassa HOM05D004418 ORTHO05D005222 3.5e-84 315.8 309 62.8
Gohir.A07G071400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 6.0e-84 315.1 301 63.1
FvH4_6g45350 Fragaria vesca HOM05D004418 ORTHO05D005222 3.9e-83 312.4 309 62.1
FAN05G3990 Fragaria x ananassa HOM05D004418 ORTHO05D005222 5.1e-83 312.0 307 62.5
TAR462G0001 Trochodendron aralioides HOM05D004418 ORTHO05D005222 8.6e-83 311.2 299 63.5
ClCG11G005360 Citrullus lanatus HOM05D004418 ORTHO05D005222 3.3e-82 309.3 306 62.4
CsaV3_5G039140 Cucumis sativus L. HOM05D004418 ORTHO05D005222 4.3e-82 308.9 308 61.0
FAN02G0751 Fragaria x ananassa HOM05D004418 ORTHO05D005222 7.3e-82 308.1 303 62.7
ClCG05G012070 Citrullus lanatus HOM05D004418 ORTHO05D005222 9.6e-82 307.8 303 61.7
Sed0007454 Sechium edule HOM05D004418 ORTHO05D005222 1.2e-81 307.4 296 62.2
Cpa.g.sc179.25 Carica papaya HOM05D004418 ORTHO05D005222 2.8e-81 306.2 325 60.9
Gohir.D07G075900 Gossypium hirsutum HOM05D004418 ORTHO05D005222 1.1e-80 304.3 301 61.1
Gorai.001G080100 Gossypium raimondii HOM05D004418 ORTHO05D005222 4.0e-80 302.4 301 60.8
Cc07_g09010 Coffea canephora HOM05D004418 ORTHO05D005222 8.9e-80 301.2 289 64.4
CANSAT64G2567 Cannabis sativa HOM05D004418 ORTHO05D005222 1.2e-79 300.8 245 69.0
Dinv34848 Davidia involucrata HOM05D004418 ORTHO05D005222 2.0e-79 300.1 273 66.3
CsaV3_3G020330 Cucumis sativus L. HOM05D004418 ORTHO05D005222 2.2e-78 296.6 301 58.5
Ciclev10012140m.g Citrus clementina HOM05D004418 ORTHO05D005222 6.4e-78 295.0 347 57.6
MELO3C023762.2 Cucumis melo HOM05D004418 ORTHO05D005222 1.1e-77 294.3 301 58.1
Sopen02g030440 Solanum pennellii HOM05D004418 ORTHO05D005222 3.2e-77 292.7 315 58.1
Nn4g23746 Nelumbo nucifera HOM05D004418 ORTHO05D005222 1.3e-75 287.3 303 59.1
PGSC0003DMG400024185 Solanum tuberosum HOM05D004418 ORTHO05D005222 2.3e-75 286.6 322 54.3
Duzib133G1448 Durio zibethinus HOM05D004418 ORTHO05D005222 3.9e-75 285.8 266 64.7
Solyc02g085750.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 3.9e-75 285.8 312 55.8
Sopen02g014090 Solanum pennellii HOM05D004418 ORTHO05D005222 3.9e-75 285.8 316 53.8
Nitab4.5_0004118g0100 Nicotiana tabacum HOM05D004418 ORTHO05D005222 6.6e-75 285.0 325 56.0
Psat1g012960 Pisum sativum HOM05D004418 ORTHO05D005222 8.7e-75 284.6 265 66.0
Solyc02g063030.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 3.3e-74 282.7 317 53.3
Nitab4.5_0000628g0180 Nicotiana tabacum HOM05D004418 ORTHO05D005222 1.3e-73 280.8 308 56.2
Atru.chr8.826 Acer truncatum HOM05D004418 ORTHO05D005222 2.1e-73 280.0 299 60.5
Oeu030758.1 Olea europaea HOM05D004418 ORTHO05D005222 4.8e-73 278.9 217 70.0
Gohir.D11G168666 Gossypium hirsutum HOM05D004418 ORTHO05D005222 1.1e-72 277.7 296 60.5
Gohir.A11G162400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 1.8e-72 276.9 296 59.8
Nn3g17760 Nelumbo nucifera HOM05D004418 ORTHO05D005222 4.0e-72 275.8 302 58.9
Actinidia15868 Actinidia chinensis HOM05D004418 ORTHO05D005222 5.3e-72 275.4 231 68.0
Gorai.007G180200 Gossypium raimondii HOM05D004418 ORTHO05D005222 6.9e-72 275.0 294 59.2
CAN.G358.137 Capsicum annuum HOM05D004418 ORTHO05D005222 9.0e-72 274.6 244 63.5
Sed0007873 Sechium edule HOM05D004418 ORTHO05D005222 1.2e-71 274.2 301 57.5
Hma1.2p1_0550F.1_g177250 Hydrangea macrophylla HOM05D004418 ORTHO05D005222 2.0e-71 273.5 299 60.9
Nitab4.5_0008781g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 2.6e-71 273.1 266 62.4
arahy.Tifrunner.gnm1.ann1.SB4BUV Arachis hypogaea HOM05D004418 ORTHO05D005222 3.4e-71 272.7 314 54.8
CAN.G23.16 Capsicum annuum HOM05D004418 ORTHO05D005222 4.5e-71 272.3 338 51.2
Sabra17G0093300 Salix brachista HOM05D004418 ORTHO05D005222 4.5e-71 272.3 259 63.3
Eucgr.F02480 Eucalyptus grandis HOM05D004418 ORTHO05D005222 2.2e-70 270.0 320 55.6
Oeu052993.1 Olea europaea HOM05D004418 ORTHO05D005222 2.2e-70 270.0 222 65.8
Actinidia36309 Actinidia chinensis HOM05D004418 ORTHO05D005222 6.4e-70 268.5 289 58.8
Dinv33929 Davidia involucrata HOM05D004418 ORTHO05D005222 1.4e-69 267.3 275 64.4
CSS0011812 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 4.2e-69 265.8 324 56.2
TWI75G1693 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 6.0e-68 261.9 298 55.7
MSTRG.23562 Avicennia marina HOM05D004418 ORTHO05D005222 8.7e-67 258.1 305 54.4
Lj2C447G3 Lonicera japonica HOM05D006042 ORTHO05D007658 1.9e-66 256.9 235 64.3
Aqoxy3G03921 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 3.7e-65 252.7 344 51.2
TAR278G0004 Trochodendron aralioides HOM05D004418 ORTHO05D005222 4.8e-65 252.3 297 55.6
MELO3C022089.2 Cucumis melo HOM05D004418 ORTHO05D005222 1.5e-63 247.3 182 72.5
DCAR_017217 Daucus carota HOM05D004418 ORTHO05D005222 2.2e-62 243.4 300 54.0
EL10Ac2g04606 Beta vulgaris HOM05D004418 ORTHO05D005222 1.9e-61 240.4 280 55.0
PGR042G3608 Punica granatum HOM05D004418 ORTHO05D005222 6.0e-60 235.3 306 54.2
Aqoxy3G00366 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 1.3e-59 234.2 290 52.4
THA.LOC104803001 Tarenaya hassleriana HOM05D004418 ORTHO05D005222 5.1e-59 232.3 292 51.0
Peaxi162Scf01327g00136 Petunia axillaris HOM05D004418 ORTHO05D005222 3.3e-58 229.6 282 54.3
Ah.10g037550 Amaranthus hybridus HOM05D004418 ORTHO05D005222 1.3e-57 227.6 259 55.6
CSS0030087 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 1.6e-57 227.3 343 51.9
Hund13733 Selenicereus undatus HOM05D004418 ORTHO05D005222 4.0e-56 222.6 258 55.0
Nitab4.5_0007207g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 1.2e-55 221.1 333 48.0
TWI79G1555 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 3.4e-55 219.5 320 48.1
Migut.L00303 Erythranthe guttata HOM05D004418 ORTHO05D005222 2.9e-54 216.5 271 57.6
MSTRG.3576 Avicennia marina HOM05D004418 ORTHO05D005222 3.2e-53 213.0 311 46.6
CSS0000095 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 9.3e-53 211.5 279 55.6
Peaxi162Scf00501g00012 Petunia axillaris HOM05D004418 ORTHO05D005222 1.2e-52 211.1 323 47.1
HanXRQChr12g0376561 Helianthus annuus HOM05D004418 ORTHO05D005222 1.0e-51 208.0 292 51.7
Aa31LG5G13000 Aethionema arabicum HOM05D004418 ORTHO05D005222 3.0e-51 206.5 241 53.9
Sp6g28100 Schrenkiella parvula HOM05D004418 ORTHO05D005222 3.9e-51 206.1 245 55.9
SGA_v2.0_scaffold33G13429 Striga asiatica HOM05D004418 ORTHO05D005222 1.1e-50 204.5 311 46.9
Thhalv10014096m.g Eutrema salsugineum HOM05D004418 ORTHO05D005222 3.3e-50 203.0 309 48.5
AT5G16030 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 4.3e-50 202.6 228 58.8
ECA246G2173 Erigeron canadensis HOM05D004418 ORTHO05D005222 4.3e-50 202.6 277 50.5
BcaB01g05008 Brassica carinata HOM05D004418 ORTHO05D005222 5.7e-50 202.2 249 54.2
BcaB08g36881 Brassica carinata HOM05D004418 ORTHO05D005222 3.7e-49 199.5 255 54.9
BraA03t10082Z Brassica rapa HOM05D004418 ORTHO05D005222 1.1e-48 198.0 334 45.2
A10p23020 Brassica napus HOM05D004418 ORTHO05D005222 2.4e-48 196.8 262 53.1
BraA10t44371Z Brassica rapa HOM05D004418 ORTHO05D005222 2.4e-48 196.8 262 53.1
AL6G26910 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 5.3e-48 195.7 324 47.2
A03p07540 Brassica napus HOM05D004418 ORTHO05D005222 1.5e-47 194.1 317 45.7
MBI09_g05206_MAGBIO Magnolia biondii HOM05D004418 ORTHO05D005222 2.0e-47 193.7 283 47.7
PSO017G3409 Papaver somniferum HOM05D004418 ORTHO05D005222 2.6e-47 193.4 294 46.6
PGR004G1179 Punica granatum HOM05D004418 ORTHO05D005222 3.4e-47 193.0 242 54.1
C03p08770 Brassica napus HOM05D004418 ORTHO05D005222 4.5e-47 192.6 317 45.7
BcaC04g18914 Brassica carinata HOM05D004418 ORTHO05D005222 5.9e-47 192.2 337 43.6
BolC9t58946H Brassica oleracea HOM05D004418 ORTHO05D005222 7.6e-47 191.8 333 44.4
PSO478G2162 Papaver somniferum HOM05D004418 ORTHO05D005222 1.0e-46 191.4 294 46.3
BolC3t13373H Brassica oleracea HOM05D004418 ORTHO05D005222 2.9e-46 189.9 324 44.8
C09p60990 Brassica napus HOM05D004418 ORTHO05D005222 3.8e-46 189.5 333 44.1
CARHR076500 Cardamine hirsuta HOM05D004418 ORTHO05D005222 6.5e-46 188.7 213 53.1
Carub.0006s1422 Capsella rubella HOM05D004418 ORTHO05D005222 8.5e-46 188.3 250 54.4
Migut.H00200 Erythranthe guttata HOM05D004418 ORTHO05D005222 8.5e-46 188.3 286 49.0
Aa31LG11G13580 Aethionema arabicum HOM05D004418 ORTHO05D005222 2.5e-45 186.8 308 47.7
BcaNung02220 Brassica carinata HOM05D004418 ORTHO05D005222 3.2e-45 186.4 246 52.8
Lj4A194T37 Lonicera japonica HOM05D004418 ORTHO05D005222 7.9e-44 181.8 223 55.2
AL3G11860 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 2.3e-43 180.3 288 47.6
BcaC03g18465 Brassica carinata HOM05D004418 ORTHO05D005222 1.1e-42 177.9 264 49.2
C02p08130 Brassica napus HOM05D004418 ORTHO05D005222 1.1e-42 177.9 264 49.2
SalBow5G1629 Salvia bowleyana HOM05D004418 ORTHO05D005222 1.5e-42 177.6 285 44.9
CARHR197280 Cardamine hirsuta HOM05D004418 ORTHO05D005222 3.3e-42 176.4 310 45.8
arahy.Tifrunner.gnm1.ann1.554YPX Arachis hypogaea HOM05D004418 ORTHO05D005222 4.3e-42 176.0 313 41.5
AT3G02500 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 2.2e-41 173.7 291 45.4
A02p03360 Brassica napus HOM05D004418 ORTHO05D005222 1.4e-40 171.0 330 40.6
BolC2t06735H Brassica oleracea HOM05D004418 ORTHO05D005222 9.1e-40 168.3 280 46.4
BraA02t05307Z Brassica rapa HOM05D004418 ORTHO05D005222 3.4e-39 166.4 331 40.5
Carub.0003s0161 Capsella rubella HOM05D004418 ORTHO05D005222 1.7e-38 164.1 278 46.0
BcaC01g04442 Brassica carinata HOM05D004418 ORTHO05D005222 6.5e-38 162.2 208 51.0
RcHm_v2.0_Chr4g0404491 Rosa chinensis HOM05D004418 ORTHO05D005222 1.4e-37 161.0 111 76.6
Oeu052991.1 Olea europaea HOM05D004418 ORTHO05D005222 5.5e-37 159.1 114 71.9
vmacro05572 Vaccinium macrocarpon HOM05D004418 ORTHO05D005222 9.4e-37 158.3 252 48.8
Lsat_1_v5_gn_3_80201 Lactuca sativa HOM05D004418 ORTHO05D005222 1.0e-35 154.8 233 50.2
Ah.16g101950 Amaranthus hybridus HOM05D004418 ORTHO05D005222 5.1e-35 152.5 156 54.5
BraA03t12466Z Brassica rapa HOM05D004418 ORTHO05D005222 4.1e-32 142.9 286 40.2
A03p32980 Brassica napus HOM05D004418 ORTHO05D005222 5.3e-32 142.5 286 40.2
BolC3t16277H Brassica oleracea HOM05D004418 ORTHO05D005222 6.9e-32 142.1 286 40.2
C03p40110 Brassica napus HOM05D004418 ORTHO05D005222 3.4e-31 139.8 286 39.9
SalBow3G2364 Salvia bowleyana HOM05D004418 ORTHO05D005222 2.9e-30 136.7 281 38.8
SalBow3G3548 Salvia bowleyana HOM05D004418 ORTHO05D005222 3.8e-30 136.3 264 40.9
BcaC01g04556 Brassica carinata HOM05D004418 ORTHO05D005222 3.2e-29 133.3 285 40.4
ATR0686G091 Amborella trichopoda HOM05D004418 ORTHO05D005222 2.8e-25 120.2 172 49.4
Sc11g0008220 Simmondsia chinensis HOM05D004418 ORTHO05D005222 8.2e-25 118.6 144 52.8
SGA_v2.0_scaffold49G18089 Striga asiatica HOM05D004418 ORTHO05D005222 6.5e-22 109.0 238 40.3
unitig_32.g11894 Utricularia gibba HOM05D004418 ORTHO05D005222 4.8e-17 92.8 64 71.9
CAN.G144.13 Capsicum annuum HOM05D004418 ORTHO05D005222 6.3e-17 92.4 63 77.8
Sed0005383 Sechium edule HOM05D004418 ORTHO05D005222 2.4e-08 63.9 289 30.4


User provided reference genes

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