Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G274100 Glycine max HOM05D003991 ORTHO05D004883 0.0e+00 1507.3 788 100.0
Glyma.08G251400 Glycine max HOM05D003991 ORTHO05D004883 0.0e+00 1469.9 788 97.6
VMungo1383G3466 Vigna mungo HOM05D003991 ORTHO05D004883 0.0e+00 1369.0 792 91.5
Phvul.008G026400 Phaseolus vulgaris HOM05D003991 ORTHO05D004883 0.0e+00 1359.0 794 90.8
Ca_06908_v3 Cicer arietinum L. HOM05D003991 ORTHO05D004883 0.0e+00 1284.6 796 85.7
TPR.G23393 Trifolium pratense HOM05D003991 ORTHO05D004883 0.0e+00 1269.2 793 84.2
Lj1g0022443 Lotus japonicus HOM05D003991 ORTHO05D004883 0.0e+00 1268.1 797 85.3
Lalb_Chr10g0092711 Lupinus albus HOM05D003991 ORTHO05D004883 0.0e+00 1256.9 797 84.1
Psat3g203280 Pisum sativum HOM05D003991 ORTHO05D004883 0.0e+00 1236.9 794 82.2
Medtr7g016900 Medicago truncatula HOM05D003991 ORTHO05D004883 0.0e+00 1231.9 790 82.8
arahy.Tifrunner.gnm1.ann1.YA99EJ Arachis hypogaea HOM05D003991 ORTHO05D004883 0.0e+00 1223.4 791 82.2
arahy.Tifrunner.gnm1.ann1.T6I3L8 Arachis hypogaea HOM05D003991 ORTHO05D004883 0.0e+00 1196.0 801 80.0
CANSAT64G1645 Cannabis sativa HOM05D003991 ORTHO05D004883 0.0e+00 1169.5 808 75.9
Ciclev10011098m.g Citrus clementina HOM05D003991 ORTHO05D004883 0.0e+00 1166.8 805 76.9
Prupe.3G248800 Prunus persica HOM05D003991 ORTHO05D004883 0.0e+00 1154.8 800 76.6
TWI32G1311 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 0.0e+00 1152.1 802 76.6
Manes.01G103600 Manihot esculenta HOM05D003991 ORTHO05D004883 0.0e+00 1148.3 801 75.3
Cfa007697 Carpinus fangiana HOM05D003991 ORTHO05D004883 0.0e+00 1147.1 794 77.3
TWI34G0665 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 0.0e+00 1146.7 798 76.4
Manes.02G059600 Manihot esculenta HOM05D003991 ORTHO05D004883 0.0e+00 1143.3 799 75.2
Potri.017G100300 Populus trichocarpa HOM05D003991 ORTHO05D004883 0.0e+00 1141.3 804 75.7
CiPaw.03G082800 Carya illinoinensis HOM05D003991 ORTHO05D004883 0.0e+00 1140.9 782 77.5
Duzib138G0045 Durio zibethinus HOM05D003991 ORTHO05D004883 0.0e+00 1139.0 813 74.2
MD17G1065900 Malus domestica HOM05D003991 ORTHO05D004883 0.0e+00 1138.6 801 76.0
Gorai.001G207000 Gossypium raimondii HOM05D003991 ORTHO05D004883 0.0e+00 1136.7 802 75.9
Eucgr.I02064 Eucalyptus grandis HOM05D003991 ORTHO05D004883 0.0e+00 1134.4 791 76.0
Lj4A124G55 Lonicera japonica HOM05D003991 ORTHO05D004883 0.0e+00 1134.4 799 75.1
COL.COLO4_10252 Corchorus olitorius HOM05D003991 ORTHO05D004883 0.0e+00 1133.6 814 73.8
MD09G1074500 Malus domestica HOM05D003991 ORTHO05D004883 0.0e+00 1125.5 800 75.1
TAR622G0714 Trochodendron aralioides HOM05D003991 ORTHO05D004883 0.0e+00 1119.8 805 74.7
MELO3C026296.2 Cucumis melo HOM05D003991 ORTHO05D004883 0.0e+00 1118.6 805 73.9
Haze_14380 Corylus avellana HOM05D003991 ORTHO05D004883 0.0e+00 1116.3 869 71.0
FAN05G5440 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1116.3 804 74.3
FAN09G2010 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1116.3 789 74.9
Atru.chr8.642 Acer truncatum HOM05D003991 ORTHO05D004883 0.0e+00 1115.9 801 75.2
CSS0001564 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 0.0e+00 1115.5 805 73.4
FvH4_6g46350 Fragaria vesca HOM05D003991 ORTHO05D004883 0.0e+00 1115.5 789 75.0
Hma1.2p1_1837F.1_g304750 Hydrangea macrophylla HOM05D003991 ORTHO05D004883 0.0e+00 1115.5 815 73.5
RcHm_v2.0_Chr2g0164851 Rosa chinensis HOM05D003991 ORTHO05D004883 0.0e+00 1114.8 800 74.6
CsaV3_4G010070 Cucumis sativus L. HOM05D003991 ORTHO05D004883 0.0e+00 1113.6 804 73.9
Potri.004G114600 Populus trichocarpa HOM05D003991 ORTHO05D004883 0.0e+00 1110.5 800 73.8
vmacro18126 Vaccinium macrocarpon HOM05D003991 ORTHO05D004883 0.0e+00 1109.0 844 70.6
Duzib133G0226 Durio zibethinus HOM05D003991 ORTHO05D004883 0.0e+00 1107.4 811 72.9
DCAR_011017 Daucus carota HOM05D003991 ORTHO05D004883 0.0e+00 1105.5 799 74.6
FAN14G3680 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1103.2 803 73.5
Sed0026923 Sechium edule HOM05D003991 ORTHO05D004883 0.0e+00 1094.3 803 72.4
FAN02G3988 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1089.7 803 73.0
Cpa.g.sc541.1 Carica papaya HOM05D003991 ORTHO05D004883 0.0e+00 1089.3 757 75.8
ClCG07G016050 Citrullus lanatus HOM05D003991 ORTHO05D004883 0.0e+00 1086.6 849 70.0
Aa31LG2G3750 Aethionema arabicum HOM05D003991 ORTHO05D004883 0.0e+00 1085.5 789 73.0
Thhalv10003675m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 0.0e+00 1085.1 787 73.1
Nn4g23516 Nelumbo nucifera HOM05D003991 ORTHO05D004883 0.0e+00 1077.8 795 72.5
Sp2g18130 Schrenkiella parvula HOM05D003991 ORTHO05D004883 0.0e+00 1077.8 789 73.0
AL7G51550 Arabidopsis lyrata HOM05D003991 ORTHO05D004883 0.0e+00 1077.0 799 71.6
AT5G38880 Arabidopsis thaliana HOM05D003991 ORTHO05D004883 0.0e+00 1077.0 799 71.7
PGR004G0075 Punica granatum HOM05D003991 ORTHO05D004883 0.0e+00 1076.6 793 72.8
Carub.0007s3697 Capsella rubella HOM05D003991 ORTHO05D004883 0.0e+00 1075.5 800 71.5
Lsat_1_v5_gn_3_96860 Lactuca sativa HOM05D003991 ORTHO05D004883 5.4e-312 1074.3 809 71.9
BcaC06g30850 Brassica carinata HOM05D003991 ORTHO05D004883 5.4e-312 1073.9 785 73.9
Rhsim08G0077400 Rhododendron simsii HOM05D003991 ORTHO05D004883 3.1e-310 1068.1 827 70.1
A06p39740 Brassica napus HOM05D003991 ORTHO05D004883 2.6e-309 1065.1 782 72.5
BraA06t26889Z Brassica rapa HOM05D003991 ORTHO05D004883 2.6e-309 1065.1 782 72.5
THA.LOC104822745 Tarenaya hassleriana HOM05D003991 ORTHO05D004883 3.4e-309 1064.7 807 71.9
EL10Ac2g04440 Beta vulgaris HOM05D003991 ORTHO05D004883 1.3e-308 1062.8 806 70.7
SGA_v2.0_scaffold148G36448 Striga asiatica HOM05D003991 ORTHO05D004883 1.7e-308 1062.4 791 71.0
HanXRQChr02g0043871 Helianthus annuus HOM05D003991 ORTHO05D004883 2.2e-308 1062.0 792 71.7
C07p38530 Brassica napus HOM05D003991 ORTHO05D004883 3.8e-308 1061.2 786 72.4
BolC7t44375H Brassica oleracea HOM05D003991 ORTHO05D004883 3.8e-308 1061.2 786 72.4
BcaC06g33715 Brassica carinata HOM05D003991 ORTHO05D004883 5.0e-308 1060.8 786 72.4
Thhalv10027646m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 1.6e-306 1055.8 796 70.5
Sabra17G0086400 Salix brachista HOM05D003991 ORTHO05D004883 8.0e-306 1053.5 899 65.4
Hund13674 Selenicereus undatus HOM05D003991 ORTHO05D004883 2.2e-303 1045.4 784 70.2
GSVIVG01036544001 Vitis vinifera HOM05D003991 ORTHO05D004883 1.1e-302 1043.1 673 80.8
Nitab4.5_0000154g0150 Nicotiana tabacum HOM05D003991 ORTHO05D004883 2.4e-302 1042.0 783 70.6
Cc07_g04500 Coffea canephora HOM05D003991 ORTHO05D004883 7.0e-302 1040.4 808 69.9
Peaxi162Scf01002g00121 Petunia axillaris HOM05D003991 ORTHO05D004883 1.6e-301 1039.3 784 70.2
MBI17_g07944_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 2.0e-301 1038.9 806 69.7
CAN.G427.3 Capsicum annuum HOM05D003991 ORTHO05D004883 3.5e-301 1038.1 798 69.3
TAR374G0063 Trochodendron aralioides HOM05D003991 ORTHO05D004883 2.2e-300 1035.4 761 72.8
AUR62009479 Chenopodium quinoa HOM05D003991 ORTHO05D004883 3.8e-300 1034.6 798 69.5
Sopen03g010790 Solanum pennellii HOM05D003991 ORTHO05D004883 1.1e-299 1033.1 799 68.8
MSTRG.2973 Avicennia marina HOM05D003991 ORTHO05D004883 4.2e-299 1031.2 786 69.3
PSO063G1675 Papaver somniferum HOM05D003991 ORTHO05D004883 4.2e-299 1031.2 805 68.3
PSO782G2666 Papaver somniferum HOM05D003991 ORTHO05D004883 1.6e-298 1029.2 805 68.3
SalBow1G2342 Salvia bowleyana HOM05D003991 ORTHO05D004883 8.3e-295 1016.9 790 68.9
AUR62023158 Chenopodium quinoa HOM05D003991 ORTHO05D004883 7.7e-293 1010.4 797 68.3
Thecc.04G106400 Theobroma cacao HOM05D003991 ORTHO05D004883 3.8e-292 1008.1 646 81.0
Solyc03g046590.3 Solanum lycopersicum HOM05D003991 ORTHO05D004883 4.2e-291 1004.6 799 67.2
Migut.O00382 Erythranthe guttata HOM05D003991 ORTHO05D004883 1.0e-289 1000.0 788 67.8
Gohir.A07G179600 Gossypium hirsutum HOM05D003991 ORTHO05D004883 6.3e-287 990.7 647 80.5
CiPaw.04G052100 Carya illinoinensis HOM05D003991 ORTHO05D004883 1.2e-285 986.5 797 68.8
Gohir.D07G186400 Gossypium hirsutum HOM05D003991 ORTHO05D004883 1.2e-285 986.5 647 79.8
ATR0605G126 Amborella trichopoda HOM05D003991 ORTHO05D004883 2.0e-285 985.7 799 66.1
C09p04400 Brassica napus HOM05D003991 ORTHO05D004883 7.7e-285 983.8 779 69.1
BraA09t36055Z Brassica rapa HOM05D003991 ORTHO05D004883 5.0e-284 981.1 777 68.7
ECA246G2054 Erigeron canadensis HOM05D003991 ORTHO05D004883 8.6e-284 980.3 797 67.6
BolC9t53370H Brassica oleracea HOM05D003991 ORTHO05D004883 8.3e-279 963.8 777 68.1
Ah.16g101030 Amaranthus hybridus HOM05D003991 ORTHO05D004883 4.1e-278 961.4 798 65.9
A09p04180 Brassica napus HOM05D003991 ORTHO05D004883 4.3e-275 951.4 778 66.5
Lsat_1_v5_gn_2_90201 Lactuca sativa HOM05D003991 ORTHO05D004883 9.5e-275 950.3 801 65.7
Nitab4.5_0001434g0090 Nicotiana tabacum HOM05D003991 ORTHO05D004883 2.6e-272 942.2 794 65.1
unitig_748.g8415 Utricularia gibba HOM05D003991 ORTHO05D004883 7.5e-272 940.6 785 64.7
CDE06G2000 Ceratophyllum demersum HOM05D003991 ORTHO05D004883 8.9e-265 917.1 806 60.5
Oeu007082.1 Olea europaea HOM05D003991 ORTHO05D004883 1.2e-264 916.8 836 61.1
BcaC04g23813 Brassica carinata HOM05D003991 ORTHO05D004883 1.9e-262 909.4 779 65.6
Aqoxy3G03722 Aquilegia oxysepala HOM05D003991 ORTHO05D004883 7.3e-259 897.5 786 64.5
ECA238G0416 Erigeron canadensis HOM05D003991 ORTHO05D004883 2.6e-248 862.4 784 61.0
SEGI_18103 Sequoiadendron giganteum HOM05D003991 ORTHO05D004883 2.6e-248 862.4 809 57.6
CSS0050035 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 2.9e-247 859.0 716 69.0
HanXRQChr07g0200011 Helianthus annuus HOM05D003991 ORTHO05D004883 2.1e-245 852.8 827 58.6
HPP92_025879 Vanilla planifolia HOM05D003991 ORTHO05D004883 5.1e-244 848.2 786 58.5
BcaC04g23825 Brassica carinata HOM05D003991 ORTHO05D004883 1.3e-226 790.4 633 68.4
Sc11g0008820 Simmondsia chinensis HOM05D003991 ORTHO05D004883 3.5e-221 772.3 650 66.0
SMO147G0301 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 9.3e-214 747.7 797 52.9
Actinidia26270 Actinidia chinensis HOM05D003991 ORTHO05D004883 7.9e-205 718.0 480 79.4
Pp3c9_9760 Physcomitrium patens HOM05D003991 ORTHO05D004883 1.7e-186 657.1 850 46.8
Pp3c9_9870 Physcomitrium patens HOM05D003991 ORTHO05D004883 1.7e-186 657.1 850 46.8
Mapoly0016s0130 Marchantia polymorpha HOM05D003991 ORTHO05D004883 2.7e-181 639.8 869 45.0
Pp3c15_7610 Physcomitrium patens HOM05D003991 ORTHO05D004883 3.0e-172 609.8 842 45.0
ECA285G0010 Erigeron canadensis HOM05D003991 ORTHO05D004883 1.9e-166 590.5 619 56.4
MBI17_g36999_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 2.5e-166 590.1 531 63.3
Pp3c10_8720 Physcomitrium patens HOM05D003991 ORTHO05D004883 6.1e-165 585.5 652 50.8
AagrBONN_evm.TU.Sc2ySwM_344.1887 Anthoceros agrestis HOM05D003991 ORTHO05D004883 5.2e-164 582.4 833 43.3
Zm00001eb311840 Zea mays HOM05D003991 ORTHO05D004883 2.9e-162 576.6 459 65.8
Zm00001eb099080 Zea mays HOM05D003991 ORTHO05D004883 4.7e-157 559.3 582 55.2
Os09g0386600 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D004883 1.1e-153 548.1 434 66.6
CARHR263670 Cardamine hirsuta HOM05D003991 ORTHO05D004883 4.0e-140 503.1 403 68.5
BcaB04g19523 Brassica carinata HOM05D003991 ORTHO05D004883 2.1e-112 411.0 597 46.4
BcaC04g23815 Brassica carinata HOM05D003991 ORTHO05D004883 4.1e-100 370.2 612 43.8
CBR_g36314 Chara braunii HOM05D003991 ORTHO05D004883 1.2e-80 305.4 762 32.2
Dinv33866 Davidia involucrata HOM05D003991 ORTHO05D004883 3.6e-80 303.9 209 76.1
arahy.Tifrunner.gnm1.ann1.VU455X Arachis hypogaea HOM05D003991 ORTHO05D004883 2.0e-78 298.1 207 76.3
Aa31LG1G6630 Aethionema arabicum HOM05D003991 ORTHO05D004883 3.1e-76 290.8 689 35.1
arahy.Tifrunner.gnm1.ann1.994D9I Arachis hypogaea HOM05D003991 ORTHO05D004883 2.0e-75 288.1 197 76.6
arahy.Tifrunner.gnm1.ann1.52AFQE Arachis hypogaea HOM05D003991 ORTHO05D004883 3.5e-75 287.3 197 76.6
arahy.Tifrunner.gnm1.ann1.YE0A4T Arachis hypogaea HOM05D003991 ORTHO05D004883 3.5e-75 287.3 197 76.6
BcaC04g23820 Brassica carinata HOM05D003991 ORTHO05D004883 4.2e-65 253.8 470 41.3
Sp7g03030 Schrenkiella parvula HOM05D003991 ORTHO05D004883 2.3e-63 248.1 246 55.7
SMO147G0173 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 2.0e-62 245.0 506 36.6
Dinv33867 Davidia involucrata HOM05D003991 ORTHO05D004883 5.4e-60 236.9 211 61.1
Dinv33865 Davidia involucrata HOM05D003991 ORTHO05D004883 1.6e-48 198.7 131 80.2
MD09G1075300 Malus domestica HOM05D003991 ORTHO05D004883 1.4e-44 185.7 121 71.9
BcaC04g23819 Brassica carinata HOM05D003991 ORTHO05D004883 9.2e-44 183.0 793 28.2
HPP92_006579 Vanilla planifolia HOM05D003991 ORTHO05D004883 6.6e-42 176.8 240 46.2
Sc11g0008830 Simmondsia chinensis HOM05D003991 ORTHO05D004883 6.4e-37 160.2 92 79.3
CSS0000762 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 7.0e-36 156.8 87 79.3
CSS0038698 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 7.0e-36 156.8 87 79.3
HPP92_006533 Vanilla planifolia HOM05D003991 ORTHO05D004883 9.2e-36 156.4 360 33.3
SMO147G0397 Selaginella moellendorffii HOM05D003991 ORTHO05D050858 1.5e-30 139.0 142 54.9
HPP92_026595 Vanilla planifolia HOM05D003991 ORTHO05D004883 2.0e-30 138.7 130 60.8
arahy.Tifrunner.gnm1.ann1.Q8CATI Arachis hypogaea HOM05D003991 ORTHO05D004883 1.5e-25 122.5 75 86.7
BcaC04g23821 Brassica carinata HOM05D003991 ORTHO05D004883 2.6e-22 111.7 89 60.7
HPP92_026824 Vanilla planifolia HOM05D003991 ORTHO05D004883 2.9e-21 108.2 107 51.4
Medtr7g008870 Medicago truncatula HOM05D003991 ORTHO05D004883 4.1e-20 104.4 71 69.0
HPP92_026934 Vanilla planifolia HOM05D003881 ORTHO05D004343 3.5e-19 101.3 81 60.5
BcaB04g19526 Brassica carinata HOM05D003991 ORTHO05D004883 3.3e-17 94.7 74 63.5
HPP92_028494 Vanilla planifolia HOM05D003991 ORTHO05D004883 5.6e-17 94.0 135 48.9
HPP92_028205 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.4e-15 89.4 177 36.2
Cfa002005 Carpinus fangiana HOM05D003991 ORTHO05D009743 2.4e-15 88.6 56 82.1
Cfa020174 Carpinus fangiana HOM05D003991 ORTHO05D004883 3.4e-14 84.7 72 62.5
Medtr7g051850 Medicago truncatula HOM05D003991 ORTHO05D004883 2.9e-13 81.6 59 67.8
SEGI_36661 Sequoiadendron giganteum HOM05D001164 ORTHO05D018381 9.3e-12 76.6 77 54.5
Dinv33864 Davidia involucrata HOM05D003991 ORTHO05D004883 7.8e-11 73.6 111 45.0
BcaC04g23826 Brassica carinata HOM05D003991 ORTHO05D004883 6.6e-10 70.5 112 47.3
HPP92_027976 Vanilla planifolia HOM05D003991 ORTHO05D004883 6.2e-08 63.9 85 42.4
QL05p023649 Quercus lobata HOM05D003991 ORTHO05D004883 1.8e-07 62.4 52 69.2
Os11g0189900 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D298446 2.6e-06 58.5 77 45.5
QL01p030546 Quercus lobata HOM05D003991 ORTHO05D004883 4.5e-06 57.8 52 65.4


User provided reference genes

Program Settings