Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G256300 Glycine max HOM05D007678 ORTHO05D009658 6.5e-140 500.7 258 100.0
Glyma.09G240200 Glycine max HOM05D007678 ORTHO05D009658 2.8e-98 362.5 277 76.2
Medtr7g009670 Medicago truncatula HOM05D007678 ORTHO05D009658 1.2e-72 277.3 280 60.7
Lalb_Chr17g0337231 Lupinus albus HOM05D007678 ORTHO05D009658 4.9e-71 271.9 282 60.3
Lj1g0010481 Lotus japonicus HOM05D007678 ORTHO05D009658 1.9e-70 270.0 212 73.1
Psat3g196520 Pisum sativum HOM05D007678 ORTHO05D009658 1.7e-68 263.5 217 69.1
Ca_04109_v3 Cicer arietinum L. HOM05D007678 ORTHO05D009658 8.7e-68 261.2 217 69.1
Ca_04118_v3 Cicer arietinum L. HOM05D007678 ORTHO05D009658 8.7e-68 261.2 217 69.1
arahy.Tifrunner.gnm1.ann1.EB95VJ Arachis hypogaea HOM05D007678 ORTHO05D009658 5.3e-65 251.9 247 61.1
VMungo1383G0210 Vigna mungo HOM05D000430 ORTHO05D009658 8.4e-63 244.6 180 72.8
QL04p021923 Quercus lobata HOM05D007678 ORTHO05D009658 1.0e-60 237.7 271 54.2
Haze_02966 Corylus avellana HOM05D007678 ORTHO05D009658 1.3e-60 237.3 217 63.1
Atru.chr2.1713_Atru.chr2.1714 Acer truncatum HOM05D007678 ORTHO05D009658 3.0e-60 236.1 216 62.0
QL04p022035 Quercus lobata HOM05D007678 ORTHO05D009658 3.3e-59 232.6 213 62.0
Potri.001G033500 Populus trichocarpa HOM05D007678 ORTHO05D009658 3.7e-58 229.2 216 62.5
Prupe.2G048500 Prunus persica HOM05D007678 ORTHO05D009658 8.1e-58 228.0 216 61.1
arahy.Tifrunner.gnm1.ann1.L3S1G4 Arachis hypogaea HOM05D007678 ORTHO05D009658 5.3e-57 225.3 224 60.7
COL.COLO4_04659 Corchorus olitorius HOM05D007678 ORTHO05D009658 1.2e-56 224.2 254 54.3
MD02G1272300 Malus domestica HOM05D007678 ORTHO05D009658 4.5e-56 222.2 216 59.3
Duzib106G1843 Durio zibethinus HOM05D007678 ORTHO05D009658 4.9e-55 218.8 246 55.7
Thecc.10G137600 Theobroma cacao HOM05D007678 ORTHO05D009658 4.9e-55 218.8 214 58.9
Actinidia01693 Actinidia chinensis HOM05D007678 ORTHO05D009658 1.4e-54 217.2 216 58.8
Nn7g37012 Nelumbo nucifera HOM05D007678 ORTHO05D009658 2.5e-54 216.5 277 49.8
Oeu044217.3 Olea europaea HOM05D007678 ORTHO05D009658 2.5e-54 216.5 236 53.8
RcHm_v2.0_Chr1g0328821 Rosa chinensis HOM05D007678 ORTHO05D009658 2.5e-54 216.5 216 58.3
FvH4_7g04260 Fragaria vesca HOM05D007678 ORTHO05D009658 3.2e-54 216.1 216 58.3
FAN10G0661 Fragaria x ananassa HOM05D007678 ORTHO05D009658 5.5e-54 215.3 275 50.9
Sabra01G0023800 Salix brachista HOM05D007678 ORTHO05D009658 5.5e-54 215.3 247 55.1
Dinv31528 Davidia involucrata HOM05D007678 ORTHO05D009658 2.7e-53 213.0 216 57.9
HanXRQChr12g0376111 Helianthus annuus HOM05D007678 ORTHO05D009658 2.7e-53 213.0 238 54.6
TAR623G0324 Trochodendron aralioides HOM05D007678 ORTHO05D009658 3.5e-53 212.6 250 52.0
ECA248G0545 Erigeron canadensis HOM05D007678 ORTHO05D009658 6.0e-53 211.8 215 57.7
Gohir.D10G198600 Gossypium hirsutum HOM05D007678 ORTHO05D009658 1.3e-52 210.7 216 56.5
CiPaw.14G011000 Carya illinoinensis HOM05D007678 ORTHO05D009658 3.9e-52 209.1 197 63.5
TWI38G1059 Tripterygium wilfordii HOM05D007678 ORTHO05D009658 6.7e-52 208.4 216 56.9
Gorai.011G222500 Gossypium raimondii HOM05D007678 ORTHO05D009658 1.1e-51 207.6 216 55.6
Lsat_1_v5_gn_7_114920 Lactuca sativa HOM05D007678 ORTHO05D009658 2.5e-51 206.5 219 56.6
Manes.04G155050 Manihot esculenta HOM05D007678 ORTHO05D009658 3.3e-51 206.1 258 51.2
FAN06G1516 Fragaria x ananassa HOM05D007678 ORTHO05D009658 4.3e-51 205.7 225 55.1
Solyc10g081280.2 Solanum lycopersicum HOM05D007678 ORTHO05D009658 9.6e-51 204.5 216 56.9
Gohir.A10G190900 Gossypium hirsutum HOM05D007678 ORTHO05D009658 2.8e-50 203.0 213 55.4
PGSC0003DMG401028118 Solanum tuberosum HOM05D007678 ORTHO05D009658 2.8e-50 203.0 216 56.0
Sopen10g031780 Solanum pennellii HOM05D007678 ORTHO05D009658 6.3e-50 201.8 216 55.1
CAN.G128.118 Capsicum annuum HOM05D001269 ORTHO05D001083 5.3e-49 198.7 213 55.4
Peaxi162Scf00153g00057 Petunia axillaris HOM05D007678 ORTHO05D009658 9.0e-49 198.0 218 54.1
SalBow6G2419 Salvia bowleyana HOM05D007678 ORTHO05D009658 9.0e-49 198.0 214 53.3
DCAR_001914 Daucus carota HOM05D007678 ORTHO05D009658 4.5e-48 195.7 231 52.4
Sed0019894 Sechium edule HOM05D000001 ORTHO05D000003 5.9e-48 195.3 206 56.8
Nitab4.5_0008005g0010 Nicotiana tabacum HOM05D007678 ORTHO05D009658 1.0e-47 194.5 206 56.3
MELO3C034052.2 Cucumis melo HOM05D007678 ORTHO05D009658 1.7e-47 193.7 223 52.5
Ah.12g064780 Amaranthus hybridus HOM05D007678 ORTHO05D009658 2.9e-47 193.0 229 51.1
Eucgr.G03196 Eucalyptus grandis HOM05D007678 ORTHO05D009658 6.5e-47 191.8 212 54.7
ATR0307G037 Amborella trichopoda HOM05D007678 ORTHO05D009658 8.4e-47 191.4 243 47.7
MBI13_g30074_MAGBIO Magnolia biondii HOM05D007678 ORTHO05D009658 3.2e-46 189.5 272 46.0
unitig_37.g12769 Utricularia gibba HOM05D007678 ORTHO05D009658 5.5e-46 188.7 210 50.5
PGR031G1114 Punica granatum HOM05D007678 ORTHO05D009658 2.1e-45 186.8 212 52.8
Hund13420 Selenicereus undatus HOM05D007678 ORTHO05D009658 7.9e-45 184.9 271 45.0
Sc10g0003150 Simmondsia chinensis HOM05D007678 ORTHO05D009658 1.0e-44 184.5 214 50.9
Migut.J01589 Erythranthe guttata HOM05D007678 ORTHO05D009658 5.1e-44 182.2 216 50.5
EL10Ac2g02701 Beta vulgaris HOM05D007678 ORTHO05D009658 8.7e-44 181.4 204 53.4
Nitab4.5_0000062g0570 Nicotiana tabacum HOM05D007678 ORTHO05D009658 1.1e-43 181.0 214 52.3
Phvul.008G043200 Phaseolus vulgaris HOM05D007678 ORTHO05D009658 4.3e-43 179.1 176 63.1
vmacro20847 Vaccinium macrocarpon HOM05D007678 ORTHO05D009658 4.8e-42 175.6 240 49.6
AUR62031676 Chenopodium quinoa HOM05D007678 ORTHO05D009658 1.1e-41 174.5 189 54.0
Rhsim01G0121700 Rhododendron simsii HOM05D007678 ORTHO05D009658 3.1e-41 172.9 178 56.2
HPP92_018248 Vanilla planifolia HOM05D007678 ORTHO05D009658 9.0e-41 171.4 204 48.5
Zm00001eb303400 Zea mays HOM05D007678 ORTHO05D009658 1.1e-38 164.5 208 48.6
CDE09G0612 Ceratophyllum demersum HOM05D007678 ORTHO05D009658 1.4e-38 164.1 179 54.7
CsaV3_5G029470 Cucumis sativus L. HOM05D007678 ORTHO05D000003 1.4e-36 157.5 187 51.9
CANSAT56G0191 Cannabis sativa HOM05D007678 ORTHO05D009658 1.1e-35 154.5 130 62.3
QL04p021970 Quercus lobata HOM05D007678 ORTHO05D009658 6.9e-33 145.2 132 62.9
TPR.G4277 Trifolium pratense HOM05D007678 ORTHO05D009658 5.9e-32 142.1 156 57.7
SMO174G0167 Selaginella moellendorffii HOM05D007678 ORTHO05D009658 3.8e-31 139.4 206 39.8
Mapoly0003s0067 Marchantia polymorpha HOM05D007678 ORTHO05D009658 5.0e-31 139.0 207 38.6
TPR.G8973 Trifolium pratense HOM05D007678 ORTHO05D009658 1.1e-30 137.9 107 68.2
Pp3c18_7980 Physcomitrium patens HOM05D007678 ORTHO05D009658 5.5e-30 135.6 212 37.3
arahy.Tifrunner.gnm1.ann1.1DGF2A Arachis hypogaea HOM05D007678 ORTHO05D009658 2.7e-29 133.3 105 64.8
CBR_g30334 Chara braunii HOM05D007678 ORTHO05D009658 3.0e-28 129.8 214 38.3
arahy.Tifrunner.gnm1.ann1.6E2HM0 Arachis hypogaea HOM05D007678 ORTHO05D009658 2.6e-27 126.7 108 63.0
Cpa.g.sc33.162 Carica papaya HOM05D007678 ORTHO05D009658 2.8e-26 123.2 106 67.9
Cc06_g20600 Coffea canephora HOM05D007678 ORTHO05D009658 1.0e-23 114.8 125 54.4
Lsat_1_v5_gn_5_155661 Lactuca sativa HOM05D007678 ORTHO05D009658 8.5e-23 111.7 215 38.6
arahy.Tifrunner.gnm1.ann1.78M82M Arachis hypogaea HOM05D007678 ORTHO05D009658 8.0e-21 105.1 93 59.1
Cc06_g20610 Coffea canephora HOM05D007678 ORTHO05D009658 6.3e-18 95.5 102 48.0
CSS0047660 Camellia sinensis var. sinensis HOM05D007678 ORTHO05D009658 3.8e-15 86.3 63 69.8
MCO01G505 Micromonas commoda HOM05D007678 ORTHO05D009658 9.4e-14 81.6 194 26.3
QL04p021975 Quercus lobata HOM05D007678 ORTHO05D009658 2.7e-13 80.1 58 69.0
PRCOL_00006709 Prasinoderma coloniale HOM05D007678 ORTHO05D009658 3.6e-13 79.7 193 28.0
GSVIVG01012452001 Vitis vinifera HOM05D007678 ORTHO05D009658 3.4e-11 73.2 86 50.0
arahy.Tifrunner.gnm1.ann1.Q44M57 Arachis hypogaea HOM05D006052 ORTHO05D007319 4.8e-10 69.3 64 60.9
arahy.Tifrunner.gnm1.ann1.MMNX5U Arachis hypogaea HOM05D000747 ORTHO05D009658 1.1e-09 68.2 54 70.4


User provided reference genes

Program Settings