Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G246700 Glycine max HOM05D001772 ORTHO05D000476 5.0e-114 414.5 210 100.0
Glyma.09G246300 Glycine max HOM05D001772 ORTHO05D000476 1.6e-88 329.7 211 83.4
Phvul.008G050400 Phaseolus vulgaris HOM05D001772 ORTHO05D000476 3.2e-76 288.9 213 72.8
VMungo1383G2637 Vigna mungo HOM05D001772 ORTHO05D000476 1.5e-70 270.0 214 67.8
Lalb_Chr03g0040551 Lupinus albus HOM05D001772 ORTHO05D000476 1.5e-65 253.4 238 63.4
Lj1g0002706 Lotus japonicus HOM05D001772 ORTHO05D000476 5.6e-65 251.5 216 64.8
arahy.Tifrunner.gnm1.ann1.6LLT9T Arachis hypogaea HOM05D001772 ORTHO05D000476 2.9e-61 239.2 235 60.9
arahy.Tifrunner.gnm1.ann1.Z5E7XJ Arachis hypogaea HOM05D001772 ORTHO05D000476 2.9e-61 239.2 235 60.9
Psat3g100920 Pisum sativum HOM05D001772 ORTHO05D000476 1.0e-58 230.7 211 63.5
TPR.G35837 Trifolium pratense HOM05D001772 ORTHO05D000476 1.9e-57 226.5 222 62.6
Ca_08035_v3 Cicer arietinum L. HOM05D001772 ORTHO05D000476 2.8e-56 222.6 217 62.7
Medtr7g080890 Medicago truncatula HOM05D001772 ORTHO05D000476 1.1e-55 220.7 217 62.2
QL09p045418 Quercus lobata HOM05D001772 ORTHO05D000476 6.0e-51 204.9 220 59.1
Cfa010573 Carpinus fangiana HOM05D001772 ORTHO05D000476 1.0e-50 204.1 221 58.4
CiPaw.14G044200 Carya illinoinensis HOM05D001772 ORTHO05D000476 1.3e-50 203.8 224 56.2
Haze_03506 Corylus avellana HOM05D001772 ORTHO05D000476 1.7e-50 203.4 219 58.0
Ciclev10016082m.g Citrus clementina HOM05D001772 ORTHO05D000476 2.5e-49 199.5 216 56.0
Potri.002G239800 Populus trichocarpa HOM05D001772 ORTHO05D000476 2.1e-48 196.4 217 56.7
CiPaw.13G055700 Carya illinoinensis HOM05D001772 ORTHO05D000476 2.8e-48 196.1 227 54.6
Cpa.g.sc8.39 Carica papaya HOM05D001772 ORTHO05D000476 1.8e-47 193.4 223 54.7
Sabra02G0182600 Salix brachista HOM05D001772 ORTHO05D000476 1.8e-47 193.4 214 57.0
COL.COLO4_34275 Corchorus olitorius HOM05D001772 ORTHO05D000476 3.1e-47 192.6 221 52.5
Duzib133G1118 Durio zibethinus HOM05D001772 ORTHO05D000476 4.0e-47 192.2 239 49.8
Gohir.A08G048200 Gossypium hirsutum HOM05D001772 ORTHO05D000476 2.6e-46 189.5 217 51.2
CANSAT01G0681 Cannabis sativa HOM05D001772 ORTHO05D000476 5.8e-46 188.3 216 52.8
Thecc.01G207500 Theobroma cacao HOM05D001772 ORTHO05D000476 7.6e-46 188.0 207 50.7
Dinv28791 Davidia involucrata HOM05D001772 ORTHO05D000476 5.4e-44 181.8 259 46.3
Gohir.D08G058300 Gossypium hirsutum HOM05D001772 ORTHO05D000476 5.4e-44 181.8 213 49.8
Manes.12G055400 Manihot esculenta HOM05D001772 ORTHO05D000476 5.4e-44 181.8 218 51.8
Gorai.004G060200 Gossypium raimondii HOM05D001772 ORTHO05D000476 9.3e-44 181.0 213 49.3
vmacro14687 Vaccinium macrocarpon HOM05D001772 ORTHO05D000476 2.1e-43 179.9 192 55.7
Dinv35446 Davidia involucrata HOM05D001772 ORTHO05D000476 2.7e-43 179.5 256 46.5
MELO3C021127.2 Cucumis melo HOM05D001772 ORTHO05D000476 1.3e-42 177.2 238 50.8
Prupe.8G187000 Prunus persica HOM05D001772 ORTHO05D000476 3.0e-42 176.0 237 50.2
Sed0023396 Sechium edule HOM05D001772 ORTHO05D000476 3.0e-42 176.0 225 50.2
Eucgr.K02359 Eucalyptus grandis HOM05D001772 ORTHO05D000476 6.7e-42 174.9 219 49.3
GSVIVG01001530001 Vitis vinifera HOM05D001772 ORTHO05D000476 6.7e-42 174.9 143 64.3
Actinidia23345 Actinidia chinensis HOM05D001772 ORTHO05D000476 1.1e-41 174.1 236 47.5
FvH4_2g17470 Fragaria vesca HOM05D001772 ORTHO05D000476 1.5e-41 173.7 213 47.4
TWI36G1769 Tripterygium wilfordii HOM05D001772 ORTHO05D000476 2.5e-41 172.9 187 55.6
Nn7g37462 Nelumbo nucifera HOM05D001772 ORTHO05D000476 4.3e-41 172.2 162 58.0
PSO170G5618 Papaver somniferum HOM05D001772 ORTHO05D000476 4.3e-41 172.2 235 51.5
RcHm_v2.0_Chr6g0282201 Rosa chinensis HOM05D001772 ORTHO05D000476 4.3e-41 172.2 216 48.6
Lj2C1111T5 Lonicera japonica HOM05D001772 ORTHO05D000476 1.3e-40 170.6 204 49.5
PSO357G0631 Papaver somniferum HOM05D001772 ORTHO05D000476 1.3e-40 170.6 235 50.6
Lsat_1_v5_gn_9_16941 Lactuca sativa HOM05D001772 ORTHO05D000476 1.6e-40 170.2 214 48.1
HanXRQChr07g0190571 Helianthus annuus HOM05D001772 ORTHO05D000476 2.1e-40 169.9 212 48.6
MD10G1147900 Malus domestica HOM05D001772 ORTHO05D000476 2.1e-40 169.9 233 48.5
Hund02807 Selenicereus undatus HOM05D001772 ORTHO05D000476 2.1e-40 169.9 214 47.2
SGA_v2.0_scaffold8G04491 Striga asiatica HOM05D001772 ORTHO05D000476 2.1e-40 169.9 201 51.7
ClCG09G008340 Citrullus lanatus HOM05D001772 ORTHO05D002266 2.8e-40 169.5 212 51.4
AUR62008067 Chenopodium quinoa HOM05D001772 ORTHO05D000476 8.1e-40 167.9 212 49.5
Nitab4.5_0000038g0390 Nicotiana tabacum HOM05D001772 ORTHO05D000476 1.4e-39 167.2 157 58.0
Cc01_g15860 Coffea canephora HOM05D001772 ORTHO05D000476 1.8e-39 166.8 145 57.9
Oeu020366.1 Olea europaea HOM05D001772 ORTHO05D000476 3.1e-39 166.0 164 54.9
TAR362G0313 Trochodendron aralioides HOM05D001772 ORTHO05D000476 3.1e-39 166.0 199 51.8
HPP92_003443 Vanilla planifolia HOM05D001772 ORTHO05D000476 4.0e-39 165.6 151 55.6
PGR044G1970 Punica granatum HOM05D001772 ORTHO05D000476 6.9e-39 164.9 224 48.2
PGSC0003DMG400021910 Solanum tuberosum HOM05D001772 ORTHO05D000476 6.9e-39 164.9 121 65.3
Aqoxy5G00066 Aquilegia oxysepala HOM05D001772 ORTHO05D000476 1.2e-38 164.1 142 57.0
EL10Ac5g10585 Beta vulgaris HOM05D001772 ORTHO05D000476 1.2e-38 164.1 215 47.9
Os01g0889800 Oryza sativa ssp. japonica HOM05D001772 ORTHO05D000476 1.5e-38 163.7 135 63.0
CAN.G311.18 Capsicum annuum HOM05D001772 ORTHO05D000476 2.0e-38 163.3 215 46.5
Solyc09g042770.4 Solanum lycopersicum HOM05D001772 ORTHO05D000476 2.0e-38 163.3 175 52.6
unitig_62.g23942 Utricularia gibba HOM05D001772 ORTHO05D000476 2.0e-38 163.3 135 57.8
CsaV3_7G026740 Cucumis sativus L. HOM05D000439 ORTHO05D001363 2.6e-38 162.9 238 47.9
MBI10_g28842_MAGBIO Magnolia biondii HOM05D001772 ORTHO05D000476 2.6e-38 162.9 149 57.0
AUR62028644 Chenopodium quinoa HOM05D001772 ORTHO05D000476 3.4e-38 162.5 214 47.7
SalBow3G3719 Salvia bowleyana HOM05D001772 ORTHO05D000476 3.4e-38 162.5 226 46.5
Sopen09g015820 Solanum pennellii HOM05D001772 ORTHO05D000476 5.8e-38 161.8 142 57.0
Migut.D00773 Erythranthe guttata HOM05D001772 ORTHO05D000476 7.6e-38 161.4 172 50.6
BolC3t17745H Brassica oleracea HOM05D001772 ORTHO05D000476 7.1e-36 154.8 182 48.4
Carub.0003s2580 Capsella rubella HOM05D001772 ORTHO05D000476 7.1e-36 154.8 175 52.6
CARHR101780 Cardamine hirsuta HOM05D001772 ORTHO05D000476 7.1e-36 154.8 182 51.1
THA.LOC104808817 Tarenaya hassleriana HOM05D001772 ORTHO05D000476 9.3e-36 154.5 155 54.2
Sp3g23000 Schrenkiella parvula HOM05D001772 ORTHO05D000476 1.6e-35 153.7 163 52.1
AL3G41600 Arabidopsis lyrata HOM05D001772 ORTHO05D000476 2.7e-35 152.9 214 46.7
AT3G25480 Arabidopsis thaliana HOM05D001772 ORTHO05D000476 2.7e-35 152.9 176 51.7
BcaC01g03224 Brassica carinata HOM05D001772 ORTHO05D000476 4.6e-35 152.1 182 47.8
C03p54580 Brassica napus HOM05D001772 ORTHO05D000476 4.6e-35 152.1 182 47.8
Thhalv10002639m.g Eutrema salsugineum HOM05D001772 ORTHO05D000476 6.0e-35 151.8 185 49.2
Nitab4.5_0008926g0020 Nicotiana tabacum HOM05D001772 ORTHO05D000476 1.0e-34 151.0 220 47.3
Zm00001eb365870 Zea mays HOM05D001772 ORTHO05D000476 1.3e-34 150.6 136 61.0
BcaB08g34454 Brassica carinata HOM05D001772 ORTHO05D000476 2.3e-34 149.8 184 47.3
A03p44200 Brassica napus HOM05D001772 ORTHO05D000476 3.0e-34 149.4 182 46.2
Peaxi162Scf02239g00025 Petunia axillaris HOM05D001772 ORTHO05D000476 3.0e-34 149.4 105 71.4
BraA03t13549Z Brassica rapa HOM05D001772 ORTHO05D000476 5.1e-34 148.7 182 46.2
ATR0743G233 Amborella trichopoda HOM05D001772 ORTHO05D000476 1.9e-33 146.7 195 46.7
RcHm_v2.0_Chr3g0456441 Rosa chinensis HOM05D001772 ORTHO05D000476 1.9e-33 146.7 217 44.7
Sc17g0001580 Simmondsia chinensis HOM05D001772 ORTHO05D000476 2.5e-33 146.4 167 47.3
CDE09G0012 Ceratophyllum demersum HOM05D001772 ORTHO05D000476 7.4e-33 144.8 123 56.9
CDE02G4114 Ceratophyllum demersum HOM05D001772 ORTHO05D000476 1.4e-31 140.6 123 54.5
Rhsim01G0247500 Rhododendron simsii HOM05D001772 ORTHO05D000476 4.1e-31 139.0 105 67.6
FAN27G2958 Fragaria x ananassa HOM05D004953 ORTHO05D006193 1.0e-29 134.4 110 56.4
Sed0027176 Sechium edule HOM05D001772 ORTHO05D000476 4.6e-27 125.6 128 57.0
ECA247G0275 Erigeron canadensis HOM05D001772 ORTHO05D000476 8.7e-26 121.3 99 58.6
Actinidia29996 Actinidia chinensis HOM05D001772 ORTHO05D000476 2.5e-25 119.8 178 48.9
MD05G1153600 Malus domestica HOM05D001772 ORTHO05D000476 6.9e-23 111.7 95 62.1
RcHm_v2.0_Chr6g0284601 Rosa chinensis HOM05D001772 ORTHO05D000476 1.3e-21 107.5 153 42.5
Actinidia04690 Actinidia chinensis HOM05D004953 ORTHO05D006193 6.1e-19 98.6 80 60.0
Aa31LG9G5680 Aethionema arabicum HOM05D001772 ORTHO05D000476 2.4e-15 86.7 154 36.4
Pp3c20_13120 Physcomitrium patens HOM05D001772 ORTHO05D005958 1.8e-07 60.5 78 42.3
Gohir.A12G111400 Gossypium hirsutum HOM05D001772 ORTHO05D005958 2.4e-07 60.1 123 35.8
Gohir.D12G114700 Gossypium hirsutum HOM05D001772 ORTHO05D005958 2.4e-07 60.1 123 35.8
Gorai.008G124200 Gossypium raimondii HOM05D001772 ORTHO05D005958 2.4e-07 60.1 123 35.8
Pp3c10_10490 Physcomitrium patens HOM05D001772 ORTHO05D005958 3.1e-07 59.7 78 44.9
CiPaw.01G074300 Carya illinoinensis HOM05D001772 ORTHO05D005958 4.1e-07 59.3 132 32.6
SMO111G0042 Selaginella moellendorffii HOM05D001772 ORTHO05D005958 4.1e-07 59.3 122 35.2
Carub.0006s3611 Capsella rubella HOM05D001772 ORTHO05D005958 5.3e-07 58.9 205 28.3
ClCG05G000930 Citrullus lanatus HOM05D001772 ORTHO05D005958 5.3e-07 58.9 133 32.3
Mapoly0027s0106 Marchantia polymorpha HOM05D001772 ORTHO05D005958 7.0e-07 58.5 78 43.6
Psat4g160440 Pisum sativum HOM05D001772 ORTHO05D005958 7.0e-07 58.5 135 32.6
FAN03G0169 Fragaria x ananassa HOM05D001772 ORTHO05D008903 9.1e-07 58.2 135 31.1
Pp3c14_24370 Physcomitrium patens HOM05D001772 ORTHO05D005958 1.2e-06 57.8 78 47.4
FAN10G1004 Fragaria x ananassa HOM05D001772 ORTHO05D005958 1.5e-06 57.4 135 30.4
FAN10G2954 Fragaria x ananassa HOM05D001772 ORTHO05D008903 1.5e-06 57.4 135 30.4
Aqoxy7G00134 Aquilegia oxysepala HOM05D001772 ORTHO05D005958 2.0e-06 57.0 126 33.3
FAN01G1646 Fragaria x ananassa HOM05D001772 ORTHO05D008903 2.0e-06 57.0 135 30.4
Glyma.16G026200 Glycine max HOM05D001772 ORTHO05D005958 2.0e-06 57.0 127 30.7
HanXRQChr11g0353041 Helianthus annuus HOM05D001772 ORTHO05D005958 2.0e-06 57.0 191 30.4
Duzib138G1424 Durio zibethinus HOM05D001772 ORTHO05D005958 2.6e-06 56.6 118 33.9
FvH4_7g16190 Fragaria vesca HOM05D001772 ORTHO05D005958 2.6e-06 56.6 135 30.4
Manes.01G247500 Manihot esculenta HOM05D001772 ORTHO05D005958 2.6e-06 56.6 209 27.8
Phvul.010G112100 Phaseolus vulgaris HOM05D001772 ORTHO05D005958 2.6e-06 56.6 127 30.7
TPR.G7664 Trifolium pratense HOM05D001772 ORTHO05D005958 2.6e-06 56.6 131 31.3
HPP92_008635 Vanilla planifolia HOM05D001772 ORTHO05D005958 2.6e-06 56.6 101 34.7
BraA09t35751Z Brassica rapa HOM05D001772 ORTHO05D005958 3.5e-06 56.2 206 28.6
Cfa003819 Carpinus fangiana HOM05D001772 ORTHO05D008903 3.5e-06 56.2 127 33.1
FAN06G2365 Fragaria x ananassa HOM05D001772 ORTHO05D008903 3.5e-06 56.2 135 30.4
Medtr8g027835 Medicago truncatula HOM05D001772 ORTHO05D005958 3.5e-06 56.2 131 32.1
Sc23g0002200 Simmondsia chinensis HOM05D001772 ORTHO05D005958 3.5e-06 56.2 171 29.8
ATR0589G056 Amborella trichopoda HOM05D001772 ORTHO05D005958 4.5e-06 55.8 224 29.0
AUR62023482 Chenopodium quinoa HOM05D001772 ORTHO05D005958 4.5e-06 55.8 107 32.7
Ah.05g179770 Amaranthus hybridus HOM05D001772 ORTHO05D005958 5.9e-06 55.5 132 30.3
BcaC04g24115 Brassica carinata HOM05D001772 ORTHO05D005958 5.9e-06 55.5 206 27.2
Cc02_g39150 Coffea canephora HOM05D001772 ORTHO05D005958 5.9e-06 55.5 134 30.6
BcaC01g06840 Brassica carinata HOM05D001772 ORTHO05D005958 7.7e-06 55.1 202 28.7
BcaC04g24121 Brassica carinata HOM05D001772 ORTHO05D005958 7.7e-06 55.1 206 27.7
C09p00870 Brassica napus HOM05D001772 ORTHO05D005958 7.7e-06 55.1 115 34.8
BolC3t16157H Brassica oleracea HOM05D001772 ORTHO05D008903 7.7e-06 55.1 202 28.7
CANSAT56G1036 Cannabis sativa HOM05D001772 ORTHO05D008903 7.7e-06 55.1 119 36.1
Ca_26358_v3 Cicer arietinum L. HOM05D001772 ORTHO05D005958 7.7e-06 55.1 125 30.4
Zm00001eb238170 Zea mays HOM05D001772 ORTHO05D005958 7.7e-06 55.1 139 32.4


User provided reference genes

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