Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G244800 Glycine max HOM05D005855 ORTHO05D006406 0.0e+00 1533.1 849 100.0
Glyma.09G248000 Glycine max HOM05D005855 ORTHO05D006406 0.0e+00 1339.7 851 86.6
Phvul.008G051800 Phaseolus vulgaris HOM05D005855 ORTHO05D006406 0.0e+00 1149.8 852 75.0
VMungo1383G1707 Vigna mungo HOM05D005855 ORTHO05D006406 1.2e-302 1043.1 859 69.0
Ca_08015_v3 Cicer arietinum L. HOM05D005855 ORTHO05D006406 2.7e-299 1031.9 847 68.5
Lj1g0024601 Lotus japonicus HOM05D005855 ORTHO05D006406 2.3e-298 1028.9 841 69.2
TPR.G31229 Trifolium pratense HOM05D005855 ORTHO05D006406 2.7e-283 978.8 872 65.8
Lalb_Chr03g0038151 Lupinus albus HOM05D005855 ORTHO05D006406 1.2e-270 936.8 857 63.5
Psat3g103080 Pisum sativum HOM05D005855 ORTHO05D006406 9.9e-270 933.7 879 62.6
Medtr7g080500 Medicago truncatula HOM05D005855 ORTHO05D006406 9.3e-268 927.2 832 65.1
arahy.Tifrunner.gnm1.ann1.VEFL47 Arachis hypogaea HOM05D005855 ORTHO05D006406 4.0e-255 885.2 853 61.4
Lalb_Chr21g0311491 Lupinus albus HOM05D005855 ORTHO05D006406 1.3e-232 810.4 774 61.0
Prupe.6G365000 Prunus persica HOM05D005855 ORTHO05D006406 3.2e-204 716.1 820 54.3
Dinv17130 Davidia involucrata HOM05D005855 ORTHO05D006406 8.6e-197 691.4 824 51.8
MD12G1261700 Malus domestica HOM05D005855 ORTHO05D006406 8.6e-197 691.4 833 52.2
QL01p051691 Quercus lobata HOM05D005855 ORTHO05D006406 1.5e-196 690.6 817 50.9
QL01p051722 Quercus lobata HOM05D005855 ORTHO05D006406 7.2e-196 688.3 817 50.8
FvH4_6g00081 Fragaria vesca HOM05D005855 ORTHO05D006406 4.0e-194 682.6 833 51.6
RcHm_v2.0_Chr3g0447421 Rosa chinensis HOM05D005855 ORTHO05D006406 5.2e-194 682.2 818 52.0
FAN14G2818 Fragaria x ananassa HOM05D005855 ORTHO05D006406 1.5e-193 680.6 833 51.5
FAN02G1917 Fragaria x ananassa HOM05D005855 ORTHO05D006406 9.2e-191 671.4 833 51.1
MELO3C008612.2 Cucumis melo HOM05D005855 ORTHO05D006406 1.6e-190 670.6 812 51.7
Potri.008G077800 Populus trichocarpa HOM05D005855 ORTHO05D006406 6.6e-189 665.2 829 50.2
CsaV3_2G010280 Cucumis sativus L. HOM05D005855 ORTHO05D006406 1.8e-186 657.1 840 49.6
Haze_04608 Corylus avellana HOM05D005855 ORTHO05D006406 1.5e-185 654.1 896 48.1
Rhsim04G0133000 Rhododendron simsii HOM05D005855 ORTHO05D006406 1.3e-184 651.0 830 49.8
Actinidia19643 Actinidia chinensis HOM05D005855 ORTHO05D006406 1.7e-184 650.6 836 49.6
TAR633G1091 Trochodendron aralioides HOM05D005855 ORTHO05D006406 3.7e-184 649.4 842 49.5
Sabra08G0057900 Salix brachista HOM05D005855 ORTHO05D006406 1.9e-183 647.1 827 50.2
CiPaw.08G111900 Carya illinoinensis HOM05D005855 ORTHO05D006406 1.2e-182 644.4 818 50.0
vmacro08871 Vaccinium macrocarpon HOM05D005855 ORTHO05D006406 2.0e-182 643.7 899 47.5
Sed0023015 Sechium edule HOM05D005855 ORTHO05D006406 2.7e-182 643.3 842 49.9
Manes.13G000700 Manihot esculenta HOM05D005855 ORTHO05D006406 3.5e-182 642.9 853 48.9
FAN09G4305 Fragaria x ananassa HOM05D005855 ORTHO05D006406 3.0e-181 639.8 856 49.3
CANSAT64G2413 Cannabis sativa HOM05D005855 ORTHO05D006406 3.9e-181 639.4 824 50.7
Ciclev10000302m.g Citrus clementina HOM05D005855 ORTHO05D006406 4.3e-180 636.0 818 49.8
Atru.chr2.218 Acer truncatum HOM05D005855 ORTHO05D006406 7.3e-180 635.2 837 49.5
PGR031G3878 Punica granatum HOM05D005855 ORTHO05D006406 1.2e-177 627.9 806 49.3
MD00G1017400 Malus domestica HOM05D005855 ORTHO05D006406 1.5e-177 627.5 833 48.9
ClCG11G010010 Citrullus lanatus HOM05D005855 ORTHO05D006406 5.8e-177 625.5 812 49.6
Gohir.A02G107108 Gossypium hirsutum HOM05D005855 ORTHO05D006406 7.5e-177 625.2 842 48.8
Gohir.A13G090000 Gossypium hirsutum HOM05D005855 ORTHO05D006406 1.4e-175 620.9 838 48.3
COL.COLO4_22931 Corchorus olitorius HOM05D005855 ORTHO05D006406 4.6e-174 615.9 818 49.3
THA.LOC104805689 Tarenaya hassleriana HOM05D005855 ORTHO05D006406 1.7e-173 614.0 814 48.9
Thhalv10018127m.g Eutrema salsugineum HOM05D005855 ORTHO05D006406 5.6e-172 609.0 810 49.3
Gorai.002G148000 Gossypium raimondii HOM05D005855 ORTHO05D006406 3.6e-171 606.3 838 47.5
THA.LOC104822010 Tarenaya hassleriana HOM05D005855 ORTHO05D006406 6.2e-171 605.5 792 49.2
TWI18G0231 Tripterygium wilfordii HOM05D005855 ORTHO05D006406 1.8e-170 604.0 830 46.7
Lj8C197T11 Lonicera japonica HOM05D005855 ORTHO05D006406 6.8e-170 602.1 837 48.1
Gohir.D03G072500 Gossypium hirsutum HOM05D005855 ORTHO05D006406 8.9e-170 601.7 822 48.5
Aa31LG2G2480 Aethionema arabicum HOM05D005855 ORTHO05D006406 1.2e-169 601.3 824 47.9
Sp5g20320 Schrenkiella parvula HOM05D005855 ORTHO05D006406 1.5e-169 600.9 797 49.9
Gorai.003G087300 Gossypium raimondii HOM05D005855 ORTHO05D006406 5.8e-169 599.0 822 48.4
TAR362G1086 Trochodendron aralioides HOM05D005855 ORTHO05D006406 4.1e-167 592.8 805 47.8
Duzib177G0112 Durio zibethinus HOM05D005855 ORTHO05D006406 3.5e-166 589.7 857 48.0
AUR62000270 Chenopodium quinoa HOM05D005855 ORTHO05D006406 1.7e-165 587.4 868 45.2
arahy.Tifrunner.gnm1.ann1.65FHJK Arachis hypogaea HOM05D005855 ORTHO05D006406 6.6e-165 585.5 494 66.8
Sopen11g004450 Solanum pennellii HOM05D005855 ORTHO05D006406 2.5e-164 583.6 823 48.5
PGSC0003DMG400016248 Solanum tuberosum HOM05D005855 ORTHO05D006406 2.5e-164 583.6 832 47.6
Ah.04g159310 Amaranthus hybridus HOM05D005855 ORTHO05D006406 5.6e-164 582.4 825 46.3
DCAR_031596 Daucus carota HOM05D005855 ORTHO05D006406 1.1e-162 578.2 839 45.8
Aqoxy2G04154 Aquilegia oxysepala HOM05D005855 ORTHO05D006406 5.2e-162 575.9 813 45.6
Solyc11g008670.2 Solanum lycopersicum HOM05D005855 ORTHO05D006406 5.2e-162 575.9 830 47.8
Hund21931 Selenicereus undatus HOM05D005855 ORTHO05D006406 1.2e-161 574.7 815 46.6
CARHR057120 Cardamine hirsuta HOM05D005855 ORTHO05D006406 4.4e-161 572.8 804 47.5
Gohir.D13G093500 Gossypium hirsutum HOM05D005855 ORTHO05D006406 4.9e-160 569.3 839 46.4
Peaxi162Scf00254g00712 Petunia axillaris HOM05D005855 ORTHO05D006406 2.4e-159 567.0 840 46.2
AT1G65470 Arabidopsis thaliana HOM05D005855 ORTHO05D006406 3.2e-159 566.6 817 47.1
Nitab4.5_0001003g0160 Nicotiana tabacum HOM05D005855 ORTHO05D006406 7.8e-158 562.0 859 44.5
Nitab4.5_0003928g0050 Nicotiana tabacum HOM05D005855 ORTHO05D006406 1.7e-157 560.8 857 45.3
AL2G22160 Arabidopsis lyrata HOM05D005855 ORTHO05D006406 3.0e-157 560.1 819 47.1
ECA232G0592 Erigeron canadensis HOM05D005855 ORTHO05D006406 3.0e-157 560.1 826 45.8
Thecc.05G112200 Theobroma cacao HOM05D005855 ORTHO05D006406 3.0e-157 560.1 798 46.9
MSTRG.8191 Avicennia marina HOM05D005855 ORTHO05D006406 1.5e-156 557.8 818 45.5
Cc09_g04110 Coffea canephora HOM05D005855 ORTHO05D006406 6.2e-155 552.4 854 45.3
AUR62006618 Chenopodium quinoa HOM05D005855 ORTHO05D006406 2.4e-154 550.4 818 43.6
Migut.F01842 Erythranthe guttata HOM05D005855 ORTHO05D006406 5.3e-154 549.3 821 44.7
Eucgr.B01457 Eucalyptus grandis HOM05D005855 ORTHO05D006406 9.0e-154 548.5 679 51.7
Carub.0002s1120 Capsella rubella HOM05D005855 ORTHO05D006406 2.0e-153 547.4 828 45.8
Potri.002G209795 Populus trichocarpa HOM05D005855 ORTHO05D006406 3.4e-153 546.6 694 49.6
MBI07_g11487_MAGBIO Magnolia biondii HOM05D005855 ORTHO05D006406 1.4e-151 541.2 850 44.5
Sc16g0010640 Simmondsia chinensis HOM05D005855 ORTHO05D006406 9.3e-151 538.5 759 45.7
CAN.G321.5 Capsicum annuum HOM05D005855 ORTHO05D006406 7.8e-150 535.4 813 45.6
EL10Ac4g10026 Beta vulgaris HOM05D005855 ORTHO05D006406 1.3e-149 534.6 827 44.6
TWI36G1346 Tripterygium wilfordii HOM05D000941 ORTHO05D006406 3.0e-149 533.5 780 45.0
SGA_v2.0_scaffold340G49313 Striga asiatica HOM05D005855 ORTHO05D006406 7.3e-148 528.9 823 44.0
SGA_v2.0_scaffold122G33208 Striga asiatica HOM05D005855 ORTHO05D006406 1.6e-147 527.7 837 44.6
C06p39070 Brassica napus HOM05D005855 ORTHO05D006406 6.2e-147 525.8 810 43.8
BolC6t38999H Brassica oleracea HOM05D005855 ORTHO05D006406 8.1e-147 525.4 810 44.0
A07p32840 Brassica napus HOM05D005855 ORTHO05D006406 9.0e-146 521.9 818 43.6
QL01p051710 Quercus lobata HOM05D005855 ORTHO05D006406 1.5e-145 521.2 531 55.4
Actinidia07922 Actinidia chinensis HOM05D005855 ORTHO05D006406 2.6e-145 520.4 702 48.0
BraA07t30911Z Brassica rapa HOM05D005855 ORTHO05D006406 4.5e-145 519.6 818 43.6
Oeu034710.1 Olea europaea HOM05D005855 ORTHO05D006406 5.4e-143 512.7 810 43.7
Lsat_1_v5_gn_0_14480 Lactuca sativa HOM05D005855 ORTHO05D006406 1.1e-140 505.0 820 42.4
HanXRQChr16g0511741 Helianthus annuus HOM05D005855 ORTHO05D006406 2.0e-137 494.2 820 42.8
PSO573G0046 Papaver somniferum HOM05D005855 ORTHO05D006406 3.8e-136 490.0 791 44.0
PSO017G4019 Papaver somniferum HOM05D005855 ORTHO05D006406 6.5e-136 489.2 793 43.8
Actinidia31264 Actinidia chinensis HOM05D005855 ORTHO05D006406 4.5e-129 466.5 829 40.8
unitig_749.g13497 Utricularia gibba HOM05D005855 ORTHO05D006406 6.7e-125 452.6 816 41.2
Os01g0896300 Oryza sativa ssp. japonica HOM05D005855 ORTHO05D006406 9.0e-122 442.2 833 40.0
Zm00001eb365740 Zea mays HOM05D005855 ORTHO05D006406 9.1e-114 415.6 853 38.8
Oeu001220.3 Olea europaea HOM05D005855 ORTHO05D006406 3.4e-113 413.7 715 42.0
Zm00001eb144810 Zea mays HOM05D005855 ORTHO05D006406 1.3e-112 411.8 888 36.8
ATR0743G043 Amborella trichopoda HOM05D005855 ORTHO05D006406 5.5e-111 406.4 872 36.4
HPP92_024393 Vanilla planifolia HOM05D005855 ORTHO05D006406 3.8e-104 383.6 818 39.5
CDE04G3007 Ceratophyllum demersum HOM05D005855 ORTHO05D006406 5.3e-98 363.2 776 36.3
arahy.Tifrunner.gnm1.ann1.8C47BX Arachis hypogaea HOM05D005855 ORTHO05D006406 3.5e-97 360.5 498 47.6
arahy.Tifrunner.gnm1.ann1.F2WWIZ Arachis hypogaea HOM05D005855 ORTHO05D006406 1.5e-95 355.1 498 47.4
SEGI_12971 Sequoiadendron giganteum HOM05D005855 ORTHO05D006406 5.4e-90 336.7 863 33.1
Zm00001eb304780 Zea mays HOM05D005855 ORTHO05D006406 2.9e-88 330.9 786 33.5
CDE02G2532 Ceratophyllum demersum HOM05D005855 ORTHO05D006406 1.8e-74 285.0 592 37.3
GSVIVG01007185001 Vitis vinifera HOM05D005855 ORTHO05D006406 2.6e-68 264.6 234 61.1
arahy.Tifrunner.gnm1.ann1.X0XBNQ Arachis hypogaea HOM05D005855 ORTHO05D006406 3.9e-64 250.8 194 70.1
Cpa.g.sc88.1 Carica papaya HOM05D005855 ORTHO05D006406 4.7e-62 243.8 563 35.5
VMungo1383G0582 Vigna mungo HOM05D005855 ORTHO05D000818 8.9e-61 239.6 243 55.1
Os07g0273301 Oryza sativa ssp. japonica HOM05D005855 ORTHO05D006406 1.3e-56 225.7 496 37.1
TPR.G32502 Trifolium pratense HOM05D005855 ORTHO05D006406 2.0e-52 211.8 176 66.5
Dinv29076 Davidia involucrata HOM05D005855 ORTHO05D006406 5.4e-50 203.8 833 26.5
AagrBONN_evm.TU.Sc2ySwM_344.4907 Anthoceros agrestis HOM05D005855 ORTHO05D006406 2.7e-49 201.4 790 29.6
Pp3c3_24970 Physcomitrium patens HOM05D005855 ORTHO05D006406 9.9e-44 183.0 381 34.1
SMO356G0323 Selaginella moellendorffii HOM05D005855 ORTHO05D006406 3.9e-40 171.0 484 33.9
Mapoly0189s0010 Marchantia polymorpha HOM05D005855 ORTHO05D006406 4.3e-39 167.5 668 29.2
GSVIVG01007186001 Vitis vinifera HOM05D005855 ORTHO05D006406 5.8e-36 157.1 117 66.7
Cpa.g.c37190 Carica papaya HOM05D005855 ORTHO05D006406 1.6e-33 149.1 169 49.7
CBR_g39948 Chara braunii HOM05D005855 ORTHO05D006406 8.4e-27 126.7 169 48.5
Zm00001eb310680 Zea mays HOM05D000012 ORTHO05D006406 1.9e-23 115.5 256 35.2
Zm00001eb381860 Zea mays HOM05D000012 ORTHO05D006406 3.1e-13 81.6 90 51.1
Nn8g40536 Nelumbo nucifera HOM05D005855 ORTHO05D006406 1.3e-11 76.3 73 53.4
Zm00001eb367440 Zea mays HOM05D005855 ORTHO05D006406 2.9e-11 75.1 112 49.1
Cre12.g550152 Chlamydomonas reinhardtii HOM05D005855 ORTHO05D006406 6.1e-09 67.4 124 41.1
Lj9A5T14 Lonicera japonica HOM05D016202 ORTHO05D006406 3.3e-07 61.6 171 33.9
Lju1609C0T10 Lonicera japonica HOM05D005855 ORTHO05D006406 3.3e-07 61.6 70 50.0
Lju1609C0G6 Lonicera japonica HOM05D016202 ORTHO05D006406 7.4e-07 60.5 67 47.8
Lju1034A2T22 Lonicera japonica HOM05D016202 ORTHO05D006406 1.3e-06 59.7 73 42.5
RcHm_v2.0_Chr5g0011851 Rosa chinensis HOM05D005855 ORTHO05D006406 2.8e-06 58.5 47 59.6


User provided reference genes

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