Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G238400 Glycine max HOM05D006382 ORTHO05D008938 0.0e+00 1086.2 521 100.0
Glyma.09G254600 Glycine max HOM05D006382 ORTHO05D008938 4.0e-290 1000.7 522 94.3
Phvul.008G058200 Phaseolus vulgaris HOM05D006382 ORTHO05D008938 1.2e-278 962.6 522 89.5
VMungo1383G3370 Vigna mungo HOM05D006382 ORTHO05D008938 4.6e-278 960.7 522 88.7
Lj1g0001840 Lotus japonicus HOM05D006382 ORTHO05D008938 1.1e-258 896.3 528 83.5
Lalb_Chr19g0126881 Lupinus albus HOM05D006382 ORTHO05D008938 8.2e-251 870.2 521 80.6
TPR.G35789 Trifolium pratense HOM05D006382 ORTHO05D008938 2.0e-244 849.0 524 79.4
Medtr7g079030 Medicago truncatula HOM05D006382 ORTHO05D008938 4.4e-244 847.8 525 79.6
Psat3g105480 Pisum sativum HOM05D006382 ORTHO05D008938 5.9e-241 837.4 526 78.1
Ca_07943_v3 Cicer arietinum L. HOM05D006382 ORTHO05D008938 2.3e-232 808.9 456 84.0
arahy.Tifrunner.gnm1.ann1.FF5BCH Arachis hypogaea HOM05D006382 ORTHO05D008938 1.1e-231 806.6 537 74.9
arahy.Tifrunner.gnm1.ann1.Z348XU Arachis hypogaea HOM05D006382 ORTHO05D008938 1.5e-231 806.2 533 75.0
Cfa003871 Carpinus fangiana HOM05D006382 ORTHO05D008938 2.5e-223 778.9 511 72.4
CiPaw.01G067600 Carya illinoinensis HOM05D006382 ORTHO05D008938 1.2e-222 776.5 465 77.0
Atru.chr5.564 Acer truncatum HOM05D006382 ORTHO05D008938 6.2e-222 774.2 472 77.1
TWI59G0052 Tripterygium wilfordii HOM05D006382 ORTHO05D008938 1.8e-221 772.7 459 78.2
Prupe.2G177700 Prunus persica HOM05D006382 ORTHO05D008938 6.8e-221 770.8 523 71.3
Duzib133G1372 Durio zibethinus HOM05D006382 ORTHO05D008938 1.2e-220 770.0 525 70.5
Potri.002G164700 Populus trichocarpa HOM05D006382 ORTHO05D008938 3.4e-220 768.5 462 76.8
QL04p055600 Quercus lobata HOM05D006382 ORTHO05D008938 1.1e-218 763.5 498 73.1
MSTRG.17299 Avicennia marina HOM05D006382 ORTHO05D008938 1.2e-217 760.0 485 73.6
Dinv43864 Davidia involucrata HOM05D006382 ORTHO05D008938 2.1e-217 759.2 478 74.3
MD01G1071500 Malus domestica HOM05D006382 ORTHO05D008938 2.1e-217 759.2 525 70.3
Thecc.01G352300 Theobroma cacao HOM05D006382 ORTHO05D008938 2.1e-217 759.2 521 70.2
SGA_v2.0_scaffold4G02278 Striga asiatica HOM05D006382 ORTHO05D008938 2.7e-217 758.8 466 74.5
Sed0009049 Sechium edule HOM05D006382 ORTHO05D008938 7.8e-217 757.3 460 75.7
Ciclev10019743m.g Citrus clementina HOM05D006382 ORTHO05D008938 1.7e-216 756.1 521 69.7
Oeu063675.1 Olea europaea HOM05D006382 ORTHO05D008938 2.3e-216 755.7 465 75.1
Eucgr.D02325 Eucalyptus grandis HOM05D006382 ORTHO05D008938 3.0e-216 755.4 526 70.3
Cpa.g.sc11.72 Carica papaya HOM05D006382 ORTHO05D008938 5.1e-216 754.6 527 70.4
Hma1.2p1_0335F.1_g128860 Hydrangea macrophylla HOM05D006382 ORTHO05D008938 8.6e-216 753.8 465 75.9
Actinidia20164 Actinidia chinensis HOM05D006382 ORTHO05D008938 1.1e-215 753.4 470 75.5
Sabra02G0146800 Salix brachista HOM05D006382 ORTHO05D008938 3.3e-215 751.9 488 72.5
MELO3C006077.2 Cucumis melo HOM05D006382 ORTHO05D008938 9.5e-215 750.4 455 75.8
Nn1g01689 Nelumbo nucifera HOM05D006382 ORTHO05D008938 4.7e-214 748.0 489 72.2
Sopen01g038910 Solanum pennellii HOM05D006382 ORTHO05D008938 4.7e-214 748.0 499 71.7
RcHm_v2.0_Chr1g0357731 Rosa chinensis HOM05D006382 ORTHO05D008938 8.1e-214 747.3 519 69.6
PGSC0003DMG400000065 Solanum tuberosum HOM05D006382 ORTHO05D008938 1.1e-213 746.9 457 76.1
Nitab4.5_0000915g0130 Nicotiana tabacum HOM05D006382 ORTHO05D008938 3.1e-213 745.3 510 70.2
GSVIVG01026968001 Vitis vinifera HOM05D006382 ORTHO05D008938 3.1e-213 745.3 465 74.2
Solyc01g095120.3 Solanum lycopersicum HOM05D006382 ORTHO05D008938 4.0e-213 745.0 499 71.3
Atru.BG.55.p Acer truncatum HOM05D006382 ORTHO05D008938 6.8e-213 744.2 453 77.0
FAN01G1899 Fragaria x ananassa HOM05D006382 ORTHO05D008938 6.8e-213 744.2 492 71.1
SalBow3G4256 Salvia bowleyana HOM05D006382 ORTHO05D008938 2.0e-212 742.7 481 71.7
FvH4_7g15410 Fragaria vesca HOM05D006382 ORTHO05D008938 4.4e-212 741.5 458 74.7
ClCG05G001220 Citrullus lanatus HOM05D006382 ORTHO05D008938 5.8e-212 741.1 514 69.8
Gohir.A11G092400 Gossypium hirsutum HOM05D006382 ORTHO05D008938 5.8e-212 741.1 525 68.2
CsaV3_3G008570 Cucumis sativus L. HOM05D006382 ORTHO05D008938 1.3e-211 740.0 455 74.5
Gorai.007G103500 Gossypium raimondii HOM05D006382 ORTHO05D008938 1.3e-211 740.0 526 68.3
AL5G43900 Arabidopsis lyrata HOM05D006382 ORTHO05D008938 1.7e-211 739.6 458 75.1
C06p27550 Brassica napus HOM05D006382 ORTHO05D008938 1.7e-211 739.6 455 75.4
vmacro13226 Vaccinium macrocarpon HOM05D006382 ORTHO05D008938 1.7e-211 739.6 498 70.5
BolC6t37923H Brassica oleracea HOM05D006382 ORTHO05D008938 2.2e-211 739.2 455 75.6
CSS0031254 Camellia sinensis var. sinensis HOM05D006382 ORTHO05D008938 2.2e-211 739.2 488 70.7
CANSAT56G1207 Cannabis sativa HOM05D006382 ORTHO05D008938 2.2e-211 739.2 498 70.7
A07p25560 Brassica napus HOM05D006382 ORTHO05D008938 4.9e-211 738.0 486 72.0
BraA07t30197Z Brassica rapa HOM05D006382 ORTHO05D008938 8.3e-211 737.3 465 74.2
AT3G61540 Arabidopsis thaliana HOM05D006382 ORTHO05D008938 1.1e-210 736.9 458 75.8
BcaB02g07372 Brassica carinata HOM05D006382 ORTHO05D008938 1.9e-210 736.1 527 68.7
BcaC08g45134 Brassica carinata HOM05D006382 ORTHO05D008938 1.9e-210 736.1 524 68.9
Sp5g01870 Schrenkiella parvula HOM05D006382 ORTHO05D008938 4.1e-210 734.9 458 74.9
Thhalv10005890m.g Eutrema salsugineum HOM05D006382 ORTHO05D008938 5.4e-210 734.6 500 70.8
Aqoxy7G00230 Aquilegia oxysepala HOM05D006382 ORTHO05D008938 7.1e-210 734.2 518 67.6
Carub.0005s2823 Capsella rubella HOM05D006382 ORTHO05D008938 2.1e-209 732.6 458 74.0
THA.LOC104827604 Tarenaya hassleriana HOM05D006382 ORTHO05D008938 2.1e-209 732.6 529 67.3
Rhsim07G0010300 Rhododendron simsii HOM05D006382 ORTHO05D008938 2.7e-209 732.3 488 71.1
CARHR171860 Cardamine hirsuta HOM05D006382 ORTHO05D008938 1.0e-208 730.3 457 74.4
Peaxi162Scf00020g01516 Petunia axillaris HOM05D006382 ORTHO05D008938 2.3e-208 729.2 523 68.3
PSO384G0256 Papaver somniferum HOM05D006382 ORTHO05D008938 1.1e-207 726.9 485 70.9
CSS0000318 Camellia sinensis var. sinensis HOM05D006382 ORTHO05D008938 1.9e-207 726.1 481 71.3
Haze_15566 Corylus avellana HOM05D006382 ORTHO05D008938 1.9e-207 726.1 548 66.2
PSO266G0056 Papaver somniferum HOM05D006382 ORTHO05D008938 9.5e-207 723.8 473 71.7
FAN06G2792 Fragaria x ananassa HOM05D006382 ORTHO05D008938 2.1e-206 722.6 487 69.8
FAN03G1976 Fragaria x ananassa HOM05D006382 ORTHO05D008938 4.0e-205 718.4 487 69.6
HPP92_008800 Vanilla planifolia HOM05D006382 ORTHO05D008938 1.2e-204 716.8 451 72.7
Nitab4.5_0010695g0050 Nicotiana tabacum HOM05D006382 ORTHO05D008938 3.4e-204 715.3 531 66.7
Lj9C589T7 Lonicera japonica HOM05D006382 ORTHO05D008938 9.9e-204 713.8 498 67.9
Actinidia10076 Actinidia chinensis HOM05D006382 ORTHO05D008938 3.8e-203 711.8 451 74.5
Sc01g0003200 Simmondsia chinensis HOM05D006382 ORTHO05D008938 1.2e-201 706.8 465 70.3
HanXRQChr17g0562131 Helianthus annuus HOM05D006382 ORTHO05D008938 1.6e-201 706.4 452 71.7
MBI06_g33533_MAGBIO Magnolia biondii HOM05D006382 ORTHO05D008938 6.0e-201 704.5 453 72.8
EL10Ac1g00353 Beta vulgaris HOM05D006382 ORTHO05D008938 1.0e-200 703.7 473 69.1
DCAR_005361 Daucus carota HOM05D006382 ORTHO05D008938 3.0e-200 702.2 500 65.8
FAN06G0271 Fragaria x ananassa HOM05D006382 ORTHO05D008938 3.0e-200 702.2 458 71.4
ECA234G1133 Erigeron canadensis HOM05D006382 ORTHO05D008938 8.7e-200 700.7 452 71.0
Cc02_g38570 Coffea canephora HOM05D006382 ORTHO05D008938 1.6e-198 696.4 461 71.6
ATR0721G029 Amborella trichopoda HOM05D006382 ORTHO05D008938 5.3e-197 691.4 452 71.9
AUR62004414 Chenopodium quinoa HOM05D006382 ORTHO05D008938 5.3e-197 691.4 509 65.4
CDE10G0280 Ceratophyllum demersum HOM05D006382 ORTHO05D008938 1.1e-194 683.7 512 64.5
CANSAT56G3955 Cannabis sativa HOM05D006382 ORTHO05D008938 5.3e-189 664.8 463 68.3
Aa31LG10G15440 Aethionema arabicum HOM05D006382 ORTHO05D008938 3.4e-188 662.1 441 71.0
Lsat_1_v5_gn_4_35160 Lactuca sativa HOM05D006382 ORTHO05D008938 6.4e-187 657.9 463 67.4
Pp3c20_22770 Physcomitrium patens HOM05D006382 ORTHO05D008938 1.2e-180 637.1 449 63.7
unitig_747.g21323 Utricularia gibba HOM05D000887 ORTHO05D000908 1.4e-178 630.2 471 64.1
SMO134G0292 Selaginella moellendorffii HOM05D006382 ORTHO05D008938 1.3e-174 617.1 447 62.9
Mapoly0179s0013 Marchantia polymorpha HOM05D006382 ORTHO05D008938 2.4e-173 612.8 451 62.3
COL.COLO4_12779 Corchorus olitorius HOM05D006382 ORTHO05D008938 1.7e-171 606.7 459 64.7
Ah.05g180140 Amaranthus hybridus HOM05D006382 ORTHO05D008938 2.5e-170 602.8 474 60.8
AUR62022620 Chenopodium quinoa HOM05D006382 ORTHO05D008938 4.2e-170 602.1 490 60.4
CAN.G78.131 Capsicum annuum HOM05D006382 ORTHO05D008938 9.7e-167 590.9 366 75.7
Migut.B01800 Erythranthe guttata HOM05D006382 ORTHO05D008938 5.3e-165 585.1 516 56.6
Gohir.D11G097200 Gossypium hirsutum HOM05D006382 ORTHO05D008938 1.3e-158 563.9 429 64.6
Manes.05G029200 Manihot esculenta HOM05D006382 ORTHO05D008938 4.8e-158 562.0 382 71.2
Oeu063676.1 Olea europaea HOM05D006382 ORTHO05D008938 8.8e-136 488.0 484 53.9
TAR629G1903 Trochodendron aralioides HOM05D006382 ORTHO05D008938 4.8e-134 482.3 360 65.6
Cre03.g193700 Chlamydomonas reinhardtii HOM05D006382 ORTHO05D008938 5.2e-128 462.2 452 50.9
Potri.014G090601 Populus trichocarpa HOM05D006382 ORTHO05D008938 1.1e-122 444.5 326 67.5
MCO14G065 Micromonas commoda HOM05D006382 ORTHO05D008938 6.6e-115 418.7 475 46.7
Zm00001eb375690 Zea mays HOM05D006382 ORTHO05D008938 1.6e-105 387.5 273 68.5
PRCOL_00004635 Prasinoderma coloniale HOM05D006382 ORTHO05D008938 1.4e-101 374.4 478 43.7
Cfa025852 Carpinus fangiana HOM05D006382 ORTHO05D008938 9.3e-85 318.5 451 40.1
Os06g0163600 Oryza sativa ssp. japonica HOM05D006382 ORTHO05D008938 2.5e-42 177.6 100 79.0
SMO139G0016 Selaginella moellendorffii HOM05D006382 ORTHO05D376983 1.0e-38 165.6 226 38.9
Hma1.2p1_0036F.1_g022810 Hydrangea macrophylla HOM05D006382 ORTHO05D228417 6.3e-33 146.4 96 72.9
Hma1.2p1_0036F.1_g022815 Hydrangea macrophylla HOM05D006382 ORTHO05D228242 6.3e-33 146.4 96 72.9
Hma1.2p1_0515F.1_g170355 Hydrangea macrophylla HOM05D006382 ORTHO05D228454 6.3e-33 146.4 96 72.9
Hma1.2p1_1019F.1_g248455 Hydrangea macrophylla HOM05D006382 ORTHO05D228422 6.3e-33 146.4 96 72.9
SMO165G0168 Selaginella moellendorffii HOM05D006382 ORTHO05D374182 7.5e-26 122.9 280 30.7
BolC4t24936H Brassica oleracea HOM05D006382 ORTHO05D024383 9.4e-21 105.9 78 61.5
C04p33670 Brassica napus HOM05D006382 ORTHO05D024383 3.8e-14 84.0 57 66.7
Ah.05g180150 Amaranthus hybridus HOM05D006382 ORTHO05D060446 4.4e-10 70.5 65 55.4
BcaB04g18088 Brassica carinata HOM05D006382 ORTHO05D024383 5.7e-10 70.1 43 76.7
CsaV3_3G008600 Cucumis sativus L. HOM05D006382 ORTHO05D172594 1.8e-08 65.1 40 72.5
Actinidia17930 Actinidia chinensis HOM05D006382 ORTHO05D008938 2.7e-07 61.2 41 75.6


User provided reference genes

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