Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G236233 Glycine max HOM05D004844 ORTHO05D006036 1.0e-213 746.5 390 100.0
Glyma.02G003100 Glycine max HOM05D004844 ORTHO05D006036 4.9e-208 727.6 394 97.2
Glyma.10G005700 Glycine max HOM05D004844 ORTHO05D006036 9.7e-204 713.4 394 95.7
VMungo0720G2226 Vigna mungo HOM05D004844 ORTHO05D006036 2.0e-193 679.1 394 89.6
Phvul.007G274500 Phaseolus vulgaris HOM05D004844 ORTHO05D006036 5.0e-192 674.5 394 88.6
Lj6g0000403 Lotus japonicus HOM05D004844 ORTHO05D006036 9.7e-180 633.6 392 83.7
Medtr1g442830 Medicago truncatula HOM05D004844 ORTHO05D006036 1.7e-179 632.9 394 83.0
Medtr1g064300 Medicago truncatula HOM05D004844 ORTHO05D006036 2.4e-178 629.0 394 83.2
Lalb_Chr25g0284481 Lupinus albus HOM05D004844 ORTHO05D006036 7.0e-178 627.5 395 82.8
arahy.Tifrunner.gnm1.ann1.Q1MRHA Arachis hypogaea HOM05D004844 ORTHO05D006036 7.7e-177 624.0 393 83.2
Psat1g047040 Pisum sativum HOM05D004844 ORTHO05D006036 2.5e-175 619.0 394 81.2
TPR.G25170 Trifolium pratense HOM05D004844 ORTHO05D006036 2.0e-172 609.4 394 79.7
arahy.Tifrunner.gnm1.ann1.H7MRPA Arachis hypogaea HOM05D004844 ORTHO05D006036 5.7e-172 607.8 431 76.1
Ca_12009_v3 Cicer arietinum L. HOM05D004844 ORTHO05D006036 2.8e-171 605.5 394 78.9
arahy.Tifrunner.gnm1.ann1.79UB1D Arachis hypogaea HOM05D004844 ORTHO05D006036 1.1e-170 603.6 430 75.6
Cfa008853 Carpinus fangiana HOM05D004844 ORTHO05D006036 1.6e-158 563.1 396 76.0
Thecc.02G325500 Theobroma cacao HOM05D004844 ORTHO05D006036 8.0e-158 560.8 394 72.6
Cpa.g.sc1.164 Carica papaya HOM05D004844 ORTHO05D006036 3.4e-156 555.4 394 72.8
PGR102G1068 Punica granatum HOM05D004844 ORTHO05D006036 3.7e-155 552.0 394 71.8
Manes.17G024283 Manihot esculenta HOM05D004844 ORTHO05D006036 6.3e-155 551.2 394 72.8
Actinidia19906 Actinidia chinensis HOM05D004844 ORTHO05D006036 2.0e-153 546.2 395 72.7
Ciclev10030646m.g Citrus clementina HOM05D004844 ORTHO05D006036 2.7e-153 545.8 394 71.1
DCAR_022184 Daucus carota HOM05D004844 ORTHO05D006036 2.7e-153 545.8 387 72.1
CSS0013036 Camellia sinensis var. sinensis HOM05D004844 ORTHO05D006036 7.8e-153 544.3 395 71.9
Gohir.A04G145600 Gossypium hirsutum HOM05D004844 ORTHO05D006036 1.3e-152 543.5 393 70.5
TAR627G0787 Trochodendron aralioides HOM05D004844 ORTHO05D006036 1.3e-152 543.5 394 71.8
Cc11_g11690 Coffea canephora HOM05D004844 ORTHO05D006036 1.7e-152 543.1 394 70.8
Eucgr.B03138 Eucalyptus grandis HOM05D004844 ORTHO05D006036 1.7e-152 543.1 394 71.1
Gohir.D04G190100 Gossypium hirsutum HOM05D004844 ORTHO05D006036 5.0e-152 541.6 393 69.7
GSVIVG01012255001 Vitis vinifera HOM05D004844 ORTHO05D006036 3.3e-151 538.9 394 71.3
Gorai.012G185400 Gossypium raimondii HOM05D004844 ORTHO05D006036 5.6e-151 538.1 393 69.5
Potri.010G140100 Populus trichocarpa HOM05D004844 ORTHO05D006036 1.2e-150 537.0 397 72.0
FvH4_4g29570 Fragaria vesca HOM05D004844 ORTHO05D006036 1.6e-150 536.6 393 69.7
Prupe.1G290900 Prunus persica HOM05D004844 ORTHO05D006036 1.6e-150 536.6 394 70.6
MD16G1058200 Malus domestica HOM05D004844 ORTHO05D006036 2.1e-150 536.2 397 71.0
TWI79G0207 Tripterygium wilfordii HOM05D004844 ORTHO05D006036 2.1e-150 536.2 394 68.5
RcHm_v2.0_Chr4g0437801 Rosa chinensis HOM05D004844 ORTHO05D006036 4.0e-149 531.9 393 69.5
FAN12G1456 Fragaria x ananassa HOM05D004844 ORTHO05D006036 5.2e-149 531.6 393 69.2
CANSAT64G2735 Cannabis sativa HOM05D004844 ORTHO05D006036 8.9e-149 530.8 394 70.1
COL.COLO4_27840 Corchorus olitorius HOM05D004844 ORTHO05D006036 2.0e-148 529.6 407 67.6
Rhsim12G0073500 Rhododendron simsii HOM05D004844 ORTHO05D006036 2.6e-148 529.3 395 70.1
Sabra10G0108200 Salix brachista HOM05D004844 ORTHO05D006036 2.6e-148 529.3 396 70.7
MBI19_g00156_MAGBIO Magnolia biondii HOM05D004844 ORTHO05D006036 1.7e-147 526.6 406 68.2
FAN17G0509 Fragaria x ananassa HOM05D004844 ORTHO05D006036 2.9e-147 525.8 394 68.8
FAN22G0359 Fragaria x ananassa HOM05D004844 ORTHO05D006036 1.1e-146 523.9 393 68.4
HanXRQChr06g0168931 Helianthus annuus HOM05D004844 ORTHO05D006036 7.0e-146 521.2 394 68.8
Nn4g23518 Nelumbo nucifera HOM05D004844 ORTHO05D006036 9.2e-146 520.8 394 69.5
ECA233G1780 Erigeron canadensis HOM05D004844 ORTHO05D006036 1.0e-144 517.3 393 67.4
Sc04g0007400 Simmondsia chinensis HOM05D004844 ORTHO05D006036 1.3e-144 516.9 395 68.6
THA.LOC104821991 Tarenaya hassleriana HOM05D004844 ORTHO05D006036 5.6e-143 511.5 396 67.9
Aa31LG7G8740 Aethionema arabicum HOM05D004844 ORTHO05D006036 2.1e-142 509.6 398 66.6
Carub.0002s1569 Capsella rubella HOM05D004844 ORTHO05D006036 2.8e-142 509.2 396 65.9
FAN07G0902 Fragaria x ananassa HOM05D004844 ORTHO05D006036 8.1e-142 507.7 394 67.3
Nitab4.5_0000027g0110 Nicotiana tabacum HOM05D004844 ORTHO05D006036 8.1e-142 507.7 394 67.5
AL2G28120 Arabidopsis lyrata HOM05D004844 ORTHO05D006036 1.8e-141 506.5 396 65.9
A02p15610 Brassica napus HOM05D004844 ORTHO05D006036 2.3e-141 506.1 397 65.0
C02p25790 Brassica napus HOM05D004844 ORTHO05D006036 3.1e-141 505.8 397 64.7
Lsat_1_v5_gn_8_35620 Lactuca sativa HOM05D004844 ORTHO05D006036 3.1e-141 505.8 401 65.8
CAN.G1021.26 Capsicum annuum HOM05D004844 ORTHO05D006036 4.0e-141 505.4 394 66.5
Ah.03g138670 Amaranthus hybridus HOM05D004844 ORTHO05D006036 5.2e-141 505.0 395 67.3
AT1G69070 Arabidopsis thaliana HOM05D004844 ORTHO05D006036 5.2e-141 505.0 393 65.9
Sp5g24170 Schrenkiella parvula HOM05D004844 ORTHO05D006036 5.2e-141 505.0 393 64.6
Thhalv10018096m.g Eutrema salsugineum HOM05D004844 ORTHO05D006036 6.8e-141 504.6 393 65.4
Nitab4.5_0011617g0010 Nicotiana tabacum HOM05D004844 ORTHO05D006036 1.2e-140 503.8 394 66.8
BraA02t06622Z Brassica rapa HOM05D004844 ORTHO05D006036 2.0e-140 503.1 397 64.7
BolC2t08648H Brassica oleracea HOM05D004844 ORTHO05D006036 2.6e-140 502.7 397 64.5
Solyc05g011990.4 Solanum lycopersicum HOM05D004844 ORTHO05D006036 3.4e-140 502.3 396 66.4
PGSC0003DMG400028356 Solanum tuberosum HOM05D004844 ORTHO05D006036 7.5e-140 501.1 396 66.2
Sopen05g006740 Solanum pennellii HOM05D004844 ORTHO05D006036 2.9e-139 499.2 396 66.4
Duzib251G0783 Durio zibethinus HOM05D004844 ORTHO05D006036 8.3e-139 497.7 366 69.9
AUR62003071 Chenopodium quinoa HOM05D004844 ORTHO05D006036 1.4e-138 496.9 395 65.6
Aqoxy3G03719 Aquilegia oxysepala HOM05D004844 ORTHO05D006036 4.1e-138 495.4 394 64.7
MSTRG.13461 Avicennia marina HOM05D004844 ORTHO05D006036 2.7e-137 492.7 394 66.5
ClCG08G010550 Citrullus lanatus HOM05D004844 ORTHO05D006036 1.1e-135 487.3 394 65.5
EL10Ac6g14694 Beta vulgaris HOM05D004844 ORTHO05D006036 1.5e-135 486.9 394 65.5
Dinv20143 Davidia involucrata HOM05D004844 ORTHO05D006036 1.9e-135 486.5 348 71.8
AUR62007885 Chenopodium quinoa HOM05D004844 ORTHO05D006036 2.5e-135 486.1 395 64.1
Peaxi162Scf00175g00927 Petunia axillaris HOM05D004844 ORTHO05D006036 5.6e-135 485.0 379 66.0
SGA_v2.0_scaffold287G47183 Striga asiatica HOM05D004844 ORTHO05D006036 5.6e-135 485.0 396 64.6
BcaC03g15030 Brassica carinata HOM05D004844 ORTHO05D006036 9.5e-135 484.2 393 64.4
CARHR061950 Cardamine hirsuta HOM05D004844 ORTHO05D006036 9.5e-135 484.2 396 62.9
MELO3C011408.2 Cucumis melo HOM05D004844 ORTHO05D006036 6.8e-133 478.0 394 64.5
SalBow4G3252 Salvia bowleyana HOM05D004844 ORTHO05D006036 3.4e-132 475.7 394 64.0
Sed0010809 Sechium edule HOM05D004844 ORTHO05D006036 1.7e-131 473.4 394 63.5
Atru.BG.298.p Acer truncatum HOM05D004844 ORTHO05D006036 4.9e-131 471.9 389 64.3
CDE10G1236 Ceratophyllum demersum HOM05D004844 ORTHO05D006036 6.4e-131 471.5 394 60.9
CsaV3_6G033830 Cucumis sativus L. HOM05D004844 ORTHO05D006036 8.4e-131 471.1 394 63.5
Migut.E00244 Erythranthe guttata HOM05D004844 ORTHO05D006036 3.2e-130 469.2 396 62.6
PSO782G4088 Papaver somniferum HOM05D004844 ORTHO05D006036 2.1e-129 466.5 394 61.4
PSO063G4789 Papaver somniferum HOM05D004844 ORTHO05D006036 1.9e-127 459.9 394 61.2
Os03g0598200 Oryza sativa ssp. japonica HOM05D004844 ORTHO05D006036 2.5e-127 459.5 395 61.5
ATR0827G008 Amborella trichopoda HOM05D004844 ORTHO05D006036 1.5e-124 450.3 395 59.2
Zm00001eb049910 Zea mays HOM05D004844 ORTHO05D006036 3.5e-121 439.1 393 58.8
CiPaw.06G094100 Carya illinoinensis HOM05D004844 ORTHO05D006036 6.2e-118 428.3 305 72.5
Oeu019000.3 Olea europaea HOM05D004844 ORTHO05D006036 1.8e-104 383.6 390 54.4
Nitab4.5_0000027g0130 Nicotiana tabacum HOM05D004844 ORTHO05D006036 4.3e-103 379.0 390 54.9
Pp3c13_7740 Physcomitrium patens HOM05D004844 ORTHO05D006036 6.9e-101 371.7 401 52.1
Lj6A775T24 Lonicera japonica HOM05D004844 ORTHO05D006036 2.6e-100 369.8 397 55.2
Mapoly0013s0047 Marchantia polymorpha HOM05D004844 ORTHO05D006036 1.2e-97 360.9 400 49.8
AagrBONN_evm.TU.Sc2ySwM_228.4292 Anthoceros agrestis HOM05D004844 ORTHO05D006036 2.7e-97 359.8 398 49.5
Medtr1g442820 Medicago truncatula HOM05D004844 ORTHO05D006036 1.5e-92 344.0 212 82.1
TAR623G1540 Trochodendron aralioides HOM05D004844 ORTHO05D006036 3.5e-89 332.8 260 66.9
CBR_g4135 Chara braunii HOM05D004844 ORTHO05D006036 2.6e-84 316.6 409 45.7
MD13G1058900 Malus domestica HOM05D004844 ORTHO05D006036 4.3e-79 299.3 273 60.1
unitig_62.g23699 Utricularia gibba HOM05D004844 ORTHO05D006036 2.4e-77 293.5 390 45.9
HPP92_012262 Vanilla planifolia HOM05D004844 ORTHO05D008684 1.9e-66 257.3 261 53.3
SEGI_13774 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 3.6e-65 253.1 260 51.2
Oeu063767.1 Olea europaea HOM05D004844 ORTHO05D006036 2.5e-58 230.3 158 73.4
Rhsim10G0117800 Rhododendron simsii HOM05D004844 ORTHO05D006036 5.9e-52 209.1 192 60.4
SEGI_27898 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 2.8e-41 173.7 132 67.4
PRCOL_00006390 Prasinoderma coloniale HOM05D004844 ORTHO05D006036 2.0e-36 157.5 425 29.9
TAR623G0992 Trochodendron aralioides HOM05D004844 ORTHO05D006036 1.9e-29 134.4 93 74.2
Cre06.g260850 Chlamydomonas reinhardtii HOM05D004844 ORTHO05D006036 1.8e-24 117.9 535 22.6
SEGI_15727 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 3.7e-22 110.2 115 56.5
BolC2t08646H Brassica oleracea HOM05D004844 ORTHO05D006036 1.9e-21 107.8 92 60.9
C02p25770 Brassica napus HOM05D004844 ORTHO05D006036 5.4e-21 106.3 92 60.9
TAR627G1107 Trochodendron aralioides HOM05D004844 ORTHO05D006036 2.1e-17 94.4 64 75.0
EL10Ac6g14485 Beta vulgaris HOM05D004844 ORTHO05D006036 4.4e-15 86.7 63 69.8
EL10Ac3g06594 Beta vulgaris HOM05D004844 ORTHO05D006036 5.8e-15 86.3 64 67.2
EL10Ac5g11674 Beta vulgaris HOM05D004844 ORTHO05D010835 2.2e-14 84.3 63 68.3
Cfa022757 Carpinus fangiana HOM05D004844 ORTHO05D126324 3.8e-14 83.6 391 24.8
MD13G1058800 Malus domestica HOM05D004844 ORTHO05D006036 3.8e-14 83.6 72 65.3
Oeu048129.1 Olea europaea HOM05D004844 ORTHO05D006036 3.8e-14 83.6 65 64.6
MCO13G646 Micromonas commoda HOM05D004844 ORTHO05D006036 1.7e-11 74.7 147 30.6
CAN.G1021.25 Capsicum annuum HOM05D004844 ORTHO05D006036 5.1e-11 73.2 207 28.5
SEGI_03778 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 6.6e-11 72.8 48 75.0
AagrBONN_evm.TU.Sc2ySwM_362.1117 Anthoceros agrestis HOM05D004844 ORTHO05D006036 5.6e-10 69.7 64 56.2
RcHm_v2.0_Chr1g0340811 Rosa chinensis HOM05D004844 ORTHO05D006036 2.8e-09 67.4 58 56.9
AagrBONN_evm.TU.Sc2ySwM_228.4285 Anthoceros agrestis HOM05D004844 ORTHO05D074214 1.8e-08 64.7 93 47.3
SEGI_23631 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 1.3e-06 58.5 48 66.7


User provided reference genes

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