Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G235800 Glycine max HOM05D004297 ORTHO05D005213 0.0e+00 2249.2 1122 100.0
Glyma.09G256700 Glycine max HOM05D004297 ORTHO05D005213 0.0e+00 2199.1 1122 97.9
VMungo1383G1290 Vigna mungo HOM05D004297 ORTHO05D005213 0.0e+00 2137.8 1124 94.4
Lj1g0026001 Lotus japonicus HOM05D004297 ORTHO05D005213 0.0e+00 2092.0 1124 92.3
TPR.G37786 Trifolium pratense HOM05D004297 ORTHO05D005213 0.0e+00 2054.6 1127 91.0
Medtr7g078170 Medicago truncatula HOM05D004297 ORTHO05D005213 0.0e+00 2053.5 1125 90.8
Lalb_Chr03g0038271 Lupinus albus HOM05D004297 ORTHO05D005213 0.0e+00 2051.2 1124 89.6
arahy.Tifrunner.gnm1.ann1.553FBT Arachis hypogaea HOM05D004297 ORTHO05D005213 0.0e+00 2048.1 1121 90.9
arahy.Tifrunner.gnm1.ann1.0F1BT2 Arachis hypogaea HOM05D004297 ORTHO05D005213 0.0e+00 2045.8 1121 90.8
Phvul.008G060200 Phaseolus vulgaris HOM05D004297 ORTHO05D005213 0.0e+00 2008.0 1071 93.7
Prupe.2G174200 Prunus persica HOM05D004297 ORTHO05D005213 0.0e+00 1909.8 1121 83.9
Thecc.01G355600 Theobroma cacao HOM05D004297 ORTHO05D005213 0.0e+00 1907.9 1124 84.2
Manes.01G254400 Manihot esculenta HOM05D004297 ORTHO05D005213 0.0e+00 1906.7 1122 84.0
RcHm_v2.0_Chr7g0221211 Rosa chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1898.6 1127 83.4
Dinv43843 Davidia involucrata HOM05D004297 ORTHO05D005213 0.0e+00 1892.1 1124 83.1
QL04p054287 Quercus lobata HOM05D004297 ORTHO05D005213 0.0e+00 1889.4 1130 82.8
Duzib133G0964 Durio zibethinus HOM05D004297 ORTHO05D005213 0.0e+00 1887.8 1124 82.5
Cfa003893 Carpinus fangiana HOM05D004297 ORTHO05D005213 0.0e+00 1879.0 1124 82.9
CANSAT56G3337 Cannabis sativa HOM05D004297 ORTHO05D005213 0.0e+00 1878.6 1123 82.5
FvH4_5g28900 Fragaria vesca HOM05D004297 ORTHO05D005213 0.0e+00 1877.4 1128 82.7
Potri.014G087900 Populus trichocarpa HOM05D004297 ORTHO05D005213 0.0e+00 1876.3 1125 83.7
Atru.chr5.535 Acer truncatum HOM05D004297 ORTHO05D005213 0.0e+00 1874.8 1122 82.8
Gorai.001G159200 Gossypium raimondii HOM05D004297 ORTHO05D005213 0.0e+00 1874.4 1124 82.1
FAN18G0188 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1869.0 1139 81.9
Gohir.A07G141200 Gossypium hirsutum HOM05D004297 ORTHO05D005213 0.0e+00 1866.7 1124 81.9
TWI59G0377 Tripterygium wilfordii HOM05D004297 ORTHO05D005213 0.0e+00 1864.0 1122 82.8
GSVIVG01026995001 Vitis vinifera HOM05D004297 ORTHO05D005213 0.0e+00 1859.0 1125 82.4
FAN13G2415 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1852.8 1139 81.4
Potri.002G162000 Populus trichocarpa HOM05D004297 ORTHO05D005213 0.0e+00 1852.8 1124 82.0
CiPaw.02G033500 Carya illinoinensis HOM05D004297 ORTHO05D005213 0.0e+00 1850.5 1125 81.7
Ciclev10018597m.g Citrus clementina HOM05D004297 ORTHO05D005213 0.0e+00 1839.3 1123 81.8
Cpa.g.sc11.37 Carica papaya HOM05D004297 ORTHO05D005213 0.0e+00 1836.2 1095 83.8
Sabra14G0063700 Salix brachista HOM05D004297 ORTHO05D005213 0.0e+00 1832.8 1185 78.5
PGR042G3632 Punica granatum HOM05D004297 ORTHO05D005213 0.0e+00 1832.4 1126 81.7
Gohir.D07G146700 Gossypium hirsutum HOM05D004297 ORTHO05D005213 0.0e+00 1829.7 1124 80.6
MELO3C021189.2 Cucumis melo HOM05D004297 ORTHO05D005213 0.0e+00 1824.7 1119 80.3
Actinidia10047 Actinidia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1821.2 1127 80.3
Sopen01g038660 Solanum pennellii HOM05D004297 ORTHO05D005213 0.0e+00 1818.9 1129 79.4
Eucgr.E00109 Eucalyptus grandis HOM05D004297 ORTHO05D005213 0.0e+00 1817.4 1124 80.4
Solyc01g094880.3 Solanum lycopersicum HOM05D004297 ORTHO05D005213 0.0e+00 1815.0 1129 79.1
CsaV3_6G000810 Cucumis sativus L. HOM05D004297 ORTHO05D005213 0.0e+00 1812.3 1121 79.9
Actinidia20884 Actinidia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1809.3 1125 79.8
TAR629G2795 Trochodendron aralioides HOM05D004297 ORTHO05D005213 0.0e+00 1808.9 1126 80.2
CAN.G78.102 Capsicum annuum HOM05D004297 ORTHO05D005213 0.0e+00 1807.0 1127 79.5
Cc02_g38370 Coffea canephora HOM05D004297 ORTHO05D005213 0.0e+00 1803.9 1118 80.0
Oeu036598.1 Olea europaea HOM05D004297 ORTHO05D005213 0.0e+00 1799.3 1151 78.0
Lj9C586G6 Lonicera japonica HOM05D004297 ORTHO05D005213 0.0e+00 1798.1 1125 80.3
MSTRG.17286 Avicennia marina HOM05D004297 ORTHO05D005213 0.0e+00 1790.0 1121 79.9
Duzib138G1153 Durio zibethinus HOM05D004297 ORTHO05D005213 0.0e+00 1789.2 1124 79.6
CSS0008006 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 0.0e+00 1786.5 1126 79.2
Sed0013986 Sechium edule HOM05D004297 ORTHO05D005213 0.0e+00 1785.8 1120 78.6
ClCG06G003500 Citrullus lanatus HOM05D004297 ORTHO05D005213 0.0e+00 1785.0 1187 75.8
Hund27256 Selenicereus undatus HOM05D004297 ORTHO05D005213 0.0e+00 1775.8 1120 78.8
Ca_00827_v3 Cicer arietinum L. HOM05D000005 ORTHO05D005213 0.0e+00 1775.0 950 92.7
Migut.B01779 Erythranthe guttata HOM05D004297 ORTHO05D005213 0.0e+00 1775.0 1125 78.7
PSO063G5582 Papaver somniferum HOM05D004297 ORTHO05D005213 0.0e+00 1773.8 1122 79.0
Nn6g33322 Nelumbo nucifera HOM05D004297 ORTHO05D005213 0.0e+00 1773.4 1123 78.3
TAR636G0349 Trochodendron aralioides HOM05D004297 ORTHO05D005213 0.0e+00 1769.2 1077 82.2
Aqoxy5G04078 Aquilegia oxysepala HOM05D004297 ORTHO05D005213 0.0e+00 1762.7 1128 78.8
SalBow3G3037 Salvia bowleyana HOM05D004297 ORTHO05D005213 0.0e+00 1761.9 1126 77.4
Nitab4.5_0006942g0020 Nicotiana tabacum HOM05D004297 ORTHO05D005213 0.0e+00 1753.4 1162 76.3
SGA_v2.0_scaffold78G25411 Striga asiatica HOM05D004297 ORTHO05D005213 0.0e+00 1748.4 1126 77.4
Nitab4.5_0000583g0330 Nicotiana tabacum HOM05D004297 ORTHO05D005213 0.0e+00 1744.2 1195 74.0
THA.LOC104817308 Tarenaya hassleriana HOM05D004297 ORTHO05D005213 0.0e+00 1740.7 1117 77.4
HanXRQChr04g0121341 Helianthus annuus HOM05D004297 ORTHO05D005213 0.0e+00 1739.2 1116 77.2
MD11G1239500 Malus domestica HOM05D004297 ORTHO05D005213 0.0e+00 1734.9 1035 83.0
Thhalv10005756m.g Eutrema salsugineum HOM05D004297 ORTHO05D005213 0.0e+00 1732.6 1121 76.1
DCAR_006941 Daucus carota HOM05D004297 ORTHO05D005213 0.0e+00 1731.5 1126 76.1
Peaxi162Scf00020g01027 Petunia axillaris HOM05D004297 ORTHO05D005213 0.0e+00 1720.7 1079 78.7
ECA236G0245 Erigeron canadensis HOM05D004297 ORTHO05D005213 0.0e+00 1718.4 1115 76.3
Sabra02G0129100 Salix brachista HOM05D004297 ORTHO05D005213 0.0e+00 1715.7 1247 71.7
AL5G43840 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 0.0e+00 1715.3 1121 75.6
Lsat_1_v5_gn_7_3220 Lactuca sativa HOM05D004297 ORTHO05D005213 0.0e+00 1709.5 1116 76.3
AT3G61480 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 0.0e+00 1706.8 1121 75.2
AT5G28350 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 0.0e+00 1701.0 1121 75.0
EL10Ac1g00379 Beta vulgaris HOM05D004297 ORTHO05D005213 0.0e+00 1697.6 1121 75.6
C08p36360 Brassica napus HOM05D004297 ORTHO05D005213 0.0e+00 1691.8 1121 75.3
BolC8t51219H Brassica oleracea HOM05D004297 ORTHO05D005213 0.0e+00 1691.8 1121 75.3
Carub.0005s2817 Capsella rubella HOM05D004297 ORTHO05D005213 0.0e+00 1687.2 1122 74.5
Haze_15540 Corylus avellana HOM05D004297 ORTHO05D005213 0.0e+00 1682.9 1125 76.3
BraA09t40777Z Brassica rapa HOM05D004297 ORTHO05D005213 0.0e+00 1677.9 1121 75.0
A09p53530 Brassica napus HOM05D004297 ORTHO05D005213 0.0e+00 1677.5 1121 75.0
Rhsim07G0012700 Rhododendron simsii HOM05D004297 ORTHO05D005213 0.0e+00 1671.4 1318 67.2
Dinv32504 Davidia involucrata HOM05D004297 ORTHO05D005213 0.0e+00 1662.9 1155 74.5
ATR0661G292 Amborella trichopoda HOM05D004297 ORTHO05D005213 0.0e+00 1612.8 1124 72.2
unitig_749.g14347 Utricularia gibba HOM05D004297 ORTHO05D005213 0.0e+00 1608.6 1141 71.3
Aa31LG1G27480 Aethionema arabicum HOM05D004297 ORTHO05D005213 0.0e+00 1600.9 1154 70.2
Psat3g107280 Pisum sativum HOM05D004297 ORTHO05D005213 0.0e+00 1593.6 1014 80.9
vmacro13256 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 0.0e+00 1583.9 1162 70.7
BcaC07g40648 Brassica carinata HOM05D004297 ORTHO05D005213 0.0e+00 1574.7 1117 71.5
Zm00001eb257250 Zea mays HOM05D004297 ORTHO05D005213 0.0e+00 1536.2 1128 68.7
AUR62022597 Chenopodium quinoa HOM05D004297 ORTHO05D005213 0.0e+00 1530.0 1163 69.0
Zm00001eb192800 Zea mays HOM05D004297 ORTHO05D005213 0.0e+00 1526.9 1128 68.2
Os02g0786000 Oryza sativa ssp. japonica HOM05D004297 ORTHO05D005213 0.0e+00 1525.0 1125 68.3
AL5G43780 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 0.0e+00 1495.3 1110 69.4
Sc23g0002720 Simmondsia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1441.8 867 82.6
Hma1.2p1_0071F.1_g037770 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 0.0e+00 1432.9 842 84.6
Hma1.2p1_0071F.1_g037780 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 0.0e+00 1429.5 838 84.6
CARHR171820 Cardamine hirsuta HOM05D004297 ORTHO05D005213 0.0e+00 1401.3 860 79.1
Sed0025112 Sechium edule HOM05D004297 ORTHO05D005213 0.0e+00 1299.3 1127 61.2
Sp5g01920 Schrenkiella parvula HOM05D004297 ORTHO05D005213 0.0e+00 1264.2 823 75.0
FAN08G3284 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1248.4 782 79.0
CiPaw.01G064500 Carya illinoinensis HOM05D004297 ORTHO05D005213 0.0e+00 1187.9 682 85.8
Mapoly0027s0035 Marchantia polymorpha HOM05D004297 ORTHO05D005213 0.0e+00 1121.7 1139 51.7
SHI13402 Sapria himalayana HOM05D004297 ORTHO05D005213 0.0e+00 1078.2 1521 43.7
SMO367G0176 Selaginella moellendorffii HOM05D004297 ORTHO05D005213 5.8e-310 1067.8 1119 51.0
Pp3c2_4880 Physcomitrium patens HOM05D004297 ORTHO05D005213 4.0e-295 1018.5 1148 48.3
Pp3c14_21590 Physcomitrium patens HOM05D004297 ORTHO05D005213 4.5e-278 961.8 1146 45.4
COL.COLO4_12744 Corchorus olitorius HOM05D004297 ORTHO05D005213 2.0e-265 919.8 530 87.2
CBR_g36279 Chara braunii HOM05D004297 ORTHO05D005213 1.0e-261 907.5 1383 38.1
MD01G1067900 Malus domestica HOM05D004297 ORTHO05D005213 1.3e-261 907.1 670 70.0
CDE04G2307 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 5.0e-261 905.2 676 66.3
CSS0030491 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 1.1e-255 887.5 584 78.3
AUR62004390 Chenopodium quinoa HOM05D004297 ORTHO05D005213 9.4e-244 847.8 738 60.3
Psat0ss4650g0200 Pisum sativum HOM05D004297 ORTHO05D005213 3.3e-228 796.2 614 68.7
Oeu039184.1 Olea europaea HOM05D004297 ORTHO05D005213 4.0e-202 709.5 451 76.5
CDE04G3641 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 4.2e-199 699.5 430 81.9
SEGI_29424 Sequoiadendron giganteum HOM05D004297 ORTHO05D000001 7.4e-180 635.6 420 72.1
HPP92_012694 Vanilla planifolia HOM05D004297 ORTHO05D005213 2.1e-179 634.0 590 53.7
Psat7g148560 Pisum sativum HOM05D004297 ORTHO05D005213 2.3e-149 534.3 312 85.3
COL.COLO4_12743 Corchorus olitorius HOM05D004297 ORTHO05D005213 8.2e-147 525.8 451 60.5
AUR62004391 Chenopodium quinoa HOM05D004297 ORTHO05D005213 1.6e-137 495.0 372 72.0
Peaxi162Scf41243g00005 Petunia axillaris HOM05D004297 ORTHO05D005213 9.1e-122 442.6 332 73.5
MCO14G315 Micromonas commoda HOM05D004297 ORTHO05D005213 4.7e-102 377.1 1212 28.4
PRCOL_00000293 Prasinoderma coloniale HOM05D004297 ORTHO05D005213 4.9e-91 340.5 770 32.3
Cre12.g506650 Chlamydomonas reinhardtii HOM05D004297 ORTHO05D005213 4.3e-87 327.4 1454 22.8
AagrBONN_evm.TU.Sc2ySwM_344.3195 Anthoceros agrestis HOM05D004297 ORTHO05D005213 2.7e-81 308.1 314 53.5
HPP92_012670 Vanilla planifolia HOM05D004297 ORTHO05D005213 7.3e-79 300.1 232 69.8
HPP92_012695 Vanilla planifolia HOM05D004297 ORTHO05D005213 1.1e-74 286.2 179 77.1
MD01G1068000 Malus domestica HOM05D004297 ORTHO05D005213 3.3e-71 274.6 198 76.3
BcaC07g42689 Brassica carinata HOM05D004297 ORTHO05D005213 4.9e-67 260.8 186 68.3
Sc23g0002730 Simmondsia chinensis HOM05D004297 ORTHO05D005213 1.9e-66 258.8 167 71.3
Ah.05g180350 Amaranthus hybridus HOM05D004297 ORTHO05D005213 1.8e-61 242.3 206 58.3
vmacro23481 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 4.0e-61 241.1 294 46.9
TAR629G3312 Trochodendron aralioides HOM05D004297 ORTHO05D005213 1.8e-56 225.7 212 57.5
AagrBONN_evm.TU.Sc2ySwM_344.3204 Anthoceros agrestis HOM05D004297 ORTHO05D005213 1.9e-55 222.2 316 38.3
CSS0029755 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 2.4e-53 215.3 592 32.6
BolC6t37919H Brassica oleracea HOM05D004297 ORTHO05D005213 1.9e-47 195.7 212 57.5
C06p27520 Brassica napus HOM05D004297 ORTHO05D005213 1.8e-45 189.1 212 54.7
Lsat_1_v5_gn_9_9281 Lactuca sativa HOM05D004297 ORTHO05D005213 6.5e-43 180.6 327 41.0
SEGI_39496 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 1.9e-42 179.1 248 40.7
Cc02_g24300 Coffea canephora HOM05D004297 ORTHO05D005213 1.3e-38 166.4 169 52.1
Cfa026409 Carpinus fangiana HOM05D004297 ORTHO05D005213 3.4e-36 158.3 711 23.6
Rhsim06G0128600 Rhododendron simsii HOM05D000263 ORTHO05D000213 5.0e-35 154.5 183 51.4
arahy.Tifrunner.gnm1.ann1.K3XHZI Arachis hypogaea HOM05D004297 ORTHO05D005213 5.5e-34 151.0 86 84.9
MD11G1239400 Malus domestica HOM05D004297 ORTHO05D005213 1.0e-32 146.7 87 82.8
SEGI_34049 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 5.9e-28 131.0 87 74.7
SEGI_01640 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 1.5e-26 126.3 85 64.7
Rhsim06G0126700 Rhododendron simsii HOM05D000263 ORTHO05D000213 2.3e-24 119.0 166 44.0
CSS0014634 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 6.7e-24 117.5 138 53.6
Cpa.g.sc11.39 Carica papaya HOM05D004297 ORTHO05D005213 2.0e-23 115.9 65 84.6
AT5G28442 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 8.2e-22 110.5 74 73.0
VMungo0464G0057 Vigna mungo HOM05D004297 ORTHO05D005213 3.5e-20 105.1 69 76.8
Rhsim12G0103300 Rhododendron simsii HOM05D004297 ORTHO05D339569 2.2e-19 102.4 161 39.1
arahy.Tifrunner.gnm1.ann1.WWIQ7K Arachis hypogaea HOM05D004297 ORTHO05D005213 6.5e-19 100.9 58 82.8
CARHR057240 Cardamine hirsuta HOM05D004297 ORTHO05D005213 2.1e-17 95.9 67 62.7
Hma1.2p1_0733F.1_g210090 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 2.7e-17 95.5 60 75.0
RcHm_v2.0_Chr1g0356901 Rosa chinensis HOM05D004297 ORTHO05D005213 6.8e-16 90.9 95 53.7
CSS0021987 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 1.3e-14 86.7 80 57.5
RcHm_v2.0_Chr1g0356921 Rosa chinensis HOM05D004297 ORTHO05D005213 1.7e-14 86.3 64 65.6
RcHm_v2.0_Chr1g0356891 Rosa chinensis HOM05D004297 ORTHO05D005213 3.1e-13 82.0 45 82.2
arahy.Tifrunner.gnm1.ann1.ABA0S6 Arachis hypogaea HOM05D004297 ORTHO05D005213 2.0e-12 79.3 47 78.7
Rhsim06G0128400 Rhododendron simsii HOM05D000263 ORTHO05D000213 3.5e-12 78.6 56 67.9
Lsat_1_v5_gn_4_49241 Lactuca sativa HOM05D004297 ORTHO05D005213 1.3e-11 76.6 55 63.6
arahy.Tifrunner.gnm1.ann1.19V8U8 Arachis hypogaea HOM05D000005 ORTHO05D000012 3.8e-11 75.1 71 56.3
Ah.05g180910 Amaranthus hybridus HOM05D000862 ORTHO05D000943 4.2e-10 71.6 49 67.3
CSS0028965 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 4.0e-08 65.1 43 60.5
RcHm_v2.0_Chr1g0356911 Rosa chinensis HOM05D004297 ORTHO05D005213 5.7e-07 61.2 34 70.6
Nn1g01614 Nelumbo nucifera HOM05D004297 ORTHO05D005213 3.7e-06 58.5 41 61.0


User provided reference genes

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