Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G233000 Glycine max HOM05D000509 ORTHO05D006393 4.6e-68 261.2 138 100.0
VMungo0540G0837 Vigna mungo HOM05D000509 ORTHO05D006393 2.0e-58 229.2 138 88.4
VMungo1383G0114 Vigna mungo HOM05D000509 ORTHO05D006393 3.1e-56 221.9 138 85.5
Phvul.008G062400 Phaseolus vulgaris HOM05D000509 ORTHO05D006393 1.0e-54 216.9 138 84.1
Phvul.008G065500 Phaseolus vulgaris HOM05D000509 ORTHO05D006393 1.4e-51 206.5 138 79.7
Ca_07920_v3 Cicer arietinum L. HOM05D000509 ORTHO05D006393 1.2e-44 183.3 138 74.6
arahy.Tifrunner.gnm1.ann1.NYL5F5 Arachis hypogaea HOM05D000509 ORTHO05D006393 1.8e-43 179.5 140 70.0
arahy.Tifrunner.gnm1.ann1.E8SAKG Arachis hypogaea HOM05D000509 ORTHO05D006393 5.2e-43 177.9 140 70.0
Lj1g0015308 Lotus japonicus HOM05D000509 ORTHO05D006393 2.7e-39 165.6 138 68.1
Medtr8g095630 Medicago truncatula HOM05D000509 ORTHO05D006393 4.5e-39 164.9 138 68.1
Lalb_Chr03g0038131 Lupinus albus HOM05D000509 ORTHO05D006393 1.7e-38 162.9 138 68.1
Psat3g108360 Pisum sativum HOM05D000509 ORTHO05D006393 2.0e-34 149.4 137 60.6
CiPaw.01G061300 Carya illinoinensis HOM05D000509 ORTHO05D006393 2.8e-33 145.6 139 61.2
Dinv41795 Davidia involucrata HOM05D000509 ORTHO05D006393 2.8e-33 145.6 138 60.1
Cpa.g.sc11.3 Carica papaya HOM05D000509 ORTHO05D006393 8.3e-33 144.1 134 61.2
CiPaw.02G030900 Carya illinoinensis HOM05D000509 ORTHO05D006393 8.3e-33 144.1 139 59.0
Medtr7g077710 Medicago truncatula HOM05D000509 ORTHO05D006393 7.0e-32 141.0 138 59.4
QL93p0259_0027 Quercus lobata HOM05D000509 ORTHO05D006393 4.5e-31 138.3 138 56.5
Rhsim07G0117300 Rhododendron simsii HOM05D000509 ORTHO05D006393 1.7e-30 136.3 142 52.8
TWI14G0500 Tripterygium wilfordii HOM05D000509 ORTHO05D006393 2.9e-30 135.6 135 57.8
Haze_15506 Corylus avellana HOM05D000509 ORTHO05D006393 1.9e-29 132.9 122 59.0
Prupe.2G170600 Prunus persica HOM05D000509 ORTHO05D006393 3.3e-29 132.1 138 53.6
CSS0014656 Camellia sinensis var. sinensis HOM05D000509 ORTHO05D006393 4.2e-29 131.7 138 55.8
QL01p005382 Quercus lobata HOM05D000509 ORTHO05D006393 7.2e-29 131.0 138 55.1
Eucgr.B00993 Eucalyptus grandis HOM05D000509 ORTHO05D006393 1.2e-28 130.2 132 53.8
Thecc.04G199400 Theobroma cacao HOM05D000509 ORTHO05D006393 1.2e-28 130.2 135 56.3
Eucgr.B00880 Eucalyptus grandis HOM05D000509 ORTHO05D006393 1.6e-28 129.8 132 54.5
FvH4_7g14280 Fragaria vesca HOM05D000509 ORTHO05D006393 2.1e-28 129.4 141 60.3
Cfa003925 Carpinus fangiana HOM05D000509 ORTHO05D006393 2.8e-28 129.0 121 57.9
MD07G1137000 Malus domestica HOM05D000509 ORTHO05D006393 6.1e-28 127.9 138 52.9
TPR.G37720 Trifolium pratense HOM05D000509 ORTHO05D006393 1.8e-27 126.3 114 64.0
Gohir.A02G020500 Gossypium hirsutum HOM05D000509 ORTHO05D006393 8.9e-27 124.0 135 52.6
Gohir.A08G013720 Gossypium hirsutum HOM05D000509 ORTHO05D006393 8.9e-27 124.0 135 52.6
Ciclev10022504m.g Citrus clementina HOM05D000509 ORTHO05D006393 1.2e-26 123.6 111 61.3
Actinidia12704 Actinidia chinensis HOM05D000509 ORTHO05D006393 1.5e-26 123.2 141 53.2
Manes.07G019100 Manihot esculenta HOM05D000509 ORTHO05D006393 3.4e-26 122.1 138 52.2
GSVIVG01008341001 Vitis vinifera HOM05D000509 ORTHO05D006393 3.4e-26 122.1 134 55.2
Gohir.D02G024500 Gossypium hirsutum HOM05D000509 ORTHO05D006393 4.4e-26 121.7 135 51.9
PGR042G3203 Punica granatum HOM05D000509 ORTHO05D006393 5.7e-26 121.3 134 50.0
Potri.016G069200 Populus trichocarpa HOM05D000509 ORTHO05D006393 7.5e-26 120.9 139 54.0
Duzib151G0093 Durio zibethinus HOM05D000509 ORTHO05D006393 9.8e-26 120.6 134 52.2
Actinidia33421 Actinidia chinensis HOM05D001542 ORTHO05D001416 1.3e-25 120.2 140 50.7
MBI17_g24690_MAGBIO Magnolia biondii HOM05D000509 ORTHO05D006393 1.3e-25 120.2 136 49.3
Glyma.09G259300 Glycine max HOM05D000509 ORTHO05D006393 1.7e-25 119.8 80 81.2
Dinv32484 Davidia involucrata HOM05D000509 ORTHO05D006393 2.9e-25 119.0 114 59.6
Gorai.005G030400 Gossypium raimondii HOM05D000509 ORTHO05D006393 2.9e-25 119.0 135 51.9
CSS0014005 Camellia sinensis var. sinensis HOM05D000509 ORTHO05D006393 4.9e-25 118.2 138 52.9
TAR636G2420 Trochodendron aralioides HOM05D000509 ORTHO05D006393 4.9e-25 118.2 138 52.9
Manes.10G122200 Manihot esculenta HOM05D000509 ORTHO05D006393 6.3e-25 117.9 140 52.9
Sabra02G0116600 Salix brachista HOM05D000509 ORTHO05D006393 8.3e-25 117.5 137 50.4
MSTRG.20833 Avicennia marina HOM05D000509 ORTHO05D006393 1.1e-24 117.1 136 50.0
FAN03G2840 Fragaria x ananassa HOM05D000509 ORTHO05D006393 1.4e-24 116.7 139 54.0
FAN06G1484 Fragaria x ananassa HOM05D000509 ORTHO05D006393 1.8e-24 116.3 164 51.8
RcHm_v2.0_Chr1g0355271 Rosa chinensis HOM05D000509 ORTHO05D006393 3.2e-24 115.5 137 54.0
DCAR_019105 Daucus carota HOM05D000509 ORTHO05D006393 4.1e-24 115.2 138 50.7
FAN10G1528 Fragaria x ananassa HOM05D000509 ORTHO05D006393 4.1e-24 115.2 141 54.6
FAN10G1645 Fragaria x ananassa HOM05D000509 ORTHO05D006393 4.1e-24 115.2 141 54.6
Prupe.1G174800 Prunus persica HOM05D000509 ORTHO05D006393 4.6e-23 111.7 133 48.1
CAN.G78.80 Capsicum annuum HOM05D000509 ORTHO05D006393 5.9e-23 111.3 138 47.1
MD01G1060700 Malus domestica HOM05D000509 ORTHO05D006393 1.0e-22 110.5 138 47.8
Nn6g33420 Nelumbo nucifera HOM05D000509 ORTHO05D006393 1.0e-22 110.5 135 51.9
Rhsim07G0117600 Rhododendron simsii HOM05D000509 ORTHO05D006393 1.0e-22 110.5 142 48.6
TWI23G0635 Tripterygium wilfordii HOM05D000509 ORTHO05D006393 1.0e-22 110.5 138 49.3
Nitab4.5_0000583g0080 Nicotiana tabacum HOM05D000509 ORTHO05D006393 1.3e-22 110.2 134 48.5
SGA_v2.0_scaffold95G28834 Striga asiatica HOM05D000509 ORTHO05D006393 1.3e-22 110.2 138 46.4
QL08p048801 Quercus lobata HOM05D000509 ORTHO05D006393 8.6e-22 107.5 115 54.8
FAN06G3105 Fragaria x ananassa HOM05D000509 ORTHO05D006393 1.9e-21 106.3 115 60.0
SalBow6G4776 Salvia bowleyana HOM05D000509 ORTHO05D006393 1.9e-21 106.3 137 48.2
FAN01G0359 Fragaria x ananassa HOM05D000509 ORTHO05D006393 3.3e-21 105.5 132 53.0
Nitab4.5_0006762g0030 Nicotiana tabacum HOM05D000509 ORTHO05D006393 1.2e-20 103.6 147 45.6
CANSAT56G2260 Cannabis sativa HOM05D000509 ORTHO05D006393 1.6e-20 103.2 134 45.5
Aqoxy2G02281 Aquilegia oxysepala HOM05D000509 ORTHO05D006393 2.1e-20 102.8 135 47.4
PGSC0003DMG400000042 Solanum tuberosum HOM05D000509 ORTHO05D006393 3.6e-20 102.1 139 47.5
COL.COLO4_20186 Corchorus olitorius HOM05D000509 ORTHO05D006393 8.0e-20 100.9 148 45.9
AT3G61370 Arabidopsis thaliana HOM05D000509 ORTHO05D006393 1.0e-19 100.5 118 50.0
Cc02_g38030 Coffea canephora HOM05D000509 ORTHO05D006393 1.8e-19 99.8 139 44.6
unitig_0.g1262 Utricularia gibba HOM05D000509 ORTHO05D006393 1.8e-19 99.8 125 49.6
MBI17_g24691_MAGBIO Magnolia biondii HOM05D000509 ORTHO05D006393 2.3e-19 99.4 104 50.0
ECA233G2837 Erigeron canadensis HOM05D000509 ORTHO05D006393 3.1e-19 99.0 140 47.9
Rhsim07G0118400 Rhododendron simsii HOM05D000509 ORTHO05D006393 3.1e-19 99.0 118 48.3
EL10Ac8g20190 Beta vulgaris HOM05D000509 ORTHO05D006393 4.0e-19 98.6 140 45.7
Zm00001eb039300 Zea mays HOM05D000509 ORTHO05D006393 4.0e-19 98.6 131 46.6
EL10Ac4g09051 Beta vulgaris HOM05D000509 ORTHO05D006393 5.2e-19 98.2 140 46.4
A09p53420 Brassica napus HOM05D000509 ORTHO05D006393 5.2e-19 98.2 84 63.1
C08p36230 Brassica napus HOM05D000509 ORTHO05D006393 5.2e-19 98.2 101 56.4
BolC8t51205H Brassica oleracea HOM05D000509 ORTHO05D006393 5.2e-19 98.2 101 56.4
BraA09t40768Z Brassica rapa HOM05D000509 ORTHO05D006393 5.2e-19 98.2 84 63.1
Hund14886 Selenicereus undatus HOM05D000509 ORTHO05D006393 1.5e-18 96.7 141 46.1
THA.LOC104798540 Tarenaya hassleriana HOM05D000509 ORTHO05D006393 1.5e-18 96.7 119 48.7
Eucgr.L01454 Eucalyptus grandis HOM05D000509 ORTHO05D006393 2.0e-18 96.3 105 51.4
Solyc01g094630.3 Solanum lycopersicum HOM05D000509 ORTHO05D006393 3.4e-18 95.5 136 43.4
Ah.04g163760 Amaranthus hybridus HOM05D000509 ORTHO05D006393 4.4e-18 95.1 139 44.6
Aa31LG1G27330 Aethionema arabicum HOM05D000509 ORTHO05D006393 9.8e-18 94.0 84 59.5
Medtr8g095650 Medicago truncatula HOM05D000509 ORTHO05D006393 9.8e-18 94.0 95 61.1
CARHR171710 Cardamine hirsuta HOM05D000509 ORTHO05D006393 2.2e-17 92.8 84 58.3
QL10p007195 Quercus lobata HOM05D000509 ORTHO05D006393 3.7e-17 92.0 79 62.0
Sopen01g038440 Solanum pennellii HOM05D000509 ORTHO05D006393 4.9e-17 91.7 136 42.6
Thhalv10006311m.g Eutrema salsugineum HOM05D000509 ORTHO05D006393 1.1e-16 90.5 84 57.1
vmacro20943 Vaccinium macrocarpon HOM05D000509 ORTHO05D006393 2.4e-16 89.4 117 48.7
THA.LOC104820589 Tarenaya hassleriana HOM05D000509 ORTHO05D006393 5.4e-16 88.2 137 44.5
Sp5g02030 Schrenkiella parvula HOM05D000509 ORTHO05D006393 1.2e-15 87.0 91 53.8
Lsat_1_v5_gn_8_97941 Lactuca sativa HOM05D002211 ORTHO05D002206 1.6e-15 86.7 122 45.1
AUR62004883 Chenopodium quinoa HOM05D000509 ORTHO05D006393 2.0e-15 86.3 136 39.7
HPP92_020794 Vanilla planifolia HOM05D000509 ORTHO05D006393 2.7e-15 85.9 126 42.1
AL5G43630 Arabidopsis lyrata HOM05D000509 ORTHO05D006393 4.6e-15 85.1 118 44.9
A04p01140 Brassica napus HOM05D000509 ORTHO05D006393 6.0e-15 84.7 103 50.5
BraA04t15830Z Brassica rapa HOM05D000509 ORTHO05D006393 6.0e-15 84.7 103 50.5
Carub.0005s2804 Capsella rubella HOM05D000509 ORTHO05D006393 1.3e-14 83.6 66 65.2
Os08g0559700 Oryza sativa ssp. japonica HOM05D000509 ORTHO05D006393 1.3e-14 83.6 115 46.1
Ah.12g064210 Amaranthus hybridus HOM05D000509 ORTHO05D006393 2.3e-14 82.8 107 46.7
GSVIVG01003391001 Vitis vinifera HOM05D000509 ORTHO05D006393 5.0e-14 81.6 108 48.1
AT4G07940 Arabidopsis thaliana HOM05D000509 ORTHO05D006393 8.6e-14 80.9 118 44.1
AL1G53560 Arabidopsis lyrata HOM05D000509 ORTHO05D006393 1.1e-13 80.5 66 63.6
BcaC07g40634 Brassica carinata HOM05D000509 ORTHO05D006393 2.5e-13 79.3 80 58.8
Migut.B01755 Erythranthe guttata HOM05D000509 ORTHO05D006393 3.3e-13 79.0 115 42.6
SEGI_38599 Sequoiadendron giganteum HOM05D000509 ORTHO05D006393 3.3e-13 79.0 151 37.7
QL11p053603 Quercus lobata HOM05D000509 ORTHO05D006393 4.3e-13 78.6 72 59.7
CDE09G0401 Ceratophyllum demersum HOM05D000509 ORTHO05D006393 1.2e-12 77.0 125 39.2
Sed0001004 Sechium edule HOM05D000509 ORTHO05D006393 1.2e-12 77.0 139 35.3
BcaC02g10220 Brassica carinata HOM05D000509 ORTHO05D006393 2.1e-12 76.3 87 54.0
C04p31370 Brassica napus HOM05D000509 ORTHO05D006393 2.1e-12 76.3 87 54.0
Aa31LG5G5170 Aethionema arabicum HOM05D000509 ORTHO05D006393 2.8e-12 75.9 100 44.0
PSO782G0796 Papaver somniferum HOM05D000509 ORTHO05D006393 2.8e-12 75.9 139 38.1
AUR62001076 Chenopodium quinoa HOM05D000509 ORTHO05D006393 3.6e-12 75.5 159 33.3
DCAR_015993 Daucus carota HOM05D000509 ORTHO05D006393 4.7e-12 75.1 92 52.2
CsaV3_6G000560 Cucumis sativus L. HOM05D000509 ORTHO05D006393 8.1e-12 74.3 140 35.7
PSO478G1119 Papaver somniferum HOM05D000509 ORTHO05D006393 8.1e-12 74.3 86 47.7
MELO3C021209.2 Cucumis melo HOM05D000509 ORTHO05D006393 1.1e-11 73.9 139 35.3
ATR0680G086 Amborella trichopoda HOM05D000509 ORTHO05D006393 3.1e-11 72.4 97 46.4
BolC4t24686H Brassica oleracea HOM05D000509 ORTHO05D006393 6.8e-11 71.2 87 50.6
PSO063G2671 Papaver somniferum HOM05D000509 ORTHO05D006393 5.8e-10 68.2 126 35.7
PSO339G4277 Papaver somniferum HOM05D000509 ORTHO05D006393 1.3e-09 67.0 128 38.3
HanXRQChr09g0257651 Helianthus annuus HOM05D000509 ORTHO05D006393 3.7e-09 65.5 108 42.6
Potri.006G202400 Populus trichocarpa HOM05D000509 ORTHO05D006393 3.7e-09 65.5 89 48.3
Peaxi162Scf00020g00322 Petunia axillaris HOM05D000509 ORTHO05D006393 8.3e-09 64.3 79 49.4
Atru.chr5.498 Acer truncatum HOM05D000509 ORTHO05D006393 4.6e-07 58.5 54 61.1
ClCG06G003680 Citrullus lanatus HOM05D000509 ORTHO05D006393 6.0e-07 58.2 120 33.3


User provided reference genes

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