Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G232300 Glycine max HOM05D003351 ORTHO05D003806 3.2e-46 188.0 89 100.0
Glyma.18G232000 Glycine max HOM05D003351 ORTHO05D003806 4.8e-42 174.1 87 93.1
Glyma.09G260200 Glycine max HOM05D003351 ORTHO05D003806 1.4e-41 172.6 87 92.0
Phvul.008G065700 Phaseolus vulgaris HOM05D003351 ORTHO05D003806 3.8e-39 164.5 87 89.7
Lj1g0000541 Lotus japonicus HOM05D003351 ORTHO05D003806 3.9e-36 154.5 87 85.1
Lalb_Chr19g0126951 Lupinus albus HOM05D003351 ORTHO05D003806 6.3e-34 147.1 86 81.4
arahy.Tifrunner.gnm1.ann1.M409IX Arachis hypogaea HOM05D000404 ORTHO05D002003 4.1e-33 144.4 88 79.5
RcHm_v2.0_Chr1g0355121 Rosa chinensis HOM05D003351 ORTHO05D003806 2.0e-32 142.1 87 77.0
arahy.Tifrunner.gnm1.ann1.UANN5Y Arachis hypogaea HOM05D003351 ORTHO05D003806 2.6e-32 141.7 85 76.5
Prupe.2G169700 Prunus persica HOM05D003351 ORTHO05D003806 3.5e-32 141.4 87 74.7
FAN01G2146 Fragaria x ananassa HOM05D003351 ORTHO05D003806 4.5e-32 141.0 87 75.9
FAN10G4309 Fragaria x ananassa HOM05D003351 ORTHO05D003806 5.9e-32 140.6 87 74.7
Ca_23637_v3 Cicer arietinum L. HOM05D003351 ORTHO05D003806 1.0e-31 139.8 85 74.1
Ca_27001_v3 Cicer arietinum L. HOM05D003351 ORTHO05D003806 1.0e-31 139.8 87 74.7
Medtr7g077400 Medicago truncatula HOM05D003351 ORTHO05D003806 1.0e-31 139.8 87 75.9
MD01G1058500 Malus domestica HOM05D003351 ORTHO05D003806 1.3e-31 139.4 87 73.6
Psat0s3577g0160 Pisum sativum HOM05D003351 ORTHO05D003806 1.7e-31 139.0 87 73.6
TPR.G37800 Trifolium pratense HOM05D003351 ORTHO05D003806 1.7e-31 139.0 88 76.1
FvH4_7g14192 Fragaria vesca HOM05D003351 ORTHO05D003806 2.9e-31 138.3 87 74.7
FAN06G3044 Fragaria x ananassa HOM05D003351 ORTHO05D003806 2.9e-31 138.3 87 74.7
Phvul.010G098200 Phaseolus vulgaris HOM05D003351 ORTHO05D003806 5.0e-31 137.5 87 74.7
Psat4g154520 Pisum sativum HOM05D003351 ORTHO05D003806 1.5e-30 136.0 85 74.1
TPR.G14856 Trifolium pratense HOM05D003351 ORTHO05D003806 1.9e-30 135.6 85 72.9
Lj9A583T62 Lonicera japonica HOM05D003351 ORTHO05D003806 2.5e-30 135.2 87 71.3
MD01G1058600 Malus domestica HOM05D003351 ORTHO05D003806 2.5e-30 135.2 87 72.4
Medtr8g030920 Medicago truncatula HOM05D003351 ORTHO05D003806 2.5e-30 135.2 85 72.9
arahy.Tifrunner.gnm1.ann1.74NP28 Arachis hypogaea HOM05D003351 ORTHO05D003806 4.2e-30 134.4 88 69.3
Glyma.03G009800 Glycine max HOM05D003351 ORTHO05D003806 5.5e-30 134.0 87 71.3
arahy.Tifrunner.gnm1.ann1.CI504D Arachis hypogaea HOM05D003351 ORTHO05D003806 9.4e-30 133.3 88 68.2
Lalb_Chr17g0339681 Lupinus albus HOM05D003351 ORTHO05D003806 9.4e-30 133.3 87 70.1
VMungo0331G1844 Vigna mungo HOM05D003351 ORTHO05D003806 9.4e-30 133.3 87 72.4
Nn6g33439 Nelumbo nucifera HOM05D003351 ORTHO05D003806 1.2e-29 132.9 85 70.6
Lalb_Chr19g0126941 Lupinus albus HOM05D003351 ORTHO05D003806 1.6e-29 132.5 81 76.5
Psat0s3577g0120 Pisum sativum HOM05D003351 ORTHO05D003806 1.6e-29 132.5 88 70.5
TPR.G40156 Trifolium pratense HOM05D003351 ORTHO05D003806 1.6e-29 132.5 88 69.3
Glyma.07G071300 Glycine max HOM05D003351 ORTHO05D003806 6.1e-29 130.6 87 67.8
Thecc.01G360000 Theobroma cacao HOM05D003351 ORTHO05D003806 6.1e-29 130.6 85 70.6
Haze_15493 Corylus avellana HOM05D003351 ORTHO05D003806 8.0e-29 130.2 84 72.6
Lj3g0018331 Lotus japonicus HOM05D003351 ORTHO05D003806 8.0e-29 130.2 86 69.8
FAN06G4684 Fragaria x ananassa HOM05D003351 ORTHO05D003806 1.0e-28 129.8 92 69.6
CSS0020727 Camellia sinensis var. sinensis HOM05D003351 ORTHO05D003806 1.8e-28 129.0 87 67.8
Lsat_1_v5_gn_7_4420 Lactuca sativa HOM05D003351 ORTHO05D003806 3.0e-28 128.3 84 71.4
QL08p048978 Quercus lobata HOM05D003351 ORTHO05D003806 4.0e-28 127.9 84 69.0
Sed0024794 Sechium edule HOM05D003351 ORTHO05D003806 5.2e-28 127.5 87 63.2
Solyc01g094550.3 Solanum lycopersicum HOM05D003351 ORTHO05D003806 1.5e-27 125.9 87 64.4
Sopen01g038360 Solanum pennellii HOM05D003351 ORTHO05D003806 1.5e-27 125.9 87 64.4
CANSAT56G4221 Cannabis sativa HOM05D003351 ORTHO05D003806 2.0e-27 125.6 88 65.9
HanXRQChr04g0121471 Helianthus annuus HOM05D003351 ORTHO05D003806 2.0e-27 125.6 86 66.3
COL.COLO4_12706 Corchorus olitorius HOM05D003351 ORTHO05D003806 2.6e-27 125.2 85 67.1
GSVIVG01026913001 Vitis vinifera HOM05D003351 ORTHO05D003806 2.6e-27 125.2 87 66.7
TWI59G0062 Tripterygium wilfordii HOM05D003351 ORTHO05D003806 3.3e-27 124.8 86 68.6
CDE11G0862 Ceratophyllum demersum HOM05D003351 ORTHO05D003806 4.4e-27 124.4 83 66.3
Manes.05G035200 Manihot esculenta HOM05D003351 ORTHO05D003806 4.4e-27 124.4 87 65.5
QL08p048955 Quercus lobata HOM05D003351 ORTHO05D003806 4.4e-27 124.4 84 67.9
Cc02_g37920 Coffea canephora HOM05D003351 ORTHO05D003806 5.7e-27 124.0 82 67.1
Gohir.D11G092700 Gossypium hirsutum HOM05D003351 ORTHO05D003806 5.7e-27 124.0 88 64.8
Sed0019127 Sechium edule HOM05D003351 ORTHO05D003806 5.7e-27 124.0 87 60.9
Gohir.A11G088400 Gossypium hirsutum HOM05D003351 ORTHO05D003806 7.5e-27 123.6 88 64.8
Duzib138G1725 Durio zibethinus HOM05D003351 ORTHO05D003806 1.3e-26 122.9 82 69.5
CiPaw.01G060600 Carya illinoinensis HOM05D003351 ORTHO05D003806 2.2e-26 122.1 86 64.0
Potri.014G083300 Populus trichocarpa HOM05D003351 ORTHO05D003806 2.2e-26 122.1 84 63.1
Duzib133G0362 Durio zibethinus HOM05D003351 ORTHO05D003806 3.7e-26 121.3 85 67.1
Psat0s3832g0080 Pisum sativum HOM05D003351 ORTHO05D003806 3.7e-26 121.3 87 66.7
PGSC0003DMG400000166 Solanum tuberosum HOM05D003351 ORTHO05D003806 3.7e-26 121.3 87 63.2
ECA236G4888 Erigeron canadensis HOM05D003351 ORTHO05D003806 4.8e-26 120.9 82 68.3
Gorai.007G099000 Gossypium raimondii HOM05D003351 ORTHO05D003806 4.8e-26 120.9 83 66.3
Migut.N01442 Erythranthe guttata HOM05D003351 ORTHO05D003806 6.3e-26 120.6 82 68.3
Manes.01G257800 Manihot esculenta HOM05D003351 ORTHO05D003806 6.3e-26 120.6 87 65.5
Atru.chr5.459 Acer truncatum HOM05D003351 ORTHO05D003806 8.3e-26 120.2 87 63.2
Nitab4.5_0005277g0030 Nicotiana tabacum HOM05D003351 ORTHO05D003806 8.3e-26 120.2 80 66.2
Solyc01g094530.4 Solanum lycopersicum HOM05D003351 ORTHO05D003806 8.3e-26 120.2 87 63.2
MSTRG.4857 Avicennia marina HOM05D003351 ORTHO05D003806 1.1e-25 119.8 87 62.1
ClCG05G001560 Citrullus lanatus HOM05D003351 ORTHO05D003806 1.1e-25 119.8 87 65.5
DCAR_025188 Daucus carota HOM05D003351 ORTHO05D003806 1.1e-25 119.8 87 64.4
SalBow5G0930 Salvia bowleyana HOM05D003351 ORTHO05D003806 1.1e-25 119.8 87 60.9
SalBow5G3927 Salvia bowleyana HOM05D003351 ORTHO05D003806 1.1e-25 119.8 87 60.9
Sabra14G0060600 Salix brachista HOM05D003351 ORTHO05D003806 1.8e-25 119.0 80 63.8
Ciclev10020242m.g Citrus clementina HOM05D003351 ORTHO05D003806 2.4e-25 118.6 90 62.2
HanXRQChr06g0170081 Helianthus annuus HOM05D003351 ORTHO05D003806 2.4e-25 118.6 86 62.8
CiPaw.01G060500 Carya illinoinensis HOM05D003351 ORTHO05D003806 4.1e-25 117.9 86 62.8
HPP92_008506 Vanilla planifolia HOM05D003351 ORTHO05D003806 4.1e-25 117.9 86 62.8
PSO782G5283 Papaver somniferum HOM05D003351 ORTHO05D003806 7.0e-25 117.1 87 62.1
Sopen01g038340 Solanum pennellii HOM05D003351 ORTHO05D003806 7.0e-25 117.1 87 62.1
ATR0680G356 Amborella trichopoda HOM05D003351 ORTHO05D003806 1.2e-24 116.3 88 59.1
THA.LOC104814102 Tarenaya hassleriana HOM05D003351 ORTHO05D003806 1.2e-24 116.3 87 63.2
Aqoxy7G00326 Aquilegia oxysepala HOM05D003351 ORTHO05D003806 1.6e-24 115.9 82 61.0
AUR62004348 Chenopodium quinoa HOM05D003351 ORTHO05D003806 1.6e-24 115.9 87 64.4
MELO3C006113.2 Cucumis melo HOM05D003351 ORTHO05D003806 1.6e-24 115.9 85 64.7
CsaV3_3G008950 Cucumis sativus L. HOM05D003351 ORTHO05D003806 1.6e-24 115.9 85 64.7
Actinidia33422 Actinidia chinensis HOM05D003351 ORTHO05D003806 3.5e-24 114.8 87 64.4
EL10Ac1g00424 Beta vulgaris HOM05D003351 ORTHO05D003806 3.5e-24 114.8 87 63.2
PSO478G5134 Papaver somniferum HOM05D003351 ORTHO05D003806 3.5e-24 114.8 87 60.9
SGA_v2.0_scaffold43G16419 Striga asiatica HOM05D003351 ORTHO05D003806 7.7e-24 113.6 80 66.2
Dinv43809 Davidia involucrata HOM05D003351 ORTHO05D003806 1.0e-23 113.2 87 62.1
vmacro23203 Vaccinium macrocarpon HOM05D003351 ORTHO05D003806 2.2e-23 112.1 87 62.1
Lj7A514T27 Lonicera japonica HOM05D003351 ORTHO05D003806 2.9e-23 111.7 87 63.2
Thhalv10007689m.g Eutrema salsugineum HOM05D003351 ORTHO05D003806 1.1e-22 109.8 87 59.8
DCAR_015970 Daucus carota HOM05D003351 ORTHO05D003806 1.5e-22 109.4 87 59.8
Aa31LG1G11070 Aethionema arabicum HOM05D003351 ORTHO05D003806 1.9e-22 109.0 87 62.1
Ah.05g180660 Amaranthus hybridus HOM05D003351 ORTHO05D003806 1.9e-22 109.0 87 59.8
Os04g0558400 Oryza sativa ssp. japonica HOM05D003351 ORTHO05D003806 3.2e-22 108.2 87 55.2
BraA10t42310Z Brassica rapa HOM05D003351 ORTHO05D003806 7.2e-22 107.1 87 59.8
PSO478G3804 Papaver somniferum HOM05D003351 ORTHO05D003806 7.2e-22 107.1 87 58.6
Eucgr.E00141 Eucalyptus grandis HOM05D003351 ORTHO05D003806 1.6e-21 105.9 87 56.3
Carub.0001s0050 Capsella rubella HOM05D003351 ORTHO05D003806 2.1e-21 105.5 82 62.2
PSO782G0254 Papaver somniferum HOM05D003351 ORTHO05D003806 2.1e-21 105.5 87 57.5
Hund16926 Selenicereus undatus HOM05D003351 ORTHO05D003806 2.7e-21 105.1 87 57.5
Sc23g0002940 Simmondsia chinensis HOM05D003351 ORTHO05D003806 3.6e-21 104.8 87 56.3
Sp1g00600 Schrenkiella parvula HOM05D003351 ORTHO05D003806 4.7e-21 104.4 87 57.5
SEGI_17243 Sequoiadendron giganteum HOM05D003351 ORTHO05D003806 6.1e-21 104.0 86 57.0
AL1G10650 Arabidopsis lyrata HOM05D003351 ORTHO05D003806 1.0e-20 103.2 87 58.6
PSO478G2412 Papaver somniferum HOM05D003351 ORTHO05D003806 1.0e-20 103.2 88 58.0
A10p00320 Brassica napus HOM05D003351 ORTHO05D003806 1.4e-20 102.8 82 59.8
AT1G01710 Arabidopsis thaliana HOM05D003351 ORTHO05D003806 3.0e-20 101.7 87 58.6
BolC5t28825H Brassica oleracea HOM05D003351 ORTHO05D003806 4.0e-20 101.3 82 58.5
Aa31LG5G470 Aethionema arabicum HOM05D003351 ORTHO05D003806 5.2e-20 100.9 87 57.5
CARHR248670 Cardamine hirsuta HOM05D003351 ORTHO05D003806 1.2e-19 99.8 87 54.0
C05p00330 Brassica napus HOM05D003351 ORTHO05D003806 2.0e-19 99.0 82 57.3
Thhalv10029128m.g Eutrema salsugineum HOM05D003351 ORTHO05D003806 2.0e-19 99.0 91 56.0
PSO063G6511 Papaver somniferum HOM05D003351 ORTHO05D003806 5.7e-19 97.4 90 54.4
AL6G52960 Arabidopsis lyrata HOM05D003351 ORTHO05D003806 9.8e-19 96.7 87 54.0
Aa31LG5G460 Aethionema arabicum HOM05D003351 ORTHO05D003806 1.7e-18 95.9 82 58.5
DCAR_006927 Daucus carota HOM05D003351 ORTHO05D003806 6.3e-18 94.0 87 58.6
PSO782G2636 Papaver somniferum HOM05D003351 ORTHO05D003806 2.4e-17 92.0 80 53.8
Hund27282 Selenicereus undatus HOM05D003351 ORTHO05D003806 3.1e-17 91.7 80 53.8
Sp6g00550 Schrenkiella parvula HOM05D003351 ORTHO05D003806 7.0e-17 90.5 91 50.5
HanXRQChr06g0170071 Helianthus annuus HOM05D003351 ORTHO05D003806 3.5e-16 88.2 84 51.2
Lsat_1_v5_gn_7_4460 Lactuca sativa HOM05D003351 ORTHO05D003806 1.7e-15 85.9 82 50.0
A03p32150 Brassica napus HOM05D003351 ORTHO05D003806 2.9e-15 85.1 91 48.4
BcaB01g02197 Brassica carinata HOM05D003351 ORTHO05D003806 3.8e-15 84.7 91 48.4
BcaC03g16040 Brassica carinata HOM05D003351 ORTHO05D003806 8.6e-15 83.6 91 49.5
BcaC01g06871 Brassica carinata HOM05D003351 ORTHO05D003806 1.1e-14 83.2 91 47.3
BolC2t09816H Brassica oleracea HOM05D003351 ORTHO05D003806 1.1e-14 83.2 91 48.4
BolC3t16188H Brassica oleracea HOM05D003351 ORTHO05D003806 1.1e-14 83.2 91 47.3
BraA03t12385Z Brassica rapa HOM05D003351 ORTHO05D003806 1.1e-14 83.2 91 48.4
C02p38000 Brassica napus HOM05D003351 ORTHO05D003806 1.9e-14 82.4 87 50.6
BraA02t07405Z Brassica rapa HOM05D003351 ORTHO05D003806 1.9e-14 82.4 91 48.4
Pp3c14_7450 Physcomitrium patens HOM05D003351 ORTHO05D003806 4.2e-14 81.3 84 48.8
BcaNung05354 Brassica carinata HOM05D003351 ORTHO05D003806 5.5e-14 80.9 86 51.2
C03p39170 Brassica napus HOM05D003351 ORTHO05D003806 9.5e-14 80.1 86 47.7
Peaxi162Scf00020g00237 Petunia axillaris HOM05D003351 ORTHO05D003806 2.8e-13 78.6 47 70.2
SMO147G0381 Selaginella moellendorffii HOM05D003351 ORTHO05D003806 4.7e-13 77.8 84 46.4
CAN.G78.59 Capsicum annuum HOM05D003351 ORTHO05D003806 2.3e-12 75.5 58 56.9
Pp3c12_25760 Physcomitrium patens HOM05D003351 ORTHO05D003806 1.2e-11 73.2 80 42.5
BcaC04g24162 Brassica carinata HOM05D003351 ORTHO05D003806 2.0e-11 72.4 81 45.7
HanXRQChr04g0121591 Helianthus annuus HOM05D003351 ORTHO05D003806 2.6e-11 72.0 50 66.0
BcaB01g02160 Brassica carinata HOM05D003351 ORTHO05D003806 1.3e-10 69.7 88 44.3
AUR62022554 Chenopodium quinoa HOM05D003351 ORTHO05D003806 1.7e-10 69.3 51 62.7
Rhsim13G0014400 Rhododendron simsii HOM05D003351 ORTHO05D003806 2.8e-10 68.6 46 69.6
Pp3c10_19190 Physcomitrium patens HOM05D003351 ORTHO05D003806 1.4e-09 66.2 80 42.5
Mapoly0016s0008 Marchantia polymorpha HOM05D003351 ORTHO05D003806 1.8e-09 65.9 82 37.8
BcaB03g13607 Brassica carinata HOM05D003351 ORTHO05D003806 5.9e-08 60.8 54 53.7
AT4G00520 Arabidopsis thaliana HOM05D003351 ORTHO05D003806 5.0e-07 57.8 49 55.1
A02p24120 Brassica napus HOM05D003351 ORTHO05D003806 5.6e-06 54.3 138 30.4
CBR_g48193 Chara braunii HOM05D001353 ORTHO05D013162 5.6e-06 54.3 85 36.5


User provided reference genes

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