Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G232100 Glycine max HOM05D003351 ORTHO05D003806 5.8e-36 153.7 76 100.0
Glyma.18G232000 Glycine max HOM05D003351 ORTHO05D003806 3.3e-31 137.9 75 89.3
Phvul.008G065700 Phaseolus vulgaris HOM05D003351 ORTHO05D003806 6.2e-30 133.7 76 88.2
arahy.Tifrunner.gnm1.ann1.M409IX Arachis hypogaea HOM05D000404 ORTHO05D002003 7.5e-28 126.7 75 82.7
arahy.Tifrunner.gnm1.ann1.UANN5Y Arachis hypogaea HOM05D003351 ORTHO05D003806 1.3e-27 125.9 75 81.3
Lj1g0000541 Lotus japonicus HOM05D003351 ORTHO05D003806 1.1e-26 122.9 76 75.0
Medtr7g077400 Medicago truncatula HOM05D003351 ORTHO05D003806 1.0e-24 116.3 76 73.7
Lalb_Chr17g0339681 Lupinus albus HOM05D003351 ORTHO05D003806 3.0e-24 114.8 77 75.3
Lalb_Chr19g0126951 Lupinus albus HOM05D003351 ORTHO05D003806 5.0e-24 114.0 76 75.0
VMungo0331G1844 Vigna mungo HOM05D003351 ORTHO05D003806 6.6e-24 113.6 75 70.7
TPR.G37800 Trifolium pratense HOM05D003351 ORTHO05D003806 1.1e-23 112.8 76 71.1
Psat0s3832g0080 Pisum sativum HOM05D003351 ORTHO05D003806 3.3e-23 111.3 76 69.7
Ca_07910_v3 Cicer arietinum L. HOM05D003351 ORTHO05D003806 4.3e-23 110.9 76 68.4
Glyma.03G009800 Glycine max HOM05D003351 ORTHO05D003806 4.3e-23 110.9 75 69.3
Glyma.07G071300 Glycine max HOM05D003351 ORTHO05D003806 5.6e-23 110.5 75 69.3
Phvul.010G098200 Phaseolus vulgaris HOM05D003351 ORTHO05D003806 1.6e-22 109.0 75 68.0
Psat0s3577g0160 Pisum sativum HOM05D003351 ORTHO05D003806 2.1e-22 108.6 76 68.4
Ca_23637_v3 Cicer arietinum L. HOM05D003351 ORTHO05D003806 2.8e-22 108.2 71 67.6
Psat0s3577g0040 Pisum sativum HOM05D003351 ORTHO05D003806 2.8e-22 108.2 76 69.7
Haze_15492 Corylus avellana HOM05D003351 ORTHO05D003806 3.6e-22 107.8 76 65.8
CiPaw.01G060600 Carya illinoinensis HOM05D003351 ORTHO05D003806 6.2e-22 107.1 76 65.8
CSS0020727 Camellia sinensis var. sinensis HOM05D003351 ORTHO05D003806 1.4e-21 105.9 76 64.5
Rhsim13G0014400 Rhododendron simsii HOM05D003351 ORTHO05D003806 2.3e-21 105.1 76 64.5
TPR.G15034 Trifolium pratense HOM05D003351 ORTHO05D003806 3.1e-21 104.8 75 65.3
GSVIVG01026913001 Vitis vinifera HOM05D003351 ORTHO05D003806 4.0e-21 104.4 76 64.5
CANSAT56G4221 Cannabis sativa HOM05D003351 ORTHO05D003806 5.2e-21 104.0 63 73.0
Lalb_Chr19g0126941 Lupinus albus HOM05D003351 ORTHO05D003806 6.8e-21 103.6 70 70.0
Psat4g154520 Pisum sativum HOM05D003351 ORTHO05D003806 1.2e-20 102.8 75 64.0
Migut.N01442 Erythranthe guttata HOM05D003351 ORTHO05D003806 2.6e-20 101.7 76 63.2
Gohir.D11G092700 Gossypium hirsutum HOM05D003351 ORTHO05D003806 2.6e-20 101.7 75 64.0
Gorai.007G099000 Gossypium raimondii HOM05D003351 ORTHO05D003806 2.6e-20 101.7 75 64.0
Manes.05G035200 Manihot esculenta HOM05D003351 ORTHO05D003806 2.6e-20 101.7 76 61.8
MELO3C006113.2 Cucumis melo HOM05D003351 ORTHO05D003806 5.8e-20 100.5 76 61.8
Lsat_1_v5_gn_7_4420 Lactuca sativa HOM05D003351 ORTHO05D003806 7.5e-20 100.1 76 63.2
Medtr8g030920 Medicago truncatula HOM05D003351 ORTHO05D003806 7.5e-20 100.1 71 66.2
CsaV3_3G008950 Cucumis sativus L. HOM05D003351 ORTHO05D003806 1.3e-19 99.4 63 69.8
Duzib138G1725 Durio zibethinus HOM05D003351 ORTHO05D003806 1.3e-19 99.4 75 62.7
Peaxi162Scf00020g00237 Petunia axillaris HOM05D003351 ORTHO05D003806 1.7e-19 99.0 61 72.1
COL.COLO4_12706 Corchorus olitorius HOM05D003351 ORTHO05D003806 2.2e-19 98.6 75 58.7
Glyma.09G260200 Glycine max HOM05D003351 ORTHO05D003806 2.2e-19 98.6 55 78.2
Gohir.A11G088400 Gossypium hirsutum HOM05D003351 ORTHO05D003806 2.2e-19 98.6 75 62.7
Aqoxy7G00326 Aquilegia oxysepala HOM05D003351 ORTHO05D003806 2.9e-19 98.2 76 60.5
MSTRG.4857 Avicennia marina HOM05D003351 ORTHO05D003806 2.9e-19 98.2 76 57.9
HanXRQChr06g0170081 Helianthus annuus HOM05D003351 ORTHO05D003806 2.9e-19 98.2 76 57.9
Thecc.01G360000 Theobroma cacao HOM05D003351 ORTHO05D003806 3.7e-19 97.8 75 60.0
CAN.G78.58 Capsicum annuum HOM05D003351 ORTHO05D003806 4.9e-19 97.4 62 69.4
CARHR000630 Cardamine hirsuta HOM05D003351 ORTHO05D003806 4.9e-19 97.4 75 60.0
DCAR_015970 Daucus carota HOM05D003351 ORTHO05D003806 4.9e-19 97.4 76 59.2
Dinv43809 Davidia involucrata HOM05D003351 ORTHO05D003806 4.9e-19 97.4 76 59.2
Actinidia33422 Actinidia chinensis HOM05D003351 ORTHO05D003806 6.4e-19 97.1 76 57.9
Duzib133G0362 Durio zibethinus HOM05D003351 ORTHO05D003806 6.4e-19 97.1 75 61.3
Solyc01g094530.4 Solanum lycopersicum HOM05D003351 ORTHO05D003806 6.4e-19 97.1 61 70.5
Sopen01g038340 Solanum pennellii HOM05D003351 ORTHO05D003806 6.4e-19 97.1 61 70.5
PGSC0003DMG400000037 Solanum tuberosum HOM05D003351 ORTHO05D003806 6.4e-19 97.1 57 75.4
DCAR_025188 Daucus carota HOM05D003351 ORTHO05D003806 8.3e-19 96.7 76 59.2
PGSC0003DMG400000166 Solanum tuberosum HOM05D003351 ORTHO05D003806 8.3e-19 96.7 61 70.5
unitig_22.g6719 Utricularia gibba HOM05D003351 ORTHO05D003806 8.3e-19 96.7 76 60.5
BcaB03g13607 Brassica carinata HOM05D003351 ORTHO05D003806 1.1e-18 96.3 76 56.6
BolC5t28825H Brassica oleracea HOM05D003351 ORTHO05D003806 1.1e-18 96.3 76 56.6
ECA236G4888 Erigeron canadensis HOM05D003351 ORTHO05D003806 1.1e-18 96.3 63 63.5
Nitab4.5_0005277g0030 Nicotiana tabacum HOM05D003351 ORTHO05D003806 1.1e-18 96.3 61 68.9
Sed0019127 Sechium edule HOM05D003351 ORTHO05D003806 1.1e-18 96.3 76 57.9
Carub.0001s0050 Capsella rubella HOM05D003351 ORTHO05D003806 1.4e-18 95.9 76 55.3
Carub.0006s3675 Capsella rubella HOM05D003351 ORTHO05D003806 1.4e-18 95.9 76 55.3
Thhalv10007689m.g Eutrema salsugineum HOM05D003351 ORTHO05D003806 1.4e-18 95.9 76 56.6
Sed0024794 Sechium edule HOM05D003351 ORTHO05D003806 1.4e-18 95.9 63 65.1
AT4G00520 Arabidopsis thaliana HOM05D003351 ORTHO05D003806 1.9e-18 95.5 76 53.9
BcaC03g16040 Brassica carinata HOM05D003351 ORTHO05D003806 1.9e-18 95.5 76 57.9
Solyc01g094550.3 Solanum lycopersicum HOM05D003351 ORTHO05D003806 1.9e-18 95.5 57 73.7
Sopen01g038360 Solanum pennellii HOM05D003351 ORTHO05D003806 1.9e-18 95.5 57 73.7
A02p24120 Brassica napus HOM05D003351 ORTHO05D003806 2.4e-18 95.1 76 57.9
BraA02t07405Z Brassica rapa HOM05D003351 ORTHO05D003806 2.4e-18 95.1 76 57.9
Nitab4.5_0008002g0030 Nicotiana tabacum HOM05D003351 ORTHO05D003806 2.4e-18 95.1 61 67.2
Potri.014G083300 Populus trichocarpa HOM05D003351 ORTHO05D003806 2.4e-18 95.1 70 60.0
AL1G10650 Arabidopsis lyrata HOM05D003351 ORTHO05D003806 4.1e-18 94.4 76 53.9
C02p38000 Brassica napus HOM05D003351 ORTHO05D003806 4.1e-18 94.4 76 57.9
BolC2t09816H Brassica oleracea HOM05D003351 ORTHO05D003806 4.1e-18 94.4 76 57.9
Sp1g00600 Schrenkiella parvula HOM05D003351 ORTHO05D003806 4.1e-18 94.4 76 55.3
AT1G01710 Arabidopsis thaliana HOM05D003351 ORTHO05D003806 5.4e-18 94.0 63 63.5
Cc02_g37920 Coffea canephora HOM05D003351 ORTHO05D003806 5.4e-18 94.0 77 59.7
FvH4_7g14192 Fragaria vesca HOM05D003351 ORTHO05D003806 5.4e-18 94.0 75 64.0
FAN06G3044 Fragaria x ananassa HOM05D003351 ORTHO05D003806 5.4e-18 94.0 75 64.0
FAN06G4684 Fragaria x ananassa HOM05D003351 ORTHO05D003806 5.4e-18 94.0 75 64.0
Oeu037304.1 Olea europaea HOM05D003351 ORTHO05D003806 7.1e-18 93.6 71 57.7
Oeu037305.1 Olea europaea HOM05D003351 ORTHO05D003806 7.1e-18 93.6 71 57.7
PSO478G5134 Papaver somniferum HOM05D003351 ORTHO05D003806 7.1e-18 93.6 76 53.9
THA.LOC104814102 Tarenaya hassleriana HOM05D003351 ORTHO05D003806 7.1e-18 93.6 63 63.5
Aa31LG1G11070 Aethionema arabicum HOM05D003351 ORTHO05D003806 9.2e-18 93.2 76 55.3
Aa31LG5G470 Aethionema arabicum HOM05D003351 ORTHO05D003806 9.2e-18 93.2 71 57.7
Eucgr.E00141 Eucalyptus grandis HOM05D003351 ORTHO05D003806 9.2e-18 93.2 76 56.6
HanXRQChr04g0121601 Helianthus annuus HOM05D003351 ORTHO05D003806 9.2e-18 93.2 76 56.6
RcHm_v2.0_Chr1g0355121 Rosa chinensis HOM05D003351 ORTHO05D003806 9.2e-18 93.2 75 64.0
Sp6g00550 Schrenkiella parvula HOM05D003351 ORTHO05D003806 9.2e-18 93.2 76 53.9
BcaB01g02157 Brassica carinata HOM05D003351 ORTHO05D003806 1.2e-17 92.8 76 53.9
BcaC01g06871 Brassica carinata HOM05D003351 ORTHO05D003806 1.2e-17 92.8 76 53.9
BcaNung05354 Brassica carinata HOM05D003351 ORTHO05D003806 1.2e-17 92.8 76 53.9
A03p32150 Brassica napus HOM05D003351 ORTHO05D003806 1.2e-17 92.8 76 53.9
C03p39170 Brassica napus HOM05D003351 ORTHO05D003806 1.2e-17 92.8 76 53.9
BolC3t16188H Brassica oleracea HOM05D003351 ORTHO05D003806 1.2e-17 92.8 76 53.9
BraA03t12385Z Brassica rapa HOM05D003351 ORTHO05D003806 1.2e-17 92.8 76 53.9
Cpa.g.sc18.250 Carica papaya HOM05D003351 ORTHO05D003806 1.2e-17 92.8 75 56.0
PSO478G2412 Papaver somniferum HOM05D003351 ORTHO05D003806 1.2e-17 92.8 76 53.9
TWI59G0062 Tripterygium wilfordii HOM05D003351 ORTHO05D003806 1.6e-17 92.4 76 55.3
Ciclev10020242m.g Citrus clementina HOM05D003351 ORTHO05D003806 2.1e-17 92.0 61 65.6
Nn6g33439 Nelumbo nucifera HOM05D003351 ORTHO05D003806 2.1e-17 92.0 76 53.9
PSO782G5283 Papaver somniferum HOM05D003351 ORTHO05D003806 2.1e-17 92.0 76 52.6
BcaB01g02197 Brassica carinata HOM05D003351 ORTHO05D003806 3.5e-17 91.3 71 57.7
BraA10t42310Z Brassica rapa HOM05D003351 ORTHO05D003806 3.5e-17 91.3 76 53.9
Psat0s3832g0040 Pisum sativum HOM05D003351 ORTHO05D003806 3.5e-17 91.3 112 47.3
Sabra14G0060600 Salix brachista HOM05D003351 ORTHO05D003806 3.5e-17 91.3 70 57.1
CAN.G78.57 Capsicum annuum HOM05D003351 ORTHO05D003806 7.8e-17 90.1 61 65.6
CiPaw.01G060400 Carya illinoinensis HOM05D003351 ORTHO05D003806 7.8e-17 90.1 67 59.7
MD01G1058600 Malus domestica HOM05D003351 ORTHO05D003806 7.8e-17 90.1 64 59.4
SGA_v2.0_scaffold43G16419 Striga asiatica HOM05D003351 ORTHO05D003806 7.8e-17 90.1 62 64.5
ClCG05G001560 Citrullus lanatus HOM05D003351 ORTHO05D003806 1.0e-16 89.7 80 57.5
SalBow5G0930 Salvia bowleyana HOM05D003351 ORTHO05D003806 1.0e-16 89.7 76 53.9
SalBow5G3927 Salvia bowleyana HOM05D003351 ORTHO05D003806 1.0e-16 89.7 76 53.9
CDE11G0862 Ceratophyllum demersum HOM05D003351 ORTHO05D003806 1.3e-16 89.4 76 50.0
Atru.chr5.459 Acer truncatum HOM05D003351 ORTHO05D003806 2.3e-16 88.6 75 53.3
Aa31LG5G460 Aethionema arabicum HOM05D003351 ORTHO05D003806 3.0e-16 88.2 76 52.6
Sc23g0002940 Simmondsia chinensis HOM05D003351 ORTHO05D003806 5.1e-16 87.4 73 52.1
ATR0680G356 Amborella trichopoda HOM05D003351 ORTHO05D003806 8.6e-16 86.7 76 50.0
Ah.05g180660 Amaranthus hybridus HOM05D003351 ORTHO05D003806 1.1e-15 86.3 73 50.7
EL10Ac1g00424 Beta vulgaris HOM05D003351 ORTHO05D003806 1.1e-15 86.3 64 57.8
QL08p048969 Quercus lobata HOM05D003351 ORTHO05D003806 1.1e-15 86.3 75 53.3
QL08p048991 Quercus lobata HOM05D003351 ORTHO05D003806 1.1e-15 86.3 75 53.3
AUR62004348 Chenopodium quinoa HOM05D003351 ORTHO05D003806 1.5e-15 85.9 73 50.7
HanXRQChr06g0170071 Helianthus annuus HOM05D003351 ORTHO05D003806 1.5e-15 85.9 59 61.0
AUR62022554 Chenopodium quinoa HOM05D003351 ORTHO05D003806 3.3e-15 84.7 73 49.3
PSO782G0254 Papaver somniferum HOM05D003351 ORTHO05D003806 3.3e-15 84.7 71 53.5
FAN10G4309 Fragaria x ananassa HOM05D003351 ORTHO05D003806 5.6e-15 84.0 75 61.3
Lsat_1_v5_gn_7_4460 Lactuca sativa HOM05D003351 ORTHO05D003806 9.5e-15 83.2 64 54.7
PSO478G3804 Papaver somniferum HOM05D003351 ORTHO05D003806 9.5e-15 83.2 71 52.1
Lj7A514T28 Lonicera japonica HOM05D003351 ORTHO05D003806 1.2e-14 82.8 96 44.8
PSO063G6511 Papaver somniferum HOM05D003351 ORTHO05D003806 1.2e-14 82.8 71 53.5
Os04g0558400 Oryza sativa ssp. japonica HOM05D003351 ORTHO05D003806 1.6e-14 82.4 62 53.2
Pp3c14_7450 Physcomitrium patens HOM05D003351 ORTHO05D003806 1.6e-14 82.4 72 58.3
HPP92_008506 Vanilla planifolia HOM05D003351 ORTHO05D003806 2.8e-14 81.6 63 57.1
PSO782G2636 Papaver somniferum HOM05D003351 ORTHO05D003806 4.7e-14 80.9 71 50.7
PGSC0003DMG400000200 Solanum tuberosum HOM05D003351 ORTHO05D003806 4.7e-14 80.9 53 66.0
A10p00320 Brassica napus HOM05D003351 ORTHO05D003806 6.2e-14 80.5 51 64.7
C05p00330 Brassica napus HOM05D003351 ORTHO05D003806 6.2e-14 80.5 51 64.7
DCAR_006927 Daucus carota HOM05D003351 ORTHO05D003806 8.1e-14 80.1 63 50.8
SMO147G0381 Selaginella moellendorffii HOM05D003351 ORTHO05D003806 8.1e-14 80.1 57 59.6
AL6G52960 Arabidopsis lyrata HOM05D003351 ORTHO05D003806 1.4e-13 79.3 52 63.5
MD01G1058300 Malus domestica HOM05D003351 ORTHO05D003806 4.0e-13 77.8 59 55.9
Lj9A583T62 Lonicera japonica HOM05D003351 ORTHO05D003806 5.2e-13 77.4 51 62.7
SEGI_22600 Sequoiadendron giganteum HOM05D003351 ORTHO05D003806 8.9e-13 76.6 71 45.1
Hund27283 Selenicereus undatus HOM05D003351 ORTHO05D003806 3.4e-12 74.7 64 54.7
HanXRQChr04g0121591 Helianthus annuus HOM05D003351 ORTHO05D003806 2.9e-11 71.6 55 54.5
Zm00001eb429310 Zea mays HOM05D003351 ORTHO05D003806 1.1e-10 69.7 52 51.9
SMO147G0196 Selaginella moellendorffii HOM05D003351 ORTHO05D003806 1.4e-10 69.3 51 56.9
SMO273G0019 Selaginella moellendorffii HOM05D003351 ORTHO05D003806 1.9e-10 68.9 50 58.0
Mapoly0016s0008 Marchantia polymorpha HOM05D003351 ORTHO05D003806 2.4e-10 68.6 59 50.8
QL05p057193 Quercus lobata HOM05D003351 ORTHO05D003806 4.1e-10 67.8 75 46.7
AagrBONN_evm.TU.Sc2ySwM_228.1010 Anthoceros agrestis HOM05D003351 ORTHO05D003806 9.2e-10 66.6 57 45.6
PSO063G6016 Papaver somniferum HOM05D001810 ORTHO05D005662 3.5e-09 64.7 63 49.2
AagrBONN_evm.TU.Sc2ySwM_228.998 Anthoceros agrestis HOM05D003351 ORTHO05D003806 4.6e-09 64.3 53 50.9
vmacro23203 Vaccinium macrocarpon HOM05D003351 ORTHO05D003806 1.3e-08 62.8 103 39.8
Pp3c12_25760 Physcomitrium patens HOM05D003351 ORTHO05D003806 5.1e-08 60.8 62 41.9
Pp3c10_19190 Physcomitrium patens HOM05D003351 ORTHO05D003806 1.9e-07 58.9 55 43.6
PRCOL_00006030 Prasinoderma coloniale HOM05D003351 ORTHO05D003806 4.3e-07 57.8 75 41.3


User provided reference genes

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