Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G231900 Glycine max HOM05D005367 ORTHO05D006328 6.6e-97 357.5 191 100.0
Phvul.008G065800 Phaseolus vulgaris HOM05D005367 ORTHO05D006328 3.3e-56 222.2 177 70.6
Lj1g0004821 Lotus japonicus HOM05D005367 ORTHO05D006328 2.4e-54 216.1 174 66.1
VMungo1383G2792 Vigna mungo HOM05D005367 ORTHO05D006328 6.5e-52 208.0 191 62.3
Lalb_Chr01g0011531 Lupinus albus HOM05D005367 ORTHO05D006328 1.1e-46 190.7 167 62.3
Lalb_Chr24g0401631 Lupinus albus HOM05D005367 ORTHO05D006328 1.1e-46 190.7 167 62.3
arahy.Tifrunner.gnm1.ann1.D8DQXR Arachis hypogaea HOM05D005367 ORTHO05D006328 3.1e-46 189.1 174 65.5
arahy.Tifrunner.gnm1.ann1.G5US7K Arachis hypogaea HOM05D005367 ORTHO05D006328 5.3e-46 188.3 174 65.5
Ca_07909_v3 Cicer arietinum L. HOM05D005367 ORTHO05D006328 1.2e-45 187.2 194 55.7
Medtr7g077380 Medicago truncatula HOM05D005367 ORTHO05D006328 9.7e-40 167.5 176 55.1
TPR.G37815 Trifolium pratense HOM05D005367 ORTHO05D006328 9.7e-40 167.5 176 53.4
Dinv43805 Davidia involucrata HOM05D005367 ORTHO05D006328 3.1e-38 162.5 174 54.0
Psat3g109400 Pisum sativum HOM05D005367 ORTHO05D006328 3.1e-38 162.5 178 52.2
CiPaw.02G029900 Carya illinoinensis HOM05D005367 ORTHO05D006328 6.9e-38 161.4 174 49.4
Prupe.2G167900 Prunus persica HOM05D005367 ORTHO05D006328 1.5e-37 160.2 175 50.9
QL08p049031 Quercus lobata HOM05D005367 ORTHO05D006328 1.5e-37 160.2 169 49.7
TAR375G0799 Trochodendron aralioides HOM05D005367 ORTHO05D006328 4.5e-37 158.7 172 48.3
Nn1g01501 Nelumbo nucifera HOM05D005367 ORTHO05D006328 2.2e-36 156.4 172 48.3
CSS0033809 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 5.0e-36 155.2 171 50.3
RcHm_v2.0_Chr1g0355051 Rosa chinensis HOM05D005367 ORTHO05D006328 5.0e-36 155.2 175 52.6
Cfa003939 Carpinus fangiana HOM05D005367 ORTHO05D006328 6.5e-36 154.8 179 50.3
GSVIVG01026893001 Vitis vinifera HOM05D005367 ORTHO05D006328 1.1e-35 154.1 170 50.0
MD01G1057500 Malus domestica HOM05D005367 ORTHO05D006328 2.5e-35 152.9 169 49.1
MD07G1139200 Malus domestica HOM05D005367 ORTHO05D006328 2.5e-35 152.9 169 49.1
Haze_15487 Corylus avellana HOM05D005367 ORTHO05D006328 3.2e-35 152.5 177 50.3
COL.COLO4_12698 Corchorus olitorius HOM05D005367 ORTHO05D006328 9.4e-35 151.0 173 49.1
Hma1.2p1_0001F.1_g001380 Hydrangea macrophylla HOM05D005367 ORTHO05D006328 1.2e-34 150.6 173 47.4
TWI14G0016 Tripterygium wilfordii HOM05D005367 ORTHO05D006328 2.7e-34 149.4 184 46.2
TAR636G2389 Trochodendron aralioides HOM05D003133 ORTHO05D003642 2.7e-34 149.4 174 44.8
Actinidia20916 Actinidia chinensis HOM05D005367 ORTHO05D006328 3.6e-34 149.1 171 48.5
ClCG06G003800 Citrullus lanatus HOM05D005367 ORTHO05D006328 6.1e-34 148.3 168 49.4
CSS0040093 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 7.9e-34 147.9 171 50.3
Cc02_g37850 Coffea canephora HOM05D005367 ORTHO05D006328 7.9e-34 147.9 174 47.7
vmacro13291 Vaccinium macrocarpon HOM05D005367 ORTHO05D006328 7.9e-34 147.9 172 48.8
Potri.014G082600 Populus trichocarpa HOM05D005367 ORTHO05D006328 6.7e-33 144.8 172 45.3
Gohir.D11G092400 Gossypium hirsutum HOM05D005367 ORTHO05D006328 8.8e-33 144.4 171 48.5
Gorai.007G098700 Gossypium raimondii HOM05D005367 ORTHO05D006328 2.0e-32 143.3 171 48.5
Cpa.g.sc18.245 Carica papaya HOM05D005367 ORTHO05D006328 2.6e-32 142.9 173 49.1
Gohir.A11G088100 Gossypium hirsutum HOM05D005367 ORTHO05D006328 3.3e-32 142.5 171 48.0
Thecc.01G360700 Theobroma cacao HOM05D005367 ORTHO05D006328 3.3e-32 142.5 173 47.4
FAN10G0042 Fragaria x ananassa HOM05D005367 ORTHO05D006328 7.4e-32 141.4 166 45.8
FAN01G2456 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.3e-31 140.6 172 45.3
Ciclev10021865m.g Citrus clementina HOM05D005367 ORTHO05D006328 2.8e-31 139.4 172 46.5
FAN03G1221 Fragaria x ananassa HOM05D005367 ORTHO05D006328 3.7e-31 139.0 172 45.3
Duzib133G0249 Durio zibethinus HOM05D005367 ORTHO05D006328 4.8e-31 138.7 173 43.4
FvH4_7g14150 Fragaria vesca HOM05D005367 ORTHO05D006328 4.8e-31 138.7 172 45.3
VMungo1383G2823 Vigna mungo HOM05D005367 ORTHO05D006328 1.1e-30 137.5 190 39.5
FAN06G0563 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.8e-30 136.7 172 44.8
RcHm_v2.0_Chr1g0354801 Rosa chinensis HOM05D005367 ORTHO05D006328 9.1e-30 134.4 175 46.9
TWI59G0064 Tripterygium wilfordii HOM05D005367 ORTHO05D006328 9.1e-30 134.4 170 44.1
Atru.chr5.466 Acer truncatum HOM05D005367 ORTHO05D006328 1.2e-29 134.0 174 45.4
Nitab4.5_0001702g0150 Nicotiana tabacum HOM05D005367 ORTHO05D006328 1.2e-29 134.0 175 40.6
Potri.002G158500 Populus trichocarpa HOM05D005367 ORTHO05D006328 1.2e-29 134.0 172 43.6
PGR031G3282 Punica granatum HOM05D005367 ORTHO05D006328 2.0e-29 133.3 173 43.9
Sed0017642 Sechium edule HOM05D005367 ORTHO05D006328 2.0e-29 133.3 168 45.2
Manes.01G258500 Manihot esculenta HOM05D005367 ORTHO05D006328 2.6e-29 132.9 177 43.5
MELO3C021217.2 Cucumis melo HOM05D005367 ORTHO05D006328 3.4e-29 132.5 193 43.5
Lj9A582T87 Lonicera japonica HOM05D005367 ORTHO05D006328 5.9e-29 131.7 192 42.7
Lsat_1_v5_gn_4_36280 Lactuca sativa HOM05D005367 ORTHO05D006328 7.7e-29 131.3 171 48.0
Gohir.D08G152300 Gossypium hirsutum HOM05D005367 ORTHO05D006328 1.0e-28 131.0 173 42.8
Gohir.A08G130800 Gossypium hirsutum HOM05D005367 ORTHO05D006328 1.3e-28 130.6 172 43.0
CsaV3_6G000470 Cucumis sativus L. HOM05D005367 ORTHO05D006328 2.9e-28 129.4 190 42.6
Nitab4.5_0008050g0010 Nicotiana tabacum HOM05D005367 ORTHO05D006328 2.9e-28 129.4 174 40.8
Manes.06G148200 Manihot esculenta HOM05D005367 ORTHO05D006328 3.8e-28 129.0 197 43.7
Oeu056369.1 Olea europaea HOM05D005367 ORTHO05D006328 3.8e-28 129.0 171 42.7
Gorai.004G158200 Gossypium raimondii HOM05D005367 ORTHO05D006328 8.5e-28 127.9 173 42.2
Sopen05g028210 Solanum pennellii HOM05D005367 ORTHO05D006328 1.1e-27 127.5 172 41.3
PGSC0003DMG400021656 Solanum tuberosum HOM05D005367 ORTHO05D006328 1.1e-27 127.5 174 42.0
ECA234G3275 Erigeron canadensis HOM05D005367 ORTHO05D006328 1.4e-27 127.1 158 46.8
Solyc05g049880.3 Solanum lycopersicum HOM05D005367 ORTHO05D006328 1.9e-27 126.7 172 41.3
SalBow3G2019 Salvia bowleyana HOM05D005367 ORTHO05D006328 3.2e-27 125.9 185 38.4
Nn6g33454 Nelumbo nucifera HOM05D005367 ORTHO05D006328 4.2e-27 125.6 169 41.4
Peaxi162Scf00191g01425 Petunia axillaris HOM05D005367 ORTHO05D006328 4.2e-27 125.6 174 42.0
CANSAT56G3377 Cannabis sativa HOM05D005367 ORTHO05D006328 5.5e-27 125.2 190 41.6
Manes.05G036200 Manihot esculenta HOM05D005367 ORTHO05D006328 5.5e-27 125.2 173 45.1
MSTRG.20826 Avicennia marina HOM05D005367 ORTHO05D006328 9.4e-27 124.4 179 42.5
Eucgr.E00158 Eucalyptus grandis HOM05D005367 ORTHO05D006328 2.1e-26 123.2 173 39.3
HanXRQChr16g0522831 Helianthus annuus HOM05D005367 ORTHO05D006328 2.7e-26 122.9 158 44.9
Hund16930 Selenicereus undatus HOM05D005367 ORTHO05D006328 2.7e-26 122.9 170 42.4
Duzib205G1257 Durio zibethinus HOM05D005367 ORTHO05D006328 3.6e-26 122.5 164 40.2
PGR042G0868 Punica granatum HOM05D005367 ORTHO05D006328 6.1e-26 121.7 158 41.8
THA.LOC104801446 Tarenaya hassleriana HOM05D005367 ORTHO05D006328 7.9e-26 121.3 174 41.4
Migut.B01742 Erythranthe guttata HOM05D005367 ORTHO05D006328 1.4e-25 120.6 171 39.8
AUR62004342 Chenopodium quinoa HOM05D005367 ORTHO05D006328 1.8e-25 120.2 152 44.1
RcHm_v2.0_Chr1g0377581 Rosa chinensis HOM05D005367 ORTHO05D006328 3.0e-25 119.4 158 43.0
Atru.chr1.440 Acer truncatum HOM05D005367 ORTHO05D006328 8.8e-25 117.9 169 42.6
Eucgr.D02282 Eucalyptus grandis HOM05D005367 ORTHO05D006328 1.1e-24 117.5 170 39.4
SGA_v2.0_scaffold11G05663 Striga asiatica HOM05D000368 ORTHO05D006328 1.1e-24 117.5 172 39.5
Ciclev10006075m.g Citrus clementina HOM05D005367 ORTHO05D006328 1.5e-24 117.1 185 38.4
Sc01g0003360 Simmondsia chinensis HOM05D005367 ORTHO05D006328 2.0e-24 116.7 175 41.7
COL.COLO4_14330 Corchorus olitorius HOM05D005367 ORTHO05D006328 2.6e-24 116.3 169 39.6
Aqoxy7G00339 Aquilegia oxysepala HOM05D005367 ORTHO05D006328 3.3e-24 115.9 164 37.8
MD01G1202200 Malus domestica HOM05D005367 ORTHO05D006328 3.3e-24 115.9 161 41.0
unitig_61.g26388 Utricularia gibba HOM05D005367 ORTHO05D006328 5.7e-24 115.2 171 38.0
Atru.chr1.441 Acer truncatum HOM05D005367 ORTHO05D006328 9.7e-24 114.4 178 39.3
EL10Ac1g00429 Beta vulgaris HOM05D005367 ORTHO05D006328 1.3e-23 114.0 157 40.8
Sp1g00570 Schrenkiella parvula HOM05D005367 ORTHO05D006328 4.8e-23 112.1 172 39.5
FAN10G4254 Fragaria x ananassa HOM05D005367 ORTHO05D006328 8.2e-23 111.3 191 37.7
FvH4_7g29600 Fragaria vesca HOM05D005367 ORTHO05D006328 1.8e-22 110.2 176 37.5
FAN10G3657 Fragaria x ananassa HOM05D005367 ORTHO05D006328 3.1e-22 109.4 192 35.9
PSO782G1827 Papaver somniferum HOM05D005367 ORTHO05D006328 4.1e-22 109.0 173 37.6
PSO478G0766 Papaver somniferum HOM05D005367 ORTHO05D006328 9.1e-22 107.8 177 39.5
C08p53830 Brassica napus HOM05D006991 ORTHO05D009188 3.5e-21 105.9 169 34.9
BolC8t52897H Brassica oleracea HOM05D000368 ORTHO05D000289 3.5e-21 105.9 169 34.9
Carub.0001s0048 Capsella rubella HOM05D005367 ORTHO05D006328 5.9e-21 105.1 169 36.7
vmacro06668 Vaccinium macrocarpon HOM05D005367 ORTHO05D006328 7.7e-21 104.8 156 37.8
Ah.05g180710 Amaranthus hybridus HOM05D005367 ORTHO05D006328 1.7e-20 103.6 171 40.9
DCAR_010300 Daucus carota HOM05D005367 ORTHO05D006328 2.9e-20 102.8 167 38.3
QL09p013904 Quercus lobata HOM05D005367 ORTHO05D006328 5.0e-20 102.1 172 37.8
BraA09t42260Z Brassica rapa HOM05D005367 ORTHO05D006328 8.5e-20 101.3 170 36.5
AL1G10610 Arabidopsis lyrata HOM05D005367 ORTHO05D006328 3.2e-19 99.4 171 37.4
HPP92_022052 Vanilla planifolia HOM05D005367 ORTHO05D006328 1.2e-18 97.4 158 34.2
HPP92_027620 Vanilla planifolia HOM05D005367 ORTHO05D006328 1.2e-18 97.4 158 34.2
Thhalv10008538m.g Eutrema salsugineum HOM05D005367 ORTHO05D006328 1.6e-18 97.1 172 36.0
AT1G01730 Arabidopsis thaliana HOM05D005367 ORTHO05D006328 2.7e-18 96.3 174 37.9
Sabra14G0059900 Salix brachista HOM05D005367 ORTHO05D006328 6.7e-17 91.7 223 31.8
Rhsim03G0187100 Rhododendron simsii HOM05D005367 ORTHO05D006328 4.4e-16 89.0 183 33.3
FAN10G0871 Fragaria x ananassa HOM05D005367 ORTHO05D006328 5.7e-16 88.6 81 49.4
FAN03G1577 Fragaria x ananassa HOM05D005367 ORTHO05D006328 7.5e-16 88.2 147 35.4
FAN10G3879 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.2e-15 86.7 81 48.1
FAN28G3009 Fragaria x ananassa HOM05D005367 ORTHO05D006328 4.1e-14 82.4 75 49.3
FAN10G2377 Fragaria x ananassa HOM05D005367 ORTHO05D006328 7.0e-14 81.6 66 54.5
MBI17_g24635_MAGBIO Magnolia biondii HOM05D005367 ORTHO05D006328 1.6e-13 80.5 187 27.3
FAN10G1555 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.0e-12 77.8 127 38.6
MD01G1056800 Malus domestica HOM05D005367 ORTHO05D006328 1.3e-12 77.4 67 56.7
Potri.015G145000 Populus trichocarpa HOM05D005367 ORTHO05D006328 1.3e-12 77.4 137 35.0
AUR62022549 Chenopodium quinoa HOM05D005367 ORTHO05D006328 5.0e-12 75.5 66 53.0
Prupe.2G295600 Prunus persica HOM05D005367 ORTHO05D006328 5.0e-12 75.5 126 38.1
Dinv35219 Davidia involucrata HOM05D005367 ORTHO05D006328 1.1e-11 74.3 148 29.7
Actinidia34119 Actinidia chinensis HOM05D005367 ORTHO05D006328 5.5e-11 72.0 157 29.9
FAN06G3705 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.7e-10 69.7 176 30.7
FAN06G4288 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.7e-10 69.7 176 30.7
DCAR_000242 Daucus carota HOM05D005367 ORTHO05D006328 6.1e-10 68.6 124 37.1
Aa31LG1G11100 Aethionema arabicum HOM05D005367 ORTHO05D006328 4.0e-09 65.9 50 60.0
AUR62022543 Chenopodium quinoa HOM05D000713 ORTHO05D000547 1.3e-07 60.8 71 46.5
CDE08G1175 Ceratophyllum demersum HOM05D005367 ORTHO05D006328 2.2e-07 60.1 90 35.6
Os04g0556900 Oryza sativa ssp. japonica HOM05D005367 ORTHO05D006328 2.2e-07 60.1 166 25.9
Sabra02G0126000 Salix brachista HOM05D005367 ORTHO05D006328 3.1e-06 56.2 52 48.1


User provided reference genes

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