Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G222100 Glycine max HOM05D006822 ORTHO05D008884 0.0e+00 1264.6 690 100.0
Glyma.09G267800 Glycine max HOM05D006822 ORTHO05D008884 0.0e+00 1131.3 693 89.6
Phvul.008G075100 Phaseolus vulgaris HOM05D006822 ORTHO05D008884 2.0e-297 1025.4 664 85.8
VMungo1383G2566 Vigna mungo HOM05D006822 ORTHO05D008884 1.2e-294 1016.1 666 83.2
Lj1g0013249 Lotus japonicus HOM05D006822 ORTHO05D008884 7.5e-268 927.2 667 78.6
Lalb_Chr01g0021331 Lupinus albus HOM05D006822 ORTHO05D008884 2.2e-259 899.0 670 74.8
Ca_07832_v3 Cicer arietinum L. HOM05D006822 ORTHO05D008884 2.3e-248 862.4 653 75.3
arahy.Tifrunner.gnm1.ann1.485MU0 Arachis hypogaea HOM05D006822 ORTHO05D008884 5.1e-240 834.7 675 71.3
arahy.Tifrunner.gnm1.ann1.K16L32 Arachis hypogaea HOM05D006822 ORTHO05D008884 9.9e-228 793.9 675 69.8
TPR.G26925 Trifolium pratense HOM05D006822 ORTHO05D008884 9.0e-221 770.8 655 68.7
Medtr7g075170 Medicago truncatula HOM05D006822 ORTHO05D008884 1.8e-216 756.5 652 68.4
Psat3g115280 Pisum sativum HOM05D006822 ORTHO05D008884 1.8e-213 746.5 655 68.7
CiPaw.01G260400 Carya illinoinensis HOM05D006822 ORTHO05D008884 2.9e-203 712.6 686 58.9
Haze_16833 Corylus avellana HOM05D006822 ORTHO05D008884 3.2e-202 709.1 692 61.3
Cfa001701 Carpinus fangiana HOM05D006822 ORTHO05D008884 2.1e-201 706.4 689 61.0
Thecc.01G374100 Theobroma cacao HOM05D006822 ORTHO05D008884 2.1e-193 679.9 680 57.9
Ciclev10019178m.g Citrus clementina HOM05D006822 ORTHO05D008884 4.7e-193 678.7 681 59.0
vmacro13383 Vaccinium macrocarpon HOM05D006822 ORTHO05D008884 1.1e-189 667.5 674 58.9
Atru.chr5.328 Acer truncatum HOM05D006822 ORTHO05D008884 4.1e-189 665.6 668 58.8
Potri.002G149800 Populus trichocarpa HOM05D006822 ORTHO05D008884 1.3e-187 660.6 670 59.0
GSVIVG01027532001 Vitis vinifera HOM05D006822 ORTHO05D008884 2.5e-186 656.4 666 57.7
Hma1.2p1_0053F.1_g030830 Hydrangea macrophylla HOM05D006822 ORTHO05D008884 3.6e-185 652.5 674 57.7
Medtr7g075185 Medicago truncatula HOM05D006822 ORTHO05D008884 5.2e-184 648.7 640 59.5
QL08p051944 Quercus lobata HOM05D006822 ORTHO05D008884 8.8e-184 647.9 687 58.5
Rhsim07G0025500 Rhododendron simsii HOM05D006822 ORTHO05D008884 1.5e-183 647.1 666 58.3
Cpa.g.sc18.138 Carica papaya HOM05D006822 ORTHO05D008884 2.6e-183 646.4 670 56.1
Manes.01G264800 Manihot esculenta HOM05D006822 ORTHO05D008884 1.7e-182 643.7 686 56.9
MD02G1201200 Malus domestica HOM05D006822 ORTHO05D008884 3.1e-181 639.4 676 54.1
Sabra02G0118500 Salix brachista HOM05D006822 ORTHO05D008884 5.0e-179 632.1 665 57.1
Duzib133G0703 Durio zibethinus HOM05D006822 ORTHO05D008884 3.0e-176 622.9 679 55.1
Aqoxy7G00564 Aquilegia oxysepala HOM05D006822 ORTHO05D008884 6.8e-176 621.7 674 56.2
TAR375G1023 Trochodendron aralioides HOM05D006822 ORTHO05D008884 6.8e-176 621.7 685 55.0
ClCG05G002100 Citrullus lanatus HOM05D006822 ORTHO05D008884 2.8e-174 616.3 684 53.4
CANSAT56G1004 Cannabis sativa HOM05D006822 ORTHO05D008884 7.7e-172 608.2 687 54.9
Gorai.004G041400 Gossypium raimondii HOM05D006822 ORTHO05D008884 1.7e-171 607.1 683 54.5
Lj7A526T89 Lonicera japonica HOM05D006822 ORTHO05D008884 6.6e-171 605.1 686 54.7
COL.COLO4_12575 Corchorus olitorius HOM05D006822 ORTHO05D008884 3.3e-170 602.8 681 55.2
Gohir.A08G031700 Gossypium hirsutum HOM05D006822 ORTHO05D008884 7.2e-170 601.7 692 54.3
Gohir.D08G042800 Gossypium hirsutum HOM05D006822 ORTHO05D008884 1.6e-169 600.5 672 54.9
Dinv32391 Davidia involucrata HOM05D004001 ORTHO05D004559 3.6e-169 599.4 661 56.7
CSS0016394 Camellia sinensis var. sinensis HOM05D006822 ORTHO05D008884 1.4e-168 597.4 669 55.0
Nitab4.5_0004320g0040 Nicotiana tabacum HOM05D006822 ORTHO05D008884 1.4e-168 597.4 674 53.0
MELO3C006175.2 Cucumis melo HOM05D006822 ORTHO05D008884 2.3e-168 596.7 692 52.9
CsaV3_3G009540 Cucumis sativus L. HOM05D006822 ORTHO05D008884 6.8e-168 595.1 680 53.1
Sed0020963 Sechium edule HOM05D006822 ORTHO05D008884 1.2e-167 594.3 669 54.1
Oeu003493.1 Olea europaea HOM05D006822 ORTHO05D008884 4.5e-164 582.4 693 52.7
PGSC0003DMG401012750 Solanum tuberosum HOM05D006822 ORTHO05D008884 2.3e-163 580.1 704 52.3
PSO478G2587 Papaver somniferum HOM05D006822 ORTHO05D008884 2.9e-163 579.7 686 52.2
TWI14G1233 Tripterygium wilfordii HOM05D006822 ORTHO05D008884 7.3e-162 575.1 682 52.9
Ah.05g175170 Amaranthus hybridus HOM05D006822 ORTHO05D008884 1.5e-159 567.4 695 49.9
Peaxi162Scf00021g01312 Petunia axillaris HOM05D006822 ORTHO05D008884 4.4e-159 565.8 736 49.7
Sopen01g037280 Solanum pennellii HOM05D006822 ORTHO05D008884 5.8e-159 565.5 684 52.5
Migut.B01651 Erythranthe guttata HOM05D006822 ORTHO05D008884 7.5e-159 565.1 689 50.1
Eucgr.D02443 Eucalyptus grandis HOM05D006822 ORTHO05D008884 1.3e-158 564.3 691 50.2
Solyc01g091510.4 Solanum lycopersicum HOM05D006822 ORTHO05D008884 1.7e-158 563.9 697 51.4
Prupe.2G147600 Prunus persica HOM05D006822 ORTHO05D008884 8.3e-158 561.6 552 61.8
Sc23g0003500 Simmondsia chinensis HOM05D006822 ORTHO05D008884 4.1e-157 559.3 718 49.6
FAN01G0942 Fragaria x ananassa HOM05D006822 ORTHO05D008884 2.7e-156 556.6 654 51.1
CAN.G170.5 Capsicum annuum HOM05D006822 ORTHO05D008884 3.5e-156 556.2 675 49.6
THA.LOC104817014 Tarenaya hassleriana HOM05D006822 ORTHO05D008884 4.6e-156 555.8 667 49.2
PGR031G1001 Punica granatum HOM05D006822 ORTHO05D008884 7.8e-156 555.1 678 51.9
Nn1g01174 Nelumbo nucifera HOM05D006822 ORTHO05D008884 2.3e-155 553.5 574 57.8
Nitab4.5_0013912g0010 Nicotiana tabacum HOM05D006822 ORTHO05D008884 6.6e-155 552.0 658 53.0
AUR62004233 Chenopodium quinoa HOM05D006822 ORTHO05D008884 8.6e-155 551.6 679 48.3
EL10Ac1g00937 Beta vulgaris HOM05D006822 ORTHO05D008884 1.9e-154 550.4 688 51.5
AUR62013615 Chenopodium quinoa HOM05D006822 ORTHO05D008884 5.6e-154 548.9 686 47.7
Cc02_g36520 Coffea canephora HOM05D006822 ORTHO05D008884 2.8e-153 546.6 703 50.9
SGA_v2.0_scaffold95G28889 Striga asiatica HOM05D006822 ORTHO05D008884 6.2e-153 545.4 671 50.5
HanXRQChr04g0122211 Helianthus annuus HOM05D006822 ORTHO05D008884 3.4e-151 539.7 675 50.8
Lsat_1_v5_gn_7_7481 Lactuca sativa HOM05D006822 ORTHO05D008884 4.4e-151 539.3 664 49.4
RcHm_v2.0_Chr1g0350861 Rosa chinensis HOM05D006822 ORTHO05D008884 4.4e-151 539.3 513 56.9
Actinidia31423 Actinidia chinensis HOM05D006822 ORTHO05D008884 7.5e-151 538.5 660 48.8
FAN06G2864 Fragaria x ananassa HOM05D006822 ORTHO05D008884 4.9e-150 535.8 521 57.0
Hund27354 Selenicereus undatus HOM05D006822 ORTHO05D008884 4.9e-150 535.8 715 47.4
FvH4_7g12110 Fragaria vesca HOM05D006822 ORTHO05D008884 8.3e-150 535.0 521 56.8
Hma1.2p1_0053F.1_g030820 Hydrangea macrophylla HOM05D006822 ORTHO05D008884 2.4e-149 533.5 531 55.9
HPP92_015074 Vanilla planifolia HOM05D006822 ORTHO05D008884 1.4e-144 517.7 698 45.7
Aa31LG1G11250 Aethionema arabicum HOM05D006822 ORTHO05D008884 1.7e-139 500.7 724 45.2
MBI04_g46545_MAGBIO Magnolia biondii HOM05D006822 ORTHO05D008884 2.1e-137 493.8 578 54.3
unitig_22.g5376 Utricularia gibba HOM05D006822 ORTHO05D008884 4.0e-136 489.6 678 46.6
Os04g0574600 Oryza sativa ssp. japonica HOM05D006822 ORTHO05D008884 1.5e-135 487.6 682 45.5
AT1G01930 Arabidopsis thaliana HOM05D006822 ORTHO05D008884 4.9e-134 482.6 522 52.9
AL1G10390 Arabidopsis lyrata HOM05D006822 ORTHO05D008884 9.3e-133 478.4 526 52.1
CDE11G0821 Ceratophyllum demersum HOM05D006822 ORTHO05D008884 1.7e-131 474.2 641 47.0
Sp1g00370 Schrenkiella parvula HOM05D006822 ORTHO05D008884 5.1e-131 472.6 530 50.8
Carub.0001s0031 Capsella rubella HOM05D006822 ORTHO05D008884 1.1e-128 464.9 509 51.9
Thhalv10007219m.g Eutrema salsugineum HOM05D006822 ORTHO05D008884 1.2e-127 461.5 590 50.7
Zm00001eb073430 Zea mays HOM05D006822 ORTHO05D008884 2.0e-127 460.7 688 44.0
CSS0048598 Camellia sinensis var. sinensis HOM05D006822 ORTHO05D008884 1.9e-122 444.1 579 50.6
C08p53940 Brassica napus HOM05D006822 ORTHO05D008884 1.3e-118 431.4 499 50.7
BolC8t52907H Brassica oleracea HOM05D006822 ORTHO05D008884 1.3e-118 431.4 499 50.7
Lsat_1_v5_gn_3_133341 Lactuca sativa HOM05D006822 ORTHO05D008884 1.7e-118 431.0 565 44.8
BraA09t42269Z Brassica rapa HOM05D006822 ORTHO05D008884 3.2e-117 426.8 500 49.6
SEGI_38546 Sequoiadendron giganteum HOM05D006822 ORTHO05D008884 7.1e-117 425.6 692 42.9
ECA236G3401 Erigeron canadensis HOM05D006822 ORTHO05D008884 1.2e-116 424.9 554 50.4
HanXRQChr13g0425441 Helianthus annuus HOM05D006822 ORTHO05D008884 1.1e-114 418.3 524 47.7
FAN03G3111 Fragaria x ananassa HOM05D006822 ORTHO05D008884 4.3e-114 416.4 610 47.7
Eucgr.L02337 Eucalyptus grandis HOM05D006822 ORTHO05D008884 5.6e-114 416.0 596 47.0
ATR0757G063 Amborella trichopoda HOM05D006822 ORTHO05D008884 8.5e-94 349.0 384 50.3
ECA240G3107 Erigeron canadensis HOM05D006822 ORTHO05D008884 1.1e-93 348.6 422 49.5
COL.COLO4_05508 Corchorus olitorius HOM05D006822 ORTHO05D008884 3.2e-93 347.1 384 51.3
AagrBONN_evm.TU.Sc2ySwM_117.565 Anthoceros agrestis HOM05D006822 ORTHO05D008884 2.0e-90 337.8 607 42.7
Mapoly0008s0196 Marchantia polymorpha HOM05D006822 ORTHO05D008884 1.4e-88 331.6 700 37.9
Pp3c3_38070 Physcomitrium patens HOM05D006822 ORTHO05D008884 3.6e-84 317.0 533 38.8
CARHR000420 Cardamine hirsuta HOM05D006822 ORTHO05D008884 8.5e-70 269.2 312 52.9
FAN10G0810 Fragaria x ananassa HOM05D006822 ORTHO05D008884 8.5e-70 269.2 521 35.5
Cre07.g325715 Chlamydomonas reinhardtii HOM05D006822 ORTHO05D008884 9.8e-58 229.2 482 35.3
CARHR000430 Cardamine hirsuta HOM05D006822 ORTHO05D008884 2.8e-57 227.6 226 53.1
SEGI_35234 Sequoiadendron giganteum HOM05D006822 ORTHO05D008884 1.3e-38 165.6 344 42.2
Cfa022202 Carpinus fangiana HOM05D006822 ORTHO05D004559 3.0e-38 164.5 574 29.6
Medtr7g075430 Medicago truncatula HOM05D006822 ORTHO05D008884 2.6e-34 151.4 154 58.4
PRCOL_00005597 Prasinoderma coloniale HOM05D006822 ORTHO05D008884 6.4e-33 146.7 507 27.8
Medtr7g075450 Medicago truncatula HOM05D006822 ORTHO05D008884 1.4e-19 102.4 95 57.9
ATR0757G024 Amborella trichopoda HOM05D006822 ORTHO05D004559 3.5e-15 87.8 188 47.9
arahy.Tifrunner.gnm1.ann1.EYK22X Arachis hypogaea HOM05D006822 ORTHO05D008884 3.5e-15 87.8 54 74.1
CsaV3_4G032230 Cucumis sativus L. HOM05D006822 ORTHO05D008884 2.6e-10 71.6 112 42.9
Medtr7g075420 Medicago truncatula HOM05D006822 ORTHO05D262608 1.3e-09 69.3 79 59.5


User provided reference genes

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