Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G221900 Glycine max HOM05D004001 ORTHO05D004559 0.0e+00 1498.0 881 100.0
Glyma.09G268000 Glycine max HOM05D004001 ORTHO05D004559 0.0e+00 1198.3 863 79.4
Phvul.008G075200 Phaseolus vulgaris HOM05D004001 ORTHO05D004559 0.0e+00 1171.0 861 80.6
arahy.Tifrunner.gnm1.ann1.2UV9R4 Arachis hypogaea HOM05D004001 ORTHO05D004559 0.0e+00 1097.4 868 75.8
arahy.Tifrunner.gnm1.ann1.0Y1PWL Arachis hypogaea HOM05D004001 ORTHO05D004559 0.0e+00 1077.8 868 71.4
arahy.Tifrunner.gnm1.ann1.CI1NNE Arachis hypogaea HOM05D004001 ORTHO05D004559 4.2e-311 1071.2 868 75.6
arahy.Tifrunner.gnm1.ann1.H5PXMS Arachis hypogaea HOM05D004001 ORTHO05D004559 6.6e-309 1063.9 868 74.1
Lj1g0027935 Lotus japonicus HOM05D004001 ORTHO05D004559 6.6e-309 1063.9 865 75.7
Lalb_Chr07g0189651 Lupinus albus HOM05D004001 ORTHO05D004559 4.3e-308 1061.2 841 75.6
Lalb_Chr12g0208391 Lupinus albus HOM05D004001 ORTHO05D004559 3.1e-306 1055.0 843 77.2
Lalb_Chr12g0208441 Lupinus albus HOM05D004001 ORTHO05D004559 3.1e-306 1055.0 843 77.2
Ca_07831_v3 Cicer arietinum L. HOM05D004001 ORTHO05D004559 1.7e-301 1039.3 868 73.8
arahy.Tifrunner.gnm1.ann1.9J1L2I Arachis hypogaea HOM05D004001 ORTHO05D004559 5.6e-292 1007.7 858 74.4
Medtr7g075140 Medicago truncatula HOM05D004001 ORTHO05D004559 4.0e-290 1001.5 885 72.7
arahy.Tifrunner.gnm1.ann1.EYC1DY Arachis hypogaea HOM05D004001 ORTHO05D004559 8.9e-290 1000.3 838 74.3
Psat3g115320 Pisum sativum HOM05D004001 ORTHO05D004559 6.4e-288 994.2 868 71.0
arahy.Tifrunner.gnm1.ann1.JKPH3R Arachis hypogaea HOM05D004001 ORTHO05D004559 5.8e-257 891.3 794 66.8
QL08p051978 Quercus lobata HOM05D004001 ORTHO05D004559 2.7e-254 882.5 873 63.9
Dinv32391 Davidia involucrata HOM05D004001 ORTHO05D004559 6.1e-254 881.3 853 61.5
Haze_16831 Corylus avellana HOM05D004001 ORTHO05D004559 5.3e-250 868.2 892 61.3
Actinidia12272 Actinidia chinensis HOM05D004001 ORTHO05D004559 5.7e-244 848.2 875 58.9
MD02G1201400 Malus domestica HOM05D004001 ORTHO05D004559 2.0e-241 839.7 861 64.1
Cfa001702 Carpinus fangiana HOM05D004001 ORTHO05D004559 5.9e-241 838.2 855 61.5
Actinidia31422 Actinidia chinensis HOM05D004001 ORTHO05D004559 6.5e-240 834.7 875 58.2
Atru.chr5.325 Acer truncatum HOM05D004001 ORTHO05D004559 3.6e-238 828.9 852 58.2
CiPaw.01G260600 Carya illinoinensis HOM05D004001 ORTHO05D004559 9.1e-234 814.3 840 59.4
TPR.G26922 Trifolium pratense HOM05D004001 ORTHO05D004559 1.7e-232 810.1 805 60.7
CANSAT56G0321 Cannabis sativa HOM05D004001 ORTHO05D004559 5.0e-232 808.5 852 59.2
TAR629G2254 Trochodendron aralioides HOM05D004001 ORTHO05D004559 3.2e-231 805.8 886 57.0
RcHm_v2.0_Chr1g0350831 Rosa chinensis HOM05D004001 ORTHO05D004559 8.8e-229 797.7 853 61.0
Thecc.01G374400 Theobroma cacao HOM05D004001 ORTHO05D004559 2.2e-227 793.1 872 57.1
Duzib138G1007 Durio zibethinus HOM05D004001 ORTHO05D004559 9.1e-226 787.7 851 57.7
Eucgr.E01409 Eucalyptus grandis HOM05D004001 ORTHO05D004559 1.0e-224 784.3 819 61.7
FAN03G0266 Fragaria x ananassa HOM05D004001 ORTHO05D004559 5.7e-220 768.5 844 60.3
COL.COLO4_12572 Corchorus olitorius HOM05D004001 ORTHO05D004559 1.7e-219 766.9 800 64.1
Potri.014G071400 Populus trichocarpa HOM05D004001 ORTHO05D004559 4.8e-219 765.4 843 55.8
Prupe.2G147400 Prunus persica HOM05D004001 ORTHO05D004559 4.8e-219 765.4 737 68.2
Gorai.007G092200 Gossypium raimondii HOM05D004001 ORTHO05D004559 1.8e-218 763.5 855 56.5
TAR636G3381 Trochodendron aralioides HOM05D004001 ORTHO05D004559 2.0e-217 760.0 891 53.5
TWI14G1161 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 1.0e-216 757.7 853 56.6
Cc02_g36540 Coffea canephora HOM05D004001 ORTHO05D004559 8.5e-216 754.6 905 57.3
Gohir.D12G105400 Gossypium hirsutum HOM05D004001 ORTHO05D004559 1.9e-215 753.4 824 62.6
Manes.05G044000 Manihot esculenta HOM05D004001 ORTHO05D004559 3.6e-214 749.2 818 56.4
Rhsim07G0025900 Rhododendron simsii HOM05D004001 ORTHO05D004559 1.2e-212 744.2 766 58.9
MSTRG.20759 Avicennia marina HOM05D004001 ORTHO05D004559 3.4e-212 742.7 912 53.1
FAN10G1690 Fragaria x ananassa HOM05D004001 ORTHO05D004559 3.4e-212 742.7 844 54.7
Gohir.D11G086300 Gossypium hirsutum HOM05D004001 ORTHO05D004559 3.4e-212 742.7 855 55.6
FAN10G1409 Fragaria x ananassa HOM05D004001 ORTHO05D004559 4.4e-212 742.3 825 55.3
Lj9C572T3 Lonicera japonica HOM05D004001 ORTHO05D004559 4.4e-212 742.3 848 60.7
FvH4_7g12090 Fragaria vesca HOM05D004001 ORTHO05D004559 2.2e-211 740.0 825 55.4
SalBow5G4135 Salvia bowleyana HOM05D004001 ORTHO05D004559 3.7e-211 739.2 861 55.3
FAN06G2206 Fragaria x ananassa HOM05D004001 ORTHO05D004559 1.1e-210 737.6 829 54.9
Rhsim07G0026000 Rhododendron simsii HOM05D004001 ORTHO05D004559 1.1e-210 737.6 853 54.4
FAN06G4715 Fragaria x ananassa HOM05D004001 ORTHO05D004559 1.4e-210 737.3 825 54.9
CsaV3_3G009550 Cucumis sativus L. HOM05D004001 ORTHO05D004559 1.2e-209 734.2 851 54.3
Solyc01g091500.3 Solanum lycopersicum HOM05D004001 ORTHO05D004559 1.2e-206 724.2 894 52.3
Gorai.008G114700 Gossypium raimondii HOM05D004001 ORTHO05D004559 4.0e-205 719.2 836 55.6
Nitab4.5_0010473g0020 Nicotiana tabacum HOM05D004001 ORTHO05D004559 6.8e-205 718.4 866 53.8
Sopen01g037250 Solanum pennellii HOM05D004001 ORTHO05D004559 1.5e-204 717.2 883 52.7
ClCG05G002120 Citrullus lanatus HOM05D004001 ORTHO05D004559 8.3e-203 711.4 940 50.6
Sabra14G0050700 Salix brachista HOM05D004001 ORTHO05D004559 1.7e-200 703.7 842 54.2
PGSC0003DMG400012752 Solanum tuberosum HOM05D004001 ORTHO05D004559 3.9e-200 702.6 886 53.4
Aqoxy7G00586 Aquilegia oxysepala HOM05D004001 ORTHO05D004559 8.6e-200 701.4 835 55.1
Sc26g0001190 Simmondsia chinensis HOM05D004001 ORTHO05D004559 4.7e-198 695.7 843 54.8
GSVIVG01027630001 Vitis vinifera HOM05D004001 ORTHO05D004559 1.2e-196 691.0 831 54.2
PSO478G3708 Papaver somniferum HOM05D004001 ORTHO05D004559 4.4e-196 689.1 887 49.7
Nitab4.5_0004320g0020 Nicotiana tabacum HOM05D004001 ORTHO05D004559 9.8e-196 688.0 896 51.5
PSO782G3046 Papaver somniferum HOM05D004001 ORTHO05D004559 2.2e-195 686.8 876 51.7
HanXRQChr03g0093811 Helianthus annuus HOM05D004001 ORTHO05D004559 6.4e-195 685.3 842 56.8
Ciclev10018784m.g Citrus clementina HOM05D004001 ORTHO05D004559 1.1e-194 684.5 850 51.8
Nn4g26437 Nelumbo nucifera HOM05D004001 ORTHO05D004559 1.4e-194 684.1 869 51.3
CAN.G170.4 Capsicum annuum HOM05D004001 ORTHO05D004559 3.9e-192 676.0 872 50.6
Migut.B01647 Erythranthe guttata HOM05D004001 ORTHO05D004559 9.5e-191 671.4 852 56.5
BcaB02g08998 Brassica carinata HOM05D004001 ORTHO05D004559 2.0e-188 663.7 857 55.3
EL10Ac1g00911 Beta vulgaris HOM05D004001 ORTHO05D004559 6.4e-187 658.7 866 49.8
Hund17008 Selenicereus undatus HOM05D004001 ORTHO05D004559 1.9e-186 657.1 921 47.9
AUR62013619 Chenopodium quinoa HOM05D004001 ORTHO05D004559 2.5e-183 646.7 843 50.8
Aa31LG1G26960 Aethionema arabicum HOM05D004001 ORTHO05D004559 2.1e-182 643.7 846 54.1
ECA240G2591 Erigeron canadensis HOM05D004001 ORTHO05D004559 8.1e-182 641.7 837 56.4
MELO3C006177.2 Cucumis melo HOM05D004001 ORTHO05D004559 2.3e-181 640.2 851 54.2
Sp4g27490 Schrenkiella parvula HOM05D004001 ORTHO05D004559 4.4e-180 636.0 852 53.6
PGR042G2753 Punica granatum HOM05D004001 ORTHO05D004559 5.8e-180 635.6 887 52.3
Oeu037907.1 Olea europaea HOM05D004001 ORTHO05D004559 9.9e-180 634.8 834 51.3
SGA_v2.0_scaffold95G28893 Striga asiatica HOM05D004001 ORTHO05D004559 1.7e-179 634.0 870 53.1
vmacro13388 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 4.1e-178 629.4 721 57.3
AL4G44630 Arabidopsis lyrata HOM05D004001 ORTHO05D004559 5.4e-178 629.0 881 51.9
CARHR140650 Cardamine hirsuta HOM05D004001 ORTHO05D004559 1.7e-176 624.0 867 51.9
C04p06430 Brassica napus HOM05D004001 ORTHO05D004559 1.5e-175 620.9 865 52.5
Lsat_1_v5_gn_3_133301 Lactuca sativa HOM05D004001 ORTHO05D004559 5.6e-175 619.0 825 55.2
AT2G45460 Arabidopsis thaliana HOM05D004001 ORTHO05D004559 2.1e-174 617.1 876 51.6
A05p05490 Brassica napus HOM05D004001 ORTHO05D004559 6.2e-174 615.5 863 52.4
BcaC02g12205 Brassica carinata HOM05D004001 ORTHO05D004559 8.1e-174 615.1 865 52.3
Gohir.A12G102200 Gossypium hirsutum HOM05D004001 ORTHO05D004559 1.1e-173 614.8 871 49.4
BolC4t22266H Brassica oleracea HOM05D004001 ORTHO05D004559 8.9e-173 611.7 880 50.7
AUR62004229 Chenopodium quinoa HOM05D004001 ORTHO05D004559 1.5e-172 610.9 884 48.0
BraA05t19519Z Brassica rapa HOM05D004001 ORTHO05D004559 6.4e-171 605.5 884 50.3
Peaxi162Scf00021g01316 Petunia axillaris HOM05D004001 ORTHO05D004559 1.1e-167 594.7 903 46.0
Thhalv10001303m.g Eutrema salsugineum HOM05D004001 ORTHO05D004559 1.9e-167 594.0 859 49.9
Lj7C526G13 Lonicera japonica HOM05D004001 ORTHO05D004559 3.3e-167 593.2 842 47.5
Sed0014964 Sechium edule HOM05D004001 ORTHO05D004559 3.4e-164 583.2 741 51.8
Carub.0004s2807 Capsella rubella HOM05D004001 ORTHO05D004559 1.3e-160 571.2 875 49.1
Gohir.A11G081700 Gossypium hirsutum HOM05D004001 ORTHO05D004559 9.6e-159 565.1 854 51.8
unitig_8.g3817 Utricularia gibba HOM05D004001 ORTHO05D004559 6.2e-158 562.4 833 46.2
MBI11_g23939_MAGBIO Magnolia biondii HOM05D004001 ORTHO05D004559 9.0e-157 558.5 717 57.7
VMungo1383G1498 Vigna mungo HOM05D004001 ORTHO05D004559 2.2e-155 553.9 363 81.5
CDE04G0282 Ceratophyllum demersum HOM05D004001 ORTHO05D004559 3.2e-154 550.1 816 45.6
CSS0038978 Camellia sinensis var. sinensis HOM05D004001 ORTHO05D004559 3.9e-144 516.5 434 65.0
Os03g0127600 Oryza sativa ssp. japonica HOM05D004001 ORTHO05D004559 9.0e-141 505.4 878 42.4
SGA_v2.0_scaffold153G37027 Striga asiatica HOM05D004001 ORTHO05D001724 3.4e-140 503.4 859 43.2
Ah.16g103740 Amaranthus hybridus HOM05D004001 ORTHO05D004559 3.5e-137 493.4 877 44.0
Zm00001eb403560 Zea mays HOM05D004001 ORTHO05D004559 3.6e-129 466.8 882 40.5
ATR0757G164 Amborella trichopoda HOM05D004001 ORTHO05D004559 1.4e-120 438.3 883 43.0
Zm00001eb002020 Zea mays HOM05D004001 ORTHO05D004559 1.2e-116 425.2 841 42.2
SHI13515 Sapria himalayana HOM05D004001 ORTHO05D004559 3.3e-111 407.1 468 51.1
arahy.Tifrunner.gnm1.ann1.RB3Z54 Arachis hypogaea HOM05D004001 ORTHO05D004559 5.9e-108 396.4 528 50.9
SEGI_05063 Sequoiadendron giganteum HOM05D004001 ORTHO05D004559 7.5e-103 379.4 874 40.7
HPP92_018394 Vanilla planifolia HOM05D004001 ORTHO05D004559 1.2e-92 345.5 630 45.1
arahy.Tifrunner.gnm1.ann1.5M5P73 Arachis hypogaea HOM05D004001 ORTHO05D004559 1.2e-89 335.5 420 51.4
DCAR_006877 Daucus carota HOM05D004001 ORTHO05D004559 7.5e-87 326.2 404 49.0
unitig_31.g34038 Utricularia gibba HOM05D004001 ORTHO05D004559 1.7e-83 315.1 592 40.4
AagrBONN_evm.TU.Sc2ySwM_362.1643 Anthoceros agrestis HOM05D004001 ORTHO05D004559 3.1e-80 304.3 540 45.2
DCAR_006876 Daucus carota HOM05D004001 ORTHO05D004559 4.0e-80 303.9 385 54.8
CSS0022656 Camellia sinensis var. sinensis HOM05D004001 ORTHO05D004559 2.4e-77 294.7 388 51.8
VMungo1383G3044 Vigna mungo HOM05D004001 ORTHO05D004559 1.9e-74 285.0 204 75.5
SalBow3G1117 Salvia bowleyana HOM05D004001 ORTHO05D004559 2.3e-72 278.1 245 58.8
Actinidia33460 Actinidia chinensis HOM05D004001 ORTHO05D004559 1.2e-57 229.2 182 65.4
Mapoly0005s0201 Marchantia polymorpha HOM05D004001 ORTHO05D004559 8.1e-57 226.5 890 33.6
Oeu005774.1 Olea europaea HOM05D004001 ORTHO05D004559 1.5e-55 222.2 209 62.2
Pp3c5_28010 Physcomitrium patens HOM05D004001 ORTHO05D004559 1.5e-47 195.7 915 32.5
vmacro13387 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 4.9e-46 190.7 138 65.9
arahy.Tifrunner.gnm1.ann1.2V3ERI Arachis hypogaea HOM05D004001 ORTHO05D004559 1.3e-43 182.6 502 41.6
arahy.Tifrunner.gnm1.ann1.63QVJR Arachis hypogaea HOM05D004001 ORTHO05D004559 7.4e-42 176.8 502 41.6
arahy.Tifrunner.gnm1.ann1.Q8AXKZ Arachis hypogaea HOM05D005562 ORTHO05D007785 6.4e-38 163.7 146 72.6
SEGI_21780 Sequoiadendron giganteum HOM05D004001 ORTHO05D004559 4.6e-36 157.5 648 33.5
CBR_g40168 Chara braunii HOM05D004001 ORTHO05D004559 1.5e-34 152.5 651 29.8
arahy.Tifrunner.gnm1.ann1.LXQN6Z Arachis hypogaea HOM05D004001 ORTHO05D004559 7.4e-34 150.2 519 33.7
arahy.Tifrunner.gnm1.ann1.FJEF2G Arachis hypogaea HOM05D004001 ORTHO05D004559 1.1e-32 146.4 336 34.8
arahy.Tifrunner.gnm1.ann1.K6PBMX Arachis hypogaea HOM05D004001 ORTHO05D004559 1.2e-31 142.9 170 52.9
Mapoly0048s0074 Marchantia polymorpha HOM05D004001 ORTHO05D004559 3.8e-30 137.9 240 36.2
Hma1.2p1_1793F.1_g302640 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 2.5e-29 135.2 103 67.0
Rhsim07G0026800 Rhododendron simsii HOM05D004001 ORTHO05D004559 5.5e-29 134.0 250 44.4
arahy.Tifrunner.gnm1.ann1.7YWS89 Arachis hypogaea HOM05D004001 ORTHO05D004559 2.5e-26 125.2 389 40.4
Hma1.2p1_1793F.1_g302630 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 2.5e-26 125.2 98 61.2
Hma1.2p1_3528F.1_g336625 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 2.5e-26 125.2 98 61.2
arahy.Tifrunner.gnm1.ann1.DK59KL Arachis hypogaea HOM05D004001 ORTHO05D004559 8.2e-25 120.2 155 49.0
Cpa.g.sc18.133 Carica papaya HOM05D004001 ORTHO05D004559 1.0e-19 103.2 247 44.9
arahy.Tifrunner.gnm1.ann1.Y88425 Arachis hypogaea HOM05D004001 ORTHO05D004559 5.1e-19 100.9 148 43.9
Psat6g122920 Pisum sativum HOM05D004001 ORTHO05D004559 5.3e-16 90.9 46 93.5
arahy.Tifrunner.gnm1.ann1.YQ72RL Arachis hypogaea HOM05D004001 ORTHO05D004559 1.0e-14 86.7 185 37.3
EL10Ac2g04735 Beta vulgaris HOM05D002948 ORTHO05D003577 1.3e-14 86.3 120 44.2
vmacro22718 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 1.7e-14 85.9 65 70.8
arahy.Tifrunner.gnm1.ann1.8X1DD2 Arachis hypogaea HOM05D004001 ORTHO05D004559 2.5e-13 82.0 96 51.0
TWI56G0444 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 9.4e-13 80.1 154 37.7
TWI56G1146 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 1.6e-12 79.3 168 35.7
TWI56G0921 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 2.1e-12 79.0 168 35.7
TWI56G1317 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 2.1e-12 79.0 168 35.7
TWI56G0254 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 1.8e-11 75.9 155 36.8
TWI56G1263 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 1.8e-11 75.9 155 36.8
SMO147G0240 Selaginella moellendorffii HOM05D004001 ORTHO05D004559 8.8e-11 73.6 296 29.1
Dinv00152 Davidia involucrata HOM05D026811 ORTHO05D004559 7.4e-10 70.5 56 66.1
Dinv00153 Davidia involucrata HOM05D004001 ORTHO05D004559 7.4e-10 70.5 56 66.1
BcaC07g37285 Brassica carinata HOM05D025803 ORTHO05D027242 3.7e-09 68.2 48 70.8
Hma1.2p1_3528F.1_g336630 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 4.8e-09 67.8 42 81.0
Dinv00151 Davidia involucrata HOM05D026811 ORTHO05D004559 7.7e-07 60.5 117 41.0
Oeu005773.1 Olea europaea HOM05D004001 ORTHO05D004559 1.3e-06 59.7 54 55.6
Cpa.g.sc18.136 Carica papaya HOM05D004001 ORTHO05D004559 1.7e-06 59.3 42 66.7
arahy.Tifrunner.gnm1.ann1.GD98VG Arachis hypogaea HOM05D004001 ORTHO05D004559 5.0e-06 57.8 45 68.9


User provided reference genes

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