Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G221800 Glycine max HOM05D003683 ORTHO05D004143 1.9e-51 205.7 111 100.0
Phvul.008G075300 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 5.3e-38 161.0 116 83.6
Glyma.09G268100 Glycine max HOM05D003683 ORTHO05D004143 4.5e-37 157.9 112 84.8
VMungo1383G1500 Vigna mungo HOM05D003683 ORTHO05D004143 3.8e-36 154.8 116 81.9
Lalb_Chr03g0039121 Lupinus albus HOM05D003683 ORTHO05D004143 8.4e-28 127.1 115 70.4
Glyma.03G022200 Glycine max HOM05D003683 ORTHO05D004143 1.6e-23 112.8 114 64.9
Lj3g0025203 Lotus japonicus HOM05D003683 ORTHO05D004143 6.2e-23 110.9 111 64.0
Glyma.01G144700 Glycine max HOM05D003683 ORTHO05D004143 2.0e-21 105.9 115 60.0
Lj1g0021851 Lotus japonicus HOM05D003683 ORTHO05D004143 4.9e-20 101.3 113 61.9
Medtr7g075120 Medicago truncatula HOM05D003683 ORTHO05D004143 8.4e-20 100.5 112 65.2
Phvul.010G085600 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 5.1e-17 91.3 109 55.0
Cfa001703 Carpinus fangiana HOM05D003683 ORTHO05D004143 3.3e-16 88.6 93 61.3
Lalb_Chr01g0021341 Lupinus albus HOM05D003683 ORTHO05D004143 1.3e-15 86.7 114 56.1
Psat3g115360 Pisum sativum HOM05D003683 ORTHO05D004143 6.3e-15 84.3 112 56.2
arahy.Tifrunner.gnm1.ann1.1L371M Arachis hypogaea HOM05D003683 ORTHO05D004143 5.3e-14 81.3 109 50.5
CiPaw.01G260700 Carya illinoinensis HOM05D003683 ORTHO05D004143 1.5e-13 79.7 113 49.6
arahy.Tifrunner.gnm1.ann1.00XFQD Arachis hypogaea HOM05D003683 ORTHO05D004143 2.0e-13 79.3 109 50.5
CiPaw.02G166400 Carya illinoinensis HOM05D003683 ORTHO05D004143 2.0e-13 79.3 101 50.5
Potri.002G149600 Populus trichocarpa HOM05D003683 ORTHO05D004143 2.6e-13 79.0 93 54.8
Duzib133G0707 Durio zibethinus HOM05D003683 ORTHO05D004143 1.7e-12 76.3 89 58.4
Potri.014G071200 Populus trichocarpa HOM05D003683 ORTHO05D004143 1.7e-12 76.3 97 53.6
Ca_07830_v3 Cicer arietinum L. HOM05D003683 ORTHO05D004143 2.2e-12 75.9 112 53.6
COL.COLO4_12571 Corchorus olitorius HOM05D003683 ORTHO05D004143 8.5e-12 73.9 116 48.3
Thecc.01G374500 Theobroma cacao HOM05D003683 ORTHO05D004143 8.5e-12 73.9 112 50.0
TPR.G26945 Trifolium pratense HOM05D003683 ORTHO05D004143 8.5e-12 73.9 113 54.0
Hma1.2p1_3528F.1_g336600 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 2.5e-11 72.4 92 54.3
RcHm_v2.0_Chr1g0350821 Rosa chinensis HOM05D003683 ORTHO05D004143 4.2e-11 71.6 103 50.5
Dinv43725 Davidia involucrata HOM05D003683 ORTHO05D004143 5.5e-11 71.2 112 47.3
Dinv32390 Davidia involucrata HOM05D003683 ORTHO05D004143 9.4e-11 70.5 115 47.0
Hma1.2p1_1793F.1_g302590 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 1.2e-10 70.1 90 54.4
Lj2A204T52 Lonicera japonica HOM05D003683 ORTHO05D004143 2.1e-10 69.3 98 48.0
Duzib138G1197 Durio zibethinus HOM05D003683 ORTHO05D004143 6.1e-10 67.8 114 44.7
MELO3C006178.2 Cucumis melo HOM05D003683 ORTHO05D004143 7.9e-10 67.4 77 58.4
FvH4_7g12070 Fragaria vesca HOM05D003683 ORTHO05D004143 1.8e-09 66.2 103 49.5
FAN06G0493 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.8e-09 66.2 103 49.5
FAN06G2934 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.8e-09 66.2 103 49.5
FAN10G4272 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.8e-09 66.2 103 49.5
Sed0003331 Sechium edule HOM05D003683 ORTHO05D004143 1.8e-09 66.2 111 49.5
ClCG05G002130 Citrullus lanatus HOM05D003683 ORTHO05D004143 2.3e-09 65.9 73 57.5
Ciclev10023705m.g Citrus clementina HOM05D003683 ORTHO05D004143 2.3e-09 65.9 84 50.0
HanXRQChr17g0557021 Helianthus annuus HOM05D003683 ORTHO05D004143 2.3e-09 65.9 100 46.0
FAN10G1839 Fragaria x ananassa HOM05D003683 ORTHO05D004143 3.0e-09 65.5 76 56.6
Aqoxy7G00590 Aquilegia oxysepala HOM05D003683 ORTHO05D004143 6.7e-09 64.3 51 58.8
FAN01G1734 Fragaria x ananassa HOM05D003683 ORTHO05D004143 6.7e-09 64.3 101 47.5
Gohir.A11G081600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 6.7e-09 64.3 87 48.3
Gohir.D11G086200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 6.7e-09 64.3 89 48.3
Prupe.2G147300 Prunus persica HOM05D003683 ORTHO05D004143 8.8e-09 63.9 104 44.2
CsaV3_3G009560 Cucumis sativus L. HOM05D003683 ORTHO05D004143 1.1e-08 63.5 70 60.0
Thhalv10001694m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 1.5e-08 63.2 71 53.5
BcaC01g05122 Brassica carinata HOM05D003683 ORTHO05D004143 2.5e-08 62.4 76 51.3
BcaC01g05135 Brassica carinata HOM05D003683 ORTHO05D004143 2.5e-08 62.4 76 51.3
BcaC02g12206 Brassica carinata HOM05D003683 ORTHO05D004143 2.5e-08 62.4 71 52.1
A03p25230 Brassica napus HOM05D003683 ORTHO05D004143 2.5e-08 62.4 76 51.3
A05p05480 Brassica napus HOM05D003683 ORTHO05D004143 2.5e-08 62.4 71 52.1
C03p30100 Brassica napus HOM05D003683 ORTHO05D004143 2.5e-08 62.4 76 51.3
C04p06420 Brassica napus HOM05D003683 ORTHO05D004143 2.5e-08 62.4 71 52.1
BraA05t19518Z Brassica rapa HOM05D003683 ORTHO05D004143 2.5e-08 62.4 71 52.1
GSVIVG01027629001 Vitis vinifera HOM05D003683 ORTHO05D004143 2.5e-08 62.4 105 47.6
BcaB01g03267 Brassica carinata HOM05D003683 ORTHO05D004143 3.3e-08 62.0 76 50.0
CAN.G630.45 Capsicum annuum HOM05D003683 ORTHO05D004143 4.3e-08 61.6 98 43.9
CARHR140640 Cardamine hirsuta HOM05D003683 ORTHO05D004143 4.3e-08 61.6 74 55.4
Cfa012041 Carpinus fangiana HOM05D003683 ORTHO05D004143 9.7e-08 60.5 48 64.6
Sp4g27480 Schrenkiella parvula HOM05D003683 ORTHO05D004143 9.7e-08 60.5 71 52.1
BcaB06g29422 Brassica carinata HOM05D003683 ORTHO05D004143 1.3e-07 60.1 70 52.9
BcaB02g08997 Brassica carinata HOM05D003683 ORTHO05D004143 1.7e-07 59.7 71 50.7
CARHR171270 Cardamine hirsuta HOM05D003683 ORTHO05D004143 1.7e-07 59.7 98 44.9
DCAR_008443 Daucus carota HOM05D003683 ORTHO05D004143 2.2e-07 59.3 100 42.0
Manes.01G071300 Manihot esculenta HOM05D003683 ORTHO05D004143 2.2e-07 59.3 44 68.2
AL4G44620 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 2.8e-07 58.9 74 54.1
BcaB02g08986 Brassica carinata HOM05D003683 ORTHO05D004143 2.8e-07 58.9 73 49.3
BolC4t22265H Brassica oleracea HOM05D003683 ORTHO05D004143 2.8e-07 58.9 94 43.6
Dinv39058 Davidia involucrata HOM05D003683 ORTHO05D004143 2.8e-07 58.9 84 46.4
Lsat_1_v5_gn_4_37980 Lactuca sativa HOM05D003683 ORTHO05D004143 2.8e-07 58.9 91 47.3
Nn4g26435 Nelumbo nucifera HOM05D003683 ORTHO05D004143 2.8e-07 58.9 81 46.9
Atru.chr9.1472 Acer truncatum HOM05D003683 ORTHO05D004143 3.7e-07 58.5 68 52.9
Carub.0005s2764 Capsella rubella HOM05D003683 ORTHO05D004143 3.7e-07 58.5 98 44.9
Gohir.A03G010200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 3.7e-07 58.5 82 47.6
Gohir.A12G102100 Gossypium hirsutum HOM05D003683 ORTHO05D004143 3.7e-07 58.5 89 44.9
Manes.02G031900 Manihot esculenta HOM05D003683 ORTHO05D004143 3.7e-07 58.5 44 65.9
GSVIVG01019925001 Vitis vinifera HOM05D003683 ORTHO05D004143 3.7e-07 58.5 61 52.5
COL.COLO4_23839 Corchorus olitorius HOM05D003683 ORTHO05D004143 4.8e-07 58.2 82 50.0
MELO3C005596.2 Cucumis melo HOM05D003683 ORTHO05D004143 4.8e-07 58.2 58 56.9
Sopen08g003530 Solanum pennellii HOM05D003683 ORTHO05D004143 4.8e-07 58.2 86 44.2
TWI23G1078 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 4.8e-07 58.2 103 43.7
CSS0019244 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 6.3e-07 57.8 85 48.2
TAR629G0669 Trochodendron aralioides HOM05D003683 ORTHO05D004143 6.3e-07 57.8 104 39.4
TAR629G3017 Trochodendron aralioides HOM05D003683 ORTHO05D004143 6.3e-07 57.8 104 39.4
Aa31LG1G26950 Aethionema arabicum HOM05D003683 ORTHO05D004143 8.2e-07 57.4 68 51.5
ClCG01G003480 Citrullus lanatus HOM05D003683 ORTHO05D004143 8.2e-07 57.4 58 55.2
Dinv37740 Davidia involucrata HOM05D003683 ORTHO05D004143 8.2e-07 57.4 86 43.0
Gohir.A12G222400 Gossypium hirsutum HOM05D003683 ORTHO05D004143 8.2e-07 57.4 81 45.7
Gorai.003G167900 Gossypium raimondii HOM05D003683 ORTHO05D004143 8.2e-07 57.4 83 45.8
MD07G1124000 Malus domestica HOM05D003683 ORTHO05D004143 8.2e-07 57.4 86 54.7
Manes.01G264900 Manihot esculenta HOM05D003683 ORTHO05D004143 8.2e-07 57.4 82 50.0
Solyc08g079690.4 Solanum lycopersicum HOM05D003683 ORTHO05D004143 8.2e-07 57.4 46 65.2
PGSC0003DMG400003921 Solanum tuberosum HOM05D003683 ORTHO05D004143 8.2e-07 57.4 66 53.0
Cc08_g13490 Coffea canephora HOM05D003683 ORTHO05D004143 1.1e-06 57.0 72 50.0
Haze_09035 Corylus avellana HOM05D003683 ORTHO05D004143 1.1e-06 57.0 90 44.4
Gohir.D03G159600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.1e-06 57.0 82 46.3
Oeu056803.1 Olea europaea HOM05D003683 ORTHO05D004143 1.1e-06 57.0 66 50.0
Peaxi162Scf00021g00139 Petunia axillaris HOM05D003683 ORTHO05D004143 1.1e-06 57.0 84 50.0
TAR375G1063 Trochodendron aralioides HOM05D003683 ORTHO05D004143 1.1e-06 57.0 101 39.6
CsaV3_5G003580 Cucumis sativus L. HOM05D003683 ORTHO05D004143 1.4e-06 56.6 55 56.4
Sabra01G0087900 Salix brachista HOM05D003683 ORTHO05D004143 1.4e-06 56.6 87 46.0
ATR0820G297 Amborella trichopoda HOM05D003360 ORTHO05D003759 1.8e-06 56.2 44 65.9
AT2G45450 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 1.8e-06 56.2 74 51.4
BcaC02g07091 Brassica carinata HOM05D003683 ORTHO05D004143 1.8e-06 56.2 82 45.1
C04p71580 Brassica napus HOM05D003683 ORTHO05D004143 1.8e-06 56.2 82 45.1
BolC4t28663H Brassica oleracea HOM05D003683 ORTHO05D004143 1.8e-06 56.2 82 45.1
CiPaw.11G145300 Carya illinoinensis HOM05D003683 ORTHO05D004143 1.8e-06 56.2 63 49.2
Gorai.008G114600 Gossypium raimondii HOM05D003683 ORTHO05D004143 1.8e-06 56.2 89 44.9
MD02G1201500 Malus domestica HOM05D003683 ORTHO05D004143 1.8e-06 56.2 84 52.4
Carub.0004s2806 Capsella rubella HOM05D003683 ORTHO05D004143 2.4e-06 55.8 75 50.7
Eucgr.E00491 Eucalyptus grandis HOM05D003683 ORTHO05D004143 2.4e-06 55.8 62 54.8
HanXRQChr16g0521651 Helianthus annuus HOM05D003683 ORTHO05D004143 2.4e-06 55.8 102 43.1
Nitab4.5_0006122g0030 Nicotiana tabacum HOM05D003683 ORTHO05D004143 2.4e-06 55.8 64 54.7
Potri.003G117200 Populus trichocarpa HOM05D003683 ORTHO05D004143 2.4e-06 55.8 88 46.6
SalBow6G6235 Salvia bowleyana HOM05D003683 ORTHO05D004143 2.4e-06 55.8 63 54.0
Solyc01g091490.3 Solanum lycopersicum HOM05D003683 ORTHO05D004143 2.4e-06 55.8 79 46.8
AT3G60890 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 3.1e-06 55.5 87 46.0
Gorai.008G241000 Gossypium raimondii HOM05D003683 ORTHO05D004143 3.1e-06 55.5 81 44.4
Hma1.2p1_0138F.1_g062970 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 3.1e-06 55.5 81 45.7
A07p25250 Brassica napus HOM05D003683 ORTHO05D004143 4.1e-06 55.1 82 45.1
BraA07t30167Z Brassica rapa HOM05D003683 ORTHO05D004143 4.1e-06 55.1 82 43.9
Peaxi162Scf00102g01336 Petunia axillaris HOM05D003683 ORTHO05D004143 4.1e-06 55.1 77 49.4
QL12p015617 Quercus lobata HOM05D003683 ORTHO05D004143 4.1e-06 55.1 99 39.4
Sp5g02360 Schrenkiella parvula HOM05D003683 ORTHO05D004143 4.1e-06 55.1 87 44.8
Thecc.03G264300 Theobroma cacao HOM05D003683 ORTHO05D004143 4.1e-06 55.1 82 47.6
A04p33850 Brassica napus HOM05D003683 ORTHO05D004143 5.3e-06 54.7 77 45.5
BraA04t18845Z Brassica rapa HOM05D003683 ORTHO05D004143 5.3e-06 54.7 77 45.5
Thhalv10006309m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 5.3e-06 54.7 105 41.9
Lsat_1_v5_gn_2_24580 Lactuca sativa HOM05D003360 ORTHO05D003759 5.3e-06 54.7 54 59.3
MBI04_g32262_MAGBIO Magnolia biondii HOM05D003683 ORTHO05D004143 5.3e-06 54.7 74 47.3
Nitab4.5_0000439g0100 Nicotiana tabacum HOM05D003683 ORTHO05D004143 5.3e-06 54.7 64 54.7
Sabra03G0081600 Salix brachista HOM05D003683 ORTHO05D004143 5.3e-06 54.7 55 50.9
EL10Ac5g12652 Beta vulgaris HOM05D003683 ORTHO05D004143 9.1e-06 53.9 86 39.5
BcaC02g10196 Brassica carinata HOM05D003683 ORTHO05D004143 9.1e-06 53.9 100 40.0
A04p01350 Brassica napus HOM05D003683 ORTHO05D004143 9.1e-06 53.9 77 45.5
Cpa.g.sc29.63 Carica papaya HOM05D003683 ORTHO05D004143 9.1e-06 53.9 41 65.9
DCAR_013380 Daucus carota HOM05D003360 ORTHO05D003759 9.1e-06 53.9 46 65.2
Oeu064712.1 Olea europaea HOM05D003683 ORTHO05D004143 9.1e-06 53.9 78 48.7
Sabra02G0118400 Salix brachista HOM05D003683 ORTHO05D004143 9.1e-06 53.9 93 41.9
Sopen08g028050 Solanum pennellii HOM05D003683 ORTHO05D004143 9.1e-06 53.9 64 51.6


User provided reference genes

Program Settings