Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G217100 Glycine max HOM05D004172 ORTHO05D006010 0.0e+00 1143.6 599 100.0
Glyma.09G271900 Glycine max HOM05D004172 ORTHO05D006010 0.0e+00 1129.8 599 98.8
Phvul.008G079500 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 0.0e+00 1107.4 599 96.3
VMungo1383G2431 Vigna mungo HOM05D004172 ORTHO05D006010 0.0e+00 1102.0 599 95.5
Lj1g0013582 Lotus japonicus HOM05D004172 ORTHO05D006010 2.2e-303 1045.0 602 91.4
Psat3g117200 Pisum sativum HOM05D004172 ORTHO05D006010 5.3e-302 1040.4 602 90.4
Medtr7g074060 Medicago truncatula HOM05D004172 ORTHO05D006010 3.7e-295 1017.7 602 89.0
arahy.Tifrunner.gnm1.ann1.5JF3JJ Arachis hypogaea HOM05D004172 ORTHO05D006010 6.3e-295 1016.9 601 89.4
TPR.G24292 Trifolium pratense HOM05D004172 ORTHO05D006010 6.3e-295 1016.9 602 88.9
arahy.Tifrunner.gnm1.ann1.VH0VRX Arachis hypogaea HOM05D004172 ORTHO05D006010 1.1e-294 1016.1 601 88.4
arahy.Tifrunner.gnm1.ann1.3N9KBA Arachis hypogaea HOM05D004172 ORTHO05D006010 4.1e-294 1014.2 601 88.7
arahy.Tifrunner.gnm1.ann1.SQ7DBT Arachis hypogaea HOM05D004172 ORTHO05D006010 1.2e-293 1012.7 601 88.9
Ca_07790_v3 Cicer arietinum L. HOM05D004172 ORTHO05D006010 1.0e-292 1009.6 603 87.7
Lalb_Chr07g0195761 Lupinus albus HOM05D004172 ORTHO05D006010 1.7e-292 1008.8 601 88.7
Lalb_Chr01g0023931 Lupinus albus HOM05D004172 ORTHO05D006010 2.1e-282 975.3 603 86.2
Phvul.010G059200 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 4.8e-279 964.1 602 85.9
VMungo0331G1250 Vigna mungo HOM05D004172 ORTHO05D006010 1.7e-276 955.7 601 85.0
RcHm_v2.0_Chr3g0459921 Rosa chinensis HOM05D004172 ORTHO05D006010 6.5e-276 953.7 589 84.0
Prupe.6G297500 Prunus persica HOM05D004172 ORTHO05D006010 4.2e-275 951.0 589 82.5
QL07p031284 Quercus lobata HOM05D004172 ORTHO05D006010 6.1e-274 947.2 598 81.1
QL07p031617 Quercus lobata HOM05D004172 ORTHO05D006010 1.8e-273 945.7 598 80.9
FAN09G2297 Fragaria x ananassa HOM05D004172 ORTHO05D006010 1.3e-271 939.5 589 82.9
FvH4_6g09450 Fragaria vesca HOM05D004172 ORTHO05D006010 3.7e-271 937.9 589 82.7
Cfa017003 Carpinus fangiana HOM05D004172 ORTHO05D006010 8.3e-271 936.8 600 81.2
Manes.09G122000 Manihot esculenta HOM05D004172 ORTHO05D006010 8.3e-271 936.8 595 80.7
MD04G1177600 Malus domestica HOM05D004172 ORTHO05D006010 1.8e-270 935.6 594 81.0
MD12G1192900 Malus domestica HOM05D004172 ORTHO05D006010 1.8e-270 935.6 589 81.3
CANSAT55G0003 Cannabis sativa HOM05D004172 ORTHO05D006010 2.4e-270 935.3 590 81.5
FAN02G3863 Fragaria x ananassa HOM05D004172 ORTHO05D006010 2.4e-270 935.3 589 82.3
FAN14G3054 Fragaria x ananassa HOM05D004172 ORTHO05D006010 3.1e-270 934.9 589 82.5
Sed0001307 Sechium edule HOM05D004172 ORTHO05D006010 5.3e-270 934.1 589 81.7
Manes.08G168300 Manihot esculenta HOM05D004172 ORTHO05D006010 7.0e-270 933.7 589 81.0
Thecc.04G148100 Theobroma cacao HOM05D004172 ORTHO05D006010 1.7e-268 929.1 594 80.6
Cpa.g.sc0.76 Carica papaya HOM05D004172 ORTHO05D006010 3.8e-268 927.9 595 80.0
Eucgr.K01297 Eucalyptus grandis HOM05D004172 ORTHO05D006010 6.5e-268 927.2 589 81.2
Duzib151G0210 Durio zibethinus HOM05D004172 ORTHO05D006010 7.2e-267 923.7 587 80.9
ClCG04G006210 Citrullus lanatus HOM05D004172 ORTHO05D006010 9.4e-267 923.3 591 80.7
CsaV3_4G027360 Cucumis sativus L. HOM05D004172 ORTHO05D006010 9.4e-267 923.3 599 79.8
MELO3C025255.2 Cucumis melo HOM05D004172 ORTHO05D006010 6.1e-266 920.6 599 80.0
PGR004G2490 Punica granatum HOM05D004172 ORTHO05D006010 6.1e-266 920.6 595 80.7
Potri.006G111200 Populus trichocarpa HOM05D004172 ORTHO05D006010 1.3e-263 912.9 588 79.9
Gohir.A02G001800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 1.7e-263 912.5 586 80.5
TWI53G0780 Tripterygium wilfordii HOM05D004172 ORTHO05D006010 2.8e-263 911.8 589 81.3
CiPaw.10G166300 Carya illinoinensis HOM05D004172 ORTHO05D006010 3.1e-262 908.3 563 82.4
Gohir.D10G113800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 3.5e-261 904.8 594 79.1
Gorai.011G125600 Gossypium raimondii HOM05D004172 ORTHO05D006010 4.5e-261 904.4 594 79.3
Gohir.A10G152400 Gossypium hirsutum HOM05D004172 ORTHO05D006010 7.7e-261 903.7 594 78.8
Haze_21203 Corylus avellana HOM05D004172 ORTHO05D006010 1.3e-260 902.9 699 69.8
Ciclev10011331m.g Citrus clementina HOM05D004172 ORTHO05D006010 2.9e-260 901.7 589 80.6
Gohir.D02G002100 Gossypium hirsutum HOM05D004172 ORTHO05D006010 5.0e-260 901.0 587 79.9
Gorai.005G002600 Gossypium raimondii HOM05D004172 ORTHO05D006010 8.6e-260 900.2 587 79.9
Dinv16944 Davidia involucrata HOM05D004172 ORTHO05D006010 4.2e-259 897.9 591 78.5
Atru.chr8.66 Acer truncatum HOM05D004172 ORTHO05D006010 1.7e-255 885.9 589 79.1
Dinv21399 Davidia involucrata HOM05D004172 ORTHO05D006010 2.2e-255 885.6 589 77.8
THA.LOC104806653 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 4.1e-254 881.3 596 75.8
Sabra04G0157100 Salix brachista HOM05D004172 ORTHO05D006010 2.0e-253 879.0 637 72.8
BolC3t16675H Brassica oleracea HOM05D004172 ORTHO05D006010 4.5e-253 877.9 595 76.0
Carub.0003s0778 Capsella rubella HOM05D004172 ORTHO05D006010 4.5e-253 877.9 593 75.9
CARHR082950 Cardamine hirsuta HOM05D004172 ORTHO05D006010 4.5e-253 877.9 595 76.1
AT3G08650 Arabidopsis thaliana HOM05D004172 ORTHO05D006010 5.9e-253 877.5 591 76.8
Thhalv10020349m.g Eutrema salsugineum HOM05D004172 ORTHO05D006010 5.9e-253 877.5 595 76.1
Sabra06G0086400 Salix brachista HOM05D004172 ORTHO05D006010 5.9e-253 877.5 702 67.5
BraA03t12811Z Brassica rapa HOM05D004172 ORTHO05D006010 7.8e-253 877.1 589 76.6
CSS0013897 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 1.0e-252 876.7 595 76.5
A03p36430 Brassica napus HOM05D004172 ORTHO05D006010 1.3e-252 876.3 589 76.7
Rhsim04G0120600 Rhododendron simsii HOM05D004172 ORTHO05D006010 1.3e-252 876.3 589 77.8
Sp3g07090 Schrenkiella parvula HOM05D004172 ORTHO05D006010 8.6e-252 873.6 595 75.6
Hma1.2p1_0106F.1_g051180 Hydrangea macrophylla HOM05D004172 ORTHO05D006010 1.9e-251 872.5 589 76.1
THA.LOC104823330 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 2.5e-251 872.1 593 76.1
AL3G19650 Arabidopsis lyrata HOM05D004172 ORTHO05D006010 3.3e-251 871.7 593 75.4
BNapus_Darmor_BZH_scaffold_167p00070 Brassica napus HOM05D004172 ORTHO05D006010 1.0e-249 866.7 597 75.2
BcaC09g47981 Brassica carinata HOM05D004172 ORTHO05D006010 2.3e-249 865.5 597 75.2
BolC1t05497H Brassica oleracea HOM05D004172 ORTHO05D006010 3.1e-249 865.1 598 75.1
Aqoxy4G03306 Aquilegia oxysepala HOM05D004172 ORTHO05D006010 5.8e-248 860.9 574 77.7
BcaB04g21247 Brassica carinata HOM05D004172 ORTHO05D006010 7.5e-248 860.5 597 74.7
Aa31LG5G18700 Aethionema arabicum HOM05D004172 ORTHO05D006010 2.2e-247 859.0 593 75.4
A05p40120 Brassica napus HOM05D004172 ORTHO05D006010 6.4e-247 857.4 579 75.8
C05p59200 Brassica napus HOM05D004172 ORTHO05D006010 3.2e-246 855.1 579 75.8
BolC5t34577H Brassica oleracea HOM05D004172 ORTHO05D006010 4.1e-246 854.7 590 75.1
GSVIVG01029868001 Vitis vinifera HOM05D004172 ORTHO05D006010 2.0e-245 852.4 508 84.3
BcaC01g04188 Brassica carinata HOM05D004172 ORTHO05D006010 4.6e-245 851.3 595 74.6
Sc20g0007210 Simmondsia chinensis HOM05D004172 ORTHO05D006010 7.8e-245 850.5 594 73.7
Nn5g26794 Nelumbo nucifera HOM05D004172 ORTHO05D006010 5.0e-244 847.8 567 76.5
Peaxi162Scf00019g00011 Petunia axillaris HOM05D004172 ORTHO05D006010 1.1e-243 846.7 586 75.1
MSTRG.5032 Avicennia marina HOM05D004172 ORTHO05D006010 2.5e-243 845.5 595 73.3
BcaC05g29600 Brassica carinata HOM05D004172 ORTHO05D006010 1.2e-242 843.2 579 75.3
Lj7P587T8 Lonicera japonica HOM05D004172 ORTHO05D006010 3.6e-242 841.6 597 74.5
MBI15_g31039_MAGBIO Magnolia biondii HOM05D004172 ORTHO05D006010 6.2e-242 840.9 588 75.3
TAR633G1329 Trochodendron aralioides HOM05D004172 ORTHO05D006010 8.0e-242 840.5 575 76.9
DCAR_029461 Daucus carota HOM05D004172 ORTHO05D006010 1.1e-241 840.1 591 74.5
Nitab4.5_0006228g0020 Nicotiana tabacum HOM05D004172 ORTHO05D006010 1.1e-241 840.1 566 76.5
Nitab4.5_0000707g0290 Nicotiana tabacum HOM05D004172 ORTHO05D006010 4.0e-241 838.2 590 73.6
SalBow6G2214 Salvia bowleyana HOM05D004172 ORTHO05D006010 5.2e-241 837.8 595 72.6
AUR62029801 Chenopodium quinoa HOM05D004172 ORTHO05D006010 6.8e-241 837.4 590 72.7
Solyc01g087530.3 Solanum lycopersicum HOM05D004172 ORTHO05D006010 1.3e-239 833.2 598 73.4
Sopen01g034500 Solanum pennellii HOM05D004172 ORTHO05D006010 1.3e-239 833.2 598 73.4
PGSC0003DMG400006857 Solanum tuberosum HOM05D004172 ORTHO05D006010 2.2e-239 832.4 590 73.9
Oeu006559.1 Olea europaea HOM05D004172 ORTHO05D006010 1.4e-238 829.7 609 71.9
ECA248G2273 Erigeron canadensis HOM05D004172 ORTHO05D006010 2.4e-238 828.9 600 72.2
PSO017G1041 Papaver somniferum HOM05D004172 ORTHO05D006010 4.1e-238 828.2 574 76.3
PSO170G1455 Papaver somniferum HOM05D004172 ORTHO05D006010 2.7e-237 825.5 574 76.0
CAN.G219.48 Capsicum annuum HOM05D004172 ORTHO05D006010 3.5e-237 825.1 601 72.9
Ah.15g089820 Amaranthus hybridus HOM05D004172 ORTHO05D006010 2.3e-236 822.4 587 71.4
AUR62006448 Chenopodium quinoa HOM05D004172 ORTHO05D006010 2.3e-236 822.4 590 72.0
Actinidia20804 Actinidia chinensis HOM05D004172 ORTHO05D006010 3.0e-236 822.0 589 74.2
EL10Ac7g17137 Beta vulgaris HOM05D004172 ORTHO05D006010 1.9e-235 819.3 591 71.4
PSO502G0022 Papaver somniferum HOM05D004172 ORTHO05D006010 7.3e-235 817.4 574 75.4
Hund03687 Selenicereus undatus HOM05D004172 ORTHO05D006010 7.3e-235 817.4 602 71.4
Cc02_g28240 Coffea canephora HOM05D004172 ORTHO05D006010 4.0e-233 811.6 511 79.8
Migut.N01780 Erythranthe guttata HOM05D004172 ORTHO05D006010 4.4e-232 808.1 593 72.2
TAR636G0443 Trochodendron aralioides HOM05D004172 ORTHO05D006010 2.8e-226 788.9 599 70.8
Oeu049006.1 Olea europaea HOM05D004172 ORTHO05D006010 1.1e-222 776.9 591 69.5
CDE09G1233 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 9.6e-219 763.8 572 70.3
ATR1127G216 Amborella trichopoda HOM05D004172 ORTHO05D006010 6.2e-218 761.1 566 71.6
Os05g0316100 Oryza sativa ssp. japonica HOM05D004172 ORTHO05D006010 9.9e-216 753.8 524 73.5
SHI12946 Sapria himalayana HOM05D004172 ORTHO05D006010 7.8e-213 744.2 590 66.6
HPP92_026424 Vanilla planifolia HOM05D004172 ORTHO05D006010 7.3e-211 737.6 592 67.9
Potri.016G140500 Populus trichocarpa HOM05D004172 ORTHO05D006010 9.0e-209 730.7 601 65.6
Lsat_1_v5_gn_1_105840 Lactuca sativa HOM05D004172 ORTHO05D006010 1.2e-205 720.3 600 65.7
Zm00001eb408330 Zea mays HOM05D004172 ORTHO05D006010 2.0e-200 703.0 524 70.0
unitig_747.g21293 Utricularia gibba HOM05D004172 ORTHO05D006010 9.7e-187 657.5 501 69.5
CDE08G0114 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 1.7e-183 646.7 448 75.7
HanXRQChr01g0016071 Helianthus annuus HOM05D004172 ORTHO05D006010 2.7e-181 639.4 433 77.1
SEGI_23896 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 1.4e-177 627.1 478 67.4
vmacro08954 Vaccinium macrocarpon HOM05D004172 ORTHO05D006010 2.9e-175 619.4 507 67.7
C03p44040 Brassica napus HOM05D004172 ORTHO05D006010 2.1e-165 586.6 375 81.9
SMO337G0001 Selaginella moellendorffii HOM05D004172 ORTHO05D006010 1.8e-164 583.6 534 60.5
CiPaw.09G223100 Carya illinoinensis HOM05D004172 ORTHO05D006010 7.0e-161 571.6 578 59.7
BraA01t04334Z Brassica rapa HOM05D004172 ORTHO05D006010 8.8e-156 554.7 372 75.3
Pp3c6_18720 Physcomitrium patens HOM05D004172 ORTHO05D006010 1.6e-144 517.3 522 53.6
Actinidia32576 Actinidia chinensis HOM05D004172 ORTHO05D006010 1.9e-134 483.8 400 66.2
SGA_v2.0_scaffold5G02963 Striga asiatica HOM05D004172 ORTHO05D006010 4.9e-130 469.2 317 77.0
CSS0016172 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 3.9e-119 433.0 309 73.5
COL.COLO4_05675 Corchorus olitorius HOM05D004172 ORTHO05D006010 2.3e-116 423.7 252 86.5
Mapoly0092s0078 Marchantia polymorpha HOM05D004172 ORTHO05D006010 2.1e-112 410.6 520 48.3
CBR_g164 Chara braunii HOM05D004172 ORTHO05D006010 4.2e-97 359.8 572 42.0
BcaB04g18578 Brassica carinata HOM05D004172 ORTHO05D006010 5.4e-97 359.4 229 79.9
Actinidia28546 Actinidia chinensis HOM05D004172 ORTHO05D006010 2.2e-90 337.4 229 75.5
SEGI_22351 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 2.3e-79 300.8 202 75.2
C03p44050 Brassica napus HOM05D004172 ORTHO05D006010 5.3e-76 289.7 210 67.6
MCO09G526 Micromonas commoda HOM05D004172 ORTHO05D006010 1.1e-65 255.4 257 53.3
Cre06.g281900 Chlamydomonas reinhardtii HOM05D004172 ORTHO05D006010 4.5e-59 233.4 321 41.1
Medtr3g094870 Medicago truncatula HOM05D004172 ORTHO05D006010 9.7e-54 215.7 132 83.3
PRCOL_00003523 Prasinoderma coloniale HOM05D004172 ORTHO05D006010 6.1e-48 196.4 266 45.5
CSS0001306 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D000002 1.5e-41 175.3 131 67.9
HanXRQChr04g0127351 Helianthus annuus HOM05D004172 ORTHO05D006010 2.3e-31 141.4 137 57.7
RcHm_v2.0_Chr3g0459981 Rosa chinensis HOM05D004172 ORTHO05D018193 2.4e-28 131.3 103 68.0
QL07p004777 Quercus lobata HOM05D004172 ORTHO05D039478 1.7e-26 125.2 186 42.5
RcHm_v2.0_Chr3g0460031 Rosa chinensis HOM05D004172 ORTHO05D018193 1.1e-25 122.5 101 65.3
SEGI_04146 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 1.0e-23 115.9 207 39.6
C02p50100 Brassica napus HOM05D004172 ORTHO05D018193 1.9e-17 95.1 52 90.4
BolC2t11086H Brassica oleracea HOM05D004172 ORTHO05D018193 1.9e-17 95.1 52 90.4
Actinidia32575 Actinidia chinensis HOM05D004172 ORTHO05D006010 3.3e-17 94.4 50 84.0
BcaC02g10326 Brassica carinata HOM05D004172 ORTHO05D023965 1.2e-14 85.9 81 56.8
HanXRQChr11g0335241 Helianthus annuus HOM05D004172 ORTHO05D006010 2.0e-14 85.1 52 82.7
SEGI_20309 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 1.2e-11 75.9 60 63.3
BolC4t24562H Brassica oleracea HOM05D004172 ORTHO05D023965 2.5e-09 68.2 74 50.0
C04p30290 Brassica napus HOM05D004172 ORTHO05D023965 3.3e-09 67.8 74 50.0
C01p21620 Brassica napus HOM05D004172 ORTHO05D023965 2.1e-08 65.1 74 48.6
C03p65240 Brassica napus HOM05D004172 ORTHO05D018193 2.1e-08 65.1 30 93.3
BolC3t18777H Brassica oleracea HOM05D004172 ORTHO05D018193 2.1e-08 65.1 30 93.3
TAR633G1452 Trochodendron aralioides HOM05D004172 ORTHO05D414170 3.6e-08 64.3 57 52.6
Actinidia28545 Actinidia chinensis HOM05D004172 ORTHO05D018193 1.5e-06 58.9 84 45.2
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 1.5e-06 58.9 250 28.4
BcaC07g38378 Brassica carinata HOM05D004172 ORTHO05D039478 2.0e-06 58.5 51 43.1
BcaC09g50722 Brassica carinata HOM05D004172 ORTHO05D023965 3.4e-06 57.8 57 52.6
COL.COLO4_16027 Corchorus olitorius HOM05D004172 ORTHO05D159660 4.4e-06 57.4 51 66.7


User provided reference genes

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