Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G203900 Glycine max HOM05D004746 ORTHO05D005863 0.0e+00 1971.1 1010 100.0
Phvul.008G095700 Phaseolus vulgaris HOM05D004746 ORTHO05D005863 0.0e+00 1909.4 1008 96.4
Glyma.07G152800 Glycine max HOM05D004746 ORTHO05D005863 0.0e+00 1909.0 1009 96.9
VMungo1383G1310 Vigna mungo HOM05D004746 ORTHO05D005863 0.0e+00 1905.6 1008 96.2
Psat3g125960 Pisum sativum HOM05D004746 ORTHO05D005863 0.0e+00 1833.9 1008 92.4
Ca_07663_v3 Cicer arietinum L. HOM05D004746 ORTHO05D005863 0.0e+00 1832.8 1008 92.2
Lj1g0027952 Lotus japonicus HOM05D004746 ORTHO05D005863 0.0e+00 1830.1 1008 92.2
TPR.G35441 Trifolium pratense HOM05D004746 ORTHO05D005863 0.0e+00 1817.0 1008 91.4
Medtr7g069460 Medicago truncatula HOM05D004746 ORTHO05D005863 0.0e+00 1802.3 1008 90.7
arahy.Tifrunner.gnm1.ann1.R9K5QN Arachis hypogaea HOM05D004746 ORTHO05D005863 0.0e+00 1774.6 1008 89.5
Lalb_Chr19g0124371 Lupinus albus HOM05D004746 ORTHO05D005863 0.0e+00 1774.6 1010 89.8
arahy.Tifrunner.gnm1.ann1.U1NNDF Arachis hypogaea HOM05D004746 ORTHO05D005863 0.0e+00 1747.6 1008 88.3
Manes.09G106500 Manihot esculenta HOM05D004746 ORTHO05D005863 0.0e+00 1636.3 1010 81.2
Atru.chr8.2277 Acer truncatum HOM05D004746 ORTHO05D005863 0.0e+00 1631.3 1010 81.0
Ciclev10010971m.g Citrus clementina HOM05D004746 ORTHO05D005863 0.0e+00 1627.1 1010 80.9
Thecc.05G012200 Theobroma cacao HOM05D004746 ORTHO05D005863 0.0e+00 1615.9 1011 80.1
QL07p034923 Quercus lobata HOM05D004746 ORTHO05D005863 0.0e+00 1607.8 1010 80.9
FvH4_4g00010 Fragaria vesca HOM05D004746 ORTHO05D005863 0.0e+00 1606.3 1011 79.5
Duzib093G0324 Durio zibethinus HOM05D004746 ORTHO05D005863 0.0e+00 1604.7 1010 79.6
Duzib128G0341 Durio zibethinus HOM05D004746 ORTHO05D005863 0.0e+00 1600.1 1009 79.5
Potri.016G119900 Populus trichocarpa HOM05D004746 ORTHO05D005863 0.0e+00 1599.7 1010 79.4
Gorai.012G116700 Gossypium raimondii HOM05D004746 ORTHO05D005863 0.0e+00 1584.3 1010 78.1
Gohir.D04G132800 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1583.2 1010 78.2
CSS0006394 Camellia sinensis var. sinensis HOM05D004746 ORTHO05D005863 0.0e+00 1582.8 1009 79.0
TWI74G1023 Tripterygium wilfordii HOM05D004746 ORTHO05D005863 0.0e+00 1582.0 1039 76.5
CSS0013285 Camellia sinensis var. sinensis HOM05D004746 ORTHO05D005863 0.0e+00 1579.7 1009 78.9
Gohir.A04G093500 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1578.1 1010 77.9
Gorai.002G262500 Gossypium raimondii HOM05D004746 ORTHO05D005863 0.0e+00 1575.1 1010 77.8
Gohir.A01G226580 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1572.0 1013 77.7
PGR031G3962 Punica granatum HOM05D004746 ORTHO05D005863 0.0e+00 1572.0 1008 77.6
FAN22G0460 Fragaria x ananassa HOM05D004746 ORTHO05D005863 0.0e+00 1562.0 1016 77.8
FAN17G1409 Fragaria x ananassa HOM05D004746 ORTHO05D005863 0.0e+00 1561.2 1016 77.7
THA.LOC104823290 Tarenaya hassleriana HOM05D004746 ORTHO05D005863 0.0e+00 1552.0 1009 76.4
Eucgr.A00543 Eucalyptus grandis HOM05D004746 ORTHO05D005863 0.0e+00 1551.2 1008 76.2
Aa31LG5G18930 Aethionema arabicum HOM05D004746 ORTHO05D005863 0.0e+00 1547.3 1009 75.6
AL3G19980 Arabidopsis lyrata HOM05D004746 ORTHO05D005863 0.0e+00 1545.0 1009 76.1
Thhalv10019980m.g Eutrema salsugineum HOM05D004746 ORTHO05D005863 0.0e+00 1543.1 1009 76.1
Nn2g10907 Nelumbo nucifera HOM05D004746 ORTHO05D005863 0.0e+00 1540.8 1015 76.6
A05p39880 Brassica napus HOM05D004746 ORTHO05D005863 0.0e+00 1537.3 1009 75.5
Actinidia11569 Actinidia chinensis HOM05D004746 ORTHO05D005863 0.0e+00 1535.8 1011 76.3
AT3G08960 Arabidopsis thaliana HOM05D004746 ORTHO05D005863 0.0e+00 1535.4 1009 76.1
C05p58920 Brassica napus HOM05D004746 ORTHO05D005863 0.0e+00 1534.6 1009 75.3
BolC5t34545H Brassica oleracea HOM05D004746 ORTHO05D005863 0.0e+00 1534.6 1009 75.2
BraSC256t45936Z Brassica rapa HOM05D004746 ORTHO05D005863 0.0e+00 1533.9 1009 75.3
Sp3g07380 Schrenkiella parvula HOM05D004746 ORTHO05D005863 0.0e+00 1532.3 1009 75.0
BolC3t16657H Brassica oleracea HOM05D004746 ORTHO05D005863 0.0e+00 1531.5 1010 75.3
C03p43890 Brassica napus HOM05D004746 ORTHO05D005863 0.0e+00 1531.2 1010 75.2
A03p36250 Brassica napus HOM05D004746 ORTHO05D005863 0.0e+00 1520.8 1010 74.9
BraA03t12796Z Brassica rapa HOM05D004746 ORTHO05D005863 0.0e+00 1518.8 1010 74.7
Carub.0003s0809 Capsella rubella HOM05D004746 ORTHO05D005863 0.0e+00 1517.7 1009 75.0
CANSAT56G3938 Cannabis sativa HOM05D004746 ORTHO05D005863 0.0e+00 1516.9 1011 76.3
Gohir.D01G216252 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1514.2 1009 75.8
Sed0023855 Sechium edule HOM05D004746 ORTHO05D005863 0.0e+00 1510.7 1013 75.1
CsaV3_3G021150 Cucumis sativus L. HOM05D004746 ORTHO05D005863 0.0e+00 1510.0 1013 75.0
EL10Ac5g12532 Beta vulgaris HOM05D004746 ORTHO05D005863 0.0e+00 1508.0 1011 74.3
Cc06_g01090 Coffea canephora HOM05D004746 ORTHO05D005863 0.0e+00 1503.8 1011 74.3
Sopen09g001110 Solanum pennellii HOM05D004746 ORTHO05D005863 0.0e+00 1503.4 1009 74.3
MELO3C020253.2 Cucumis melo HOM05D004746 ORTHO05D005863 0.0e+00 1501.5 1013 74.8
PSO339G1342 Papaver somniferum HOM05D004746 ORTHO05D005863 0.0e+00 1493.0 1009 74.2
Oeu033576.1 Olea europaea HOM05D004746 ORTHO05D005863 0.0e+00 1490.7 1071 70.7
vmacro20299 Vaccinium macrocarpon HOM05D004746 ORTHO05D005863 0.0e+00 1489.9 1082 70.2
TWI77G0319 Tripterygium wilfordii HOM05D004746 ORTHO05D005863 0.0e+00 1484.9 1009 74.8
AUR62030473 Chenopodium quinoa HOM05D004746 ORTHO05D005863 0.0e+00 1479.9 1017 72.3
CiPaw.09G211600 Carya illinoinensis HOM05D004746 ORTHO05D005863 0.0e+00 1475.7 1010 75.1
PSO801G0820 Papaver somniferum HOM05D004746 ORTHO05D005863 0.0e+00 1475.7 1009 73.4
Ah.02g115550 Amaranthus hybridus HOM05D004746 ORTHO05D005863 0.0e+00 1473.0 1026 72.0
ECA236G1680 Erigeron canadensis HOM05D004746 ORTHO05D005863 0.0e+00 1472.2 1010 73.7
Lsat_1_v5_gn_8_100840 Lactuca sativa HOM05D004746 ORTHO05D005863 0.0e+00 1471.8 1011 73.6
DCAR_018683 Daucus carota HOM05D004746 ORTHO05D005863 0.0e+00 1467.6 1043 71.1
Migut.J00134 Erythranthe guttata HOM05D004746 ORTHO05D005863 0.0e+00 1463.4 1010 72.8
Cfa017175 Carpinus fangiana HOM05D004746 ORTHO05D005863 0.0e+00 1463.0 914 80.7
HanXRQChr12g0383171 Helianthus annuus HOM05D004746 ORTHO05D005863 0.0e+00 1460.3 1000 73.8
Aqoxy7G03079 Aquilegia oxysepala HOM05D004746 ORTHO05D005863 0.0e+00 1451.0 1011 70.3
Hund10978 Selenicereus undatus HOM05D004746 ORTHO05D005863 0.0e+00 1450.3 1009 71.9
DCAR_015390 Daucus carota HOM05D004746 ORTHO05D005863 0.0e+00 1449.1 1010 71.8
MSTRG.10207 Avicennia marina HOM05D004746 ORTHO05D005863 0.0e+00 1448.0 1009 72.1
Dinv13139 Davidia involucrata HOM05D004746 ORTHO05D005863 0.0e+00 1444.5 914 78.7
Sabra16G0115800 Salix brachista HOM05D004746 ORTHO05D005863 0.0e+00 1441.0 1092 69.1
Oeu063393.2 Olea europaea HOM05D004746 ORTHO05D005863 0.0e+00 1437.2 1144 65.6
Gohir.D01G216126 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1432.2 1025 72.5
SGA_v2.0_scaffold85G26719 Striga asiatica HOM05D004746 ORTHO05D005863 0.0e+00 1431.0 1068 69.1
Actinidia29088 Actinidia chinensis HOM05D004746 ORTHO05D005863 0.0e+00 1429.8 992 73.7
Haze_21030 Corylus avellana HOM05D004746 ORTHO05D005863 0.0e+00 1414.1 1029 73.0
AUR62010444 Chenopodium quinoa HOM05D004746 ORTHO05D005863 0.0e+00 1404.8 1011 70.7
Sc01g0006870 Simmondsia chinensis HOM05D004746 ORTHO05D005863 0.0e+00 1361.3 896 74.3
Peaxi162Scf01132g00141 Petunia axillaris HOM05D004746 ORTHO05D005863 0.0e+00 1352.4 1017 67.8
BcaC01g04209 Brassica carinata HOM05D004746 ORTHO05D005863 0.0e+00 1337.8 1010 67.8
MBI01_g40022_MAGBIO Magnolia biondii HOM05D004746 ORTHO05D005863 0.0e+00 1318.9 961 68.9
ATR0681G361 Amborella trichopoda HOM05D004746 ORTHO05D005863 0.0e+00 1305.8 1016 64.8
unitig_26.g9084 Utricularia gibba HOM05D004746 ORTHO05D005863 0.0e+00 1297.3 1019 65.3
BcaC05g29630 Brassica carinata HOM05D004746 ORTHO05D005863 0.0e+00 1293.9 999 66.9
CARHR083300 Cardamine hirsuta HOM05D004746 ORTHO05D005863 0.0e+00 1290.0 834 75.9
CDE08G1427 Ceratophyllum demersum HOM05D004746 ORTHO05D005863 0.0e+00 1260.4 1018 63.5
HPP92_001120 Vanilla planifolia HOM05D004746 ORTHO05D005863 0.0e+00 1198.3 1018 61.2
Cpa.g.sc120.53 Carica papaya HOM05D004746 ORTHO05D005863 0.0e+00 1191.0 878 70.7
Zm00001eb111960 Zea mays HOM05D004746 ORTHO05D005863 0.0e+00 1162.5 964 61.0
Lj3C949T2 Lonicera japonica HOM05D004746 ORTHO05D005863 0.0e+00 1077.8 824 68.0
SEGI_16247 Sequoiadendron giganteum HOM05D004746 ORTHO05D005863 4.4e-309 1064.7 882 58.7
Nitab4.5_0000195g0230 Nicotiana tabacum HOM05D004746 ORTHO05D005863 5.6e-296 1021.1 726 70.9
MD04G1000200 Malus domestica HOM05D004746 ORTHO05D005863 1.7e-292 1009.6 611 80.4
Mapoly0056s0005 Marchantia polymorpha HOM05D004746 ORTHO05D005863 2.3e-289 999.2 1026 50.4
TAR633G1894 Trochodendron aralioides HOM05D004746 ORTHO05D005863 9.0e-286 987.3 611 79.1
Nitab4.5_0009417g0010 Nicotiana tabacum HOM05D004746 ORTHO05D005863 1.2e-285 986.9 704 71.2
Pp3c2_22550 Physcomitrium patens HOM05D004746 ORTHO05D005863 6.0e-282 974.5 1017 50.0
Pp3c14_210 Physcomitrium patens HOM05D004746 ORTHO05D005863 1.3e-281 973.4 1018 49.8
Prupe.1G000100 Prunus persica HOM05D004746 ORTHO05D005863 5.1e-257 891.7 617 72.9
AagrBONN_evm.TU.Sc2ySwM_362.215 Anthoceros agrestis HOM05D004746 ORTHO05D005863 2.0e-253 879.8 993 47.5
SMO241G0033 Selaginella moellendorffii HOM05D004746 ORTHO05D005863 2.3e-241 839.7 1038 43.7
GSVIVG01003938001 Vitis vinifera HOM05D004746 ORTHO05D005863 6.3e-239 831.6 508 81.5
Dinv16905 Davidia involucrata HOM05D004746 ORTHO05D005863 4.1e-238 828.9 537 76.4
COL.COLO4_14503 Corchorus olitorius HOM05D004746 ORTHO05D005863 8.5e-236 821.2 507 79.5
FAN12G3124 Fragaria x ananassa HOM05D004746 ORTHO05D005863 4.8e-231 805.4 507 78.3
GSVIVG01003936001 Vitis vinifera HOM05D004746 ORTHO05D005863 1.9e-227 793.5 502 80.3
SMO232G0101 Selaginella moellendorffii HOM05D004746 ORTHO05D005863 6.3e-215 751.9 1021 41.5
Os07g0693400 Oryza sativa ssp. japonica HOM05D004746 ORTHO05D005863 3.7e-199 699.5 1018 42.3
ClCG05G011310 Citrullus lanatus HOM05D004746 ORTHO05D005863 9.9e-192 674.9 484 73.8
MD04G1000400 Malus domestica HOM05D004746 ORTHO05D005863 3.8e-167 593.2 393 77.9
Glyma.16G097102 Glycine max HOM05D004746 ORTHO05D005863 1.2e-149 535.0 303 89.1
ClCG05G011270 Citrullus lanatus HOM05D004746 ORTHO05D005863 1.2e-141 508.4 545 52.1
Glyma.16G097152 Glycine max HOM05D004746 ORTHO05D005863 2.2e-138 497.7 280 94.6
Rhsim05G0217800 Rhododendron simsii HOM05D004746 ORTHO05D005863 1.7e-130 471.5 408 60.5
PRCOL_00000669 Prasinoderma coloniale HOM05D004746 ORTHO05D005863 1.7e-127 461.5 1045 30.2
Prupe.1G000300 Prunus persica HOM05D004746 ORTHO05D005863 3.6e-125 453.8 387 64.6
HPP92_001053 Vanilla planifolia HOM05D004746 ORTHO05D005863 3.6e-125 453.8 390 59.2
PGSC0003DMG400006259 Solanum tuberosum HOM05D004746 ORTHO05D005863 9.1e-121 439.1 309 72.8
HPP92_001054 Vanilla planifolia HOM05D004746 ORTHO05D005863 9.4e-118 429.1 404 57.4
Dinv16904 Davidia involucrata HOM05D004746 ORTHO05D005863 5.0e-111 406.8 470 52.3
Cre02.g078885 Chlamydomonas reinhardtii HOM05D004746 ORTHO05D005863 1.9e-102 378.3 1161 27.0
Psat2g043480 Pisum sativum HOM05D004746 ORTHO05D005863 1.9e-102 378.3 232 86.6
Os03g0292900 Oryza sativa ssp. japonica HOM05D004746 ORTHO05D005863 1.4e-84 318.9 302 53.6
CBR_g44564 Chara braunii HOM05D000019 ORTHO05D000048 8.9e-76 289.7 310 46.5
Lsat_1_v5_gn_5_53800 Lactuca sativa HOM05D004746 ORTHO05D005863 3.0e-71 274.6 213 64.3
ClCG05G011300 Citrullus lanatus HOM05D004746 ORTHO05D005863 3.0e-63 248.1 141 84.4
Lj3A949T17 Lonicera japonica HOM05D004746 ORTHO05D005863 2.8e-61 241.5 216 61.6
Glyma.16G097051 Glycine max HOM05D004746 ORTHO05D005863 3.8e-58 231.1 126 95.2
CBR_g44557 Chara braunii HOM05D004746 ORTHO05D005863 1.7e-50 205.7 177 57.6
CDE04G0811 Ceratophyllum demersum HOM05D000083 ORTHO05D000196 1.2e-40 172.9 129 67.4
CAN.G5.2 Capsicum annuum HOM05D004746 ORTHO05D005863 3.5e-40 171.4 132 70.5
Lsat_1_v5_gn_5_87500 Lactuca sativa HOM05D004746 ORTHO05D005863 1.8e-31 142.5 179 48.0
COL.COLO4_14504 Corchorus olitorius HOM05D004746 ORTHO05D005863 1.5e-30 139.4 88 75.0
Psat0ss9382g0120 Pisum sativum HOM05D002370 ORTHO05D003878 4.3e-30 137.9 84 81.0
Psat3g181680 Pisum sativum HOM05D004746 ORTHO05D005863 1.4e-28 132.9 78 85.9
CAN.G5.1 Capsicum annuum HOM05D004746 ORTHO05D005863 2.2e-26 125.6 92 66.3
CBR_g44565 Chara braunii HOM05D004746 ORTHO05D001702 2.2e-26 125.6 183 38.3
Lsat_1_v5_gn_5_55000 Lactuca sativa HOM05D004746 ORTHO05D005863 5.5e-25 120.9 91 63.7
Psat2g086560 Pisum sativum HOM05D004629 ORTHO05D002382 5.5e-25 120.9 68 88.2
CAN.G610.28 Capsicum annuum HOM05D004746 ORTHO05D005863 9.4e-25 120.2 79 74.7
Lj3A949T18 Lonicera japonica HOM05D004746 ORTHO05D005863 1.4e-23 116.3 76 71.1
MD14G1122700 Malus domestica HOM05D000325 ORTHO05D001655 2.8e-21 108.6 121 51.2
Lsat_1_v5_gn_6_87921 Lactuca sativa HOM05D004228 ORTHO05D005137 3.1e-20 105.1 95 61.1
SEGI_11102 Sequoiadendron giganteum HOM05D004746 ORTHO05D005863 4.2e-17 94.7 130 43.1
SalBow5G0496 Salvia bowleyana HOM05D004746 ORTHO05D005863 1.0e-15 90.1 61 65.6
FAN17G0995 Fragaria x ananassa HOM05D004746 ORTHO05D005863 1.4e-15 89.7 58 74.1
CBR_g44559 Chara braunii HOM05D000019 ORTHO05D000353 2.8e-13 82.0 99 44.4
Cre02.g084650 Chlamydomonas reinhardtii HOM05D004746 ORTHO05D146592 1.1e-12 80.1 562 21.2
Cpa.g.sc120.51 Carica papaya HOM05D004746 ORTHO05D005863 3.8e-10 71.6 47 76.6
MBI01_g36267_MAGBIO Magnolia biondii HOM05D004746 ORTHO05D005863 3.8e-10 71.6 45 73.3
Psat0s1759g0080 Pisum sativum HOM05D001955 ORTHO05D001917 3.8e-10 71.6 39 84.6
AL1G39580 Arabidopsis lyrata HOM05D001046 ORTHO05D005883 9.4e-09 67.0 121 33.9
CAN.G740.7 Capsicum annuum HOM05D004746 ORTHO05D005863 2.1e-08 65.9 47 70.2
AT1G26170 Arabidopsis thaliana HOM05D001046 ORTHO05D005883 3.6e-08 65.1 121 33.1
Mapoly0014s0213 Marchantia polymorpha HOM05D002786 ORTHO05D003493 1.0e-07 63.5 174 28.2
Zm00001eb184170 Zea mays HOM05D005341 ORTHO05D006712 1.0e-07 63.5 44 61.4
CARHR025740 Cardamine hirsuta HOM05D001046 ORTHO05D005883 2.3e-07 62.4 159 32.1
Sp1g22490 Schrenkiella parvula HOM05D001046 ORTHO05D005883 2.3e-07 62.4 121 32.2
A07p12760 Brassica napus HOM05D001046 ORTHO05D005883 3.0e-07 62.0 138 30.4
ECA233G2610 Erigeron canadensis HOM05D002786 ORTHO05D003493 3.3e-06 58.5 192 24.5
Oeu013400.2 Olea europaea HOM05D002786 ORTHO05D010194 4.4e-06 58.2 222 24.8
Ah.02g115110 Amaranthus hybridus HOM05D002786 ORTHO05D003493 5.7e-06 57.8 153 28.8


User provided reference genes

Program Settings