Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G196300 Glycine max HOM05D006952 ORTHO05D008687 2.6e-135 485.3 234 100.0
Glyma.07G144600 Glycine max HOM05D006952 ORTHO05D008687 2.3e-59 233.0 116 94.8
Phvul.008G108100 Phaseolus vulgaris HOM05D006952 ORTHO05D008687 5.1e-59 231.9 113 94.7
VMungo1383G2957 Vigna mungo HOM05D006952 ORTHO05D008687 8.7e-59 231.1 113 94.7
arahy.Tifrunner.gnm1.ann1.ES8MJM Arachis hypogaea HOM05D006952 ORTHO05D008687 1.4e-56 223.8 113 91.2
arahy.Tifrunner.gnm1.ann1.EMW6YX Arachis hypogaea HOM05D006952 ORTHO05D008687 1.2e-55 220.7 112 90.2
Cfa017257 Carpinus fangiana HOM05D006952 ORTHO05D008687 1.5e-55 220.3 113 90.3
Haze_20948 Corylus avellana HOM05D006952 ORTHO05D008687 1.5e-55 220.3 113 90.3
Lalb_Chr03g0042961 Lupinus albus HOM05D006952 ORTHO05D008687 1.0e-54 217.6 113 87.6
CiPaw.10G154300 Carya illinoinensis HOM05D006952 ORTHO05D008687 1.3e-54 217.2 113 89.4
CANSAT35G1060 Cannabis sativa HOM05D006952 ORTHO05D008687 5.0e-54 215.3 113 85.0
Cpa.g.sc56.113 Carica papaya HOM05D006952 ORTHO05D008687 6.5e-54 214.9 113 88.5
Prupe.6G270600 Prunus persica HOM05D006952 ORTHO05D008687 1.9e-53 213.4 113 85.8
Nn2g11358 Nelumbo nucifera HOM05D006952 ORTHO05D008687 4.2e-53 212.2 113 85.0
Phvul.010G008400 Phaseolus vulgaris HOM05D006952 ORTHO05D008687 5.5e-53 211.8 113 87.6
Ciclev10013166m.g Citrus clementina HOM05D006952 ORTHO05D008687 1.6e-52 210.3 113 88.5
MELO3C009193.2 Cucumis melo HOM05D006952 ORTHO05D008687 1.6e-52 210.3 113 85.0
Lalb_Chr19g0124771 Lupinus albus HOM05D006952 ORTHO05D008687 7.9e-52 208.0 113 85.0
PGR031G1789 Punica granatum HOM05D006952 ORTHO05D008687 7.9e-52 208.0 113 85.0
CsaV3_3G034170 Cucumis sativus L. HOM05D006952 ORTHO05D008687 1.3e-51 207.2 113 82.3
Duzib128G2003 Durio zibethinus HOM05D006952 ORTHO05D008687 1.8e-51 206.8 113 85.8
Lj3g0025387 Lotus japonicus HOM05D006952 ORTHO05D008687 2.3e-51 206.5 113 85.0
TAR636G2834 Trochodendron aralioides HOM05D006952 ORTHO05D008687 2.3e-51 206.5 113 84.1
Sed0014444 Sechium edule HOM05D006952 ORTHO05D008687 3.9e-51 205.7 113 82.3
TPR.G1575 Trifolium pratense HOM05D006952 ORTHO05D008687 3.9e-51 205.7 113 85.0
CiPaw.09G205900 Carya illinoinensis HOM05D006952 ORTHO05D008687 6.7e-51 204.9 113 82.3
Psat0s1978g0040 Pisum sativum HOM05D006952 ORTHO05D008687 8.7e-51 204.5 113 84.1
Thecc.05G022400 Theobroma cacao HOM05D006952 ORTHO05D008687 2.5e-50 203.0 113 84.1
Glyma.03G077100 Glycine max HOM05D006952 ORTHO05D008687 9.7e-50 201.1 113 82.3
Gohir.D09G158700 Gossypium hirsutum HOM05D006952 ORTHO05D008687 1.3e-49 200.7 113 82.3
Gorai.006G180400 Gossypium raimondii HOM05D006952 ORTHO05D008687 1.3e-49 200.7 113 82.3
Medtr7g066800 Medicago truncatula HOM05D006952 ORTHO05D008687 1.3e-49 200.7 113 81.4
Duzib093G2046 Durio zibethinus HOM05D006952 ORTHO05D008687 1.6e-49 200.3 113 83.2
Atru.chr8.2194 Acer truncatum HOM05D006952 ORTHO05D008687 2.8e-49 199.5 113 80.5
Cc06_g01680 Coffea canephora HOM05D006952 ORTHO05D008687 3.7e-49 199.1 113 81.4
Glyma.01G111500 Glycine max HOM05D006952 ORTHO05D008687 1.4e-48 197.2 113 81.4
Hma1.2p1_0763F.1_g214620 Hydrangea macrophylla HOM05D006952 ORTHO05D008687 2.4e-48 196.4 113 81.4
MSTRG.19031 Avicennia marina HOM05D006952 ORTHO05D008687 3.1e-48 196.1 113 80.5
Potri.016G110900 Populus trichocarpa HOM05D006952 ORTHO05D008687 3.1e-48 196.1 113 82.3
Gohir.A09G163200 Gossypium hirsutum HOM05D006952 ORTHO05D008687 5.3e-48 195.3 113 81.4
Eucgr.B02782 Eucalyptus grandis HOM05D006952 ORTHO05D008687 1.5e-47 193.7 116 77.6
MSTRG.5599 Avicennia marina HOM05D006952 ORTHO05D008687 2.0e-47 193.4 113 77.0
Nn2g13603 Nelumbo nucifera HOM05D006952 ORTHO05D008687 2.0e-47 193.4 110 78.2
ATR0618G178 Amborella trichopoda HOM05D006952 ORTHO05D008687 2.6e-47 193.0 113 77.9
PGSC0003DMG400020322 Solanum tuberosum HOM05D006952 ORTHO05D008687 4.5e-47 192.2 113 79.6
Aqoxy1G00719 Aquilegia oxysepala HOM05D006952 ORTHO05D008687 5.9e-47 191.8 111 76.6
Manes.08G087500 Manihot esculenta HOM05D006952 ORTHO05D008687 5.9e-47 191.8 113 80.5
Sopen09g007000 Solanum pennellii HOM05D006952 ORTHO05D008687 7.7e-47 191.4 113 78.8
TAR369G0842 Trochodendron aralioides HOM05D006952 ORTHO05D008687 7.7e-47 191.4 113 80.5
Duzib106G1795 Durio zibethinus HOM05D006952 ORTHO05D008687 1.3e-46 190.7 113 80.5
TWI77G0025 Tripterygium wilfordii HOM05D006952 ORTHO05D008687 1.3e-46 190.7 113 79.6
PSO339G3931 Papaver somniferum HOM05D006952 ORTHO05D008687 2.9e-46 189.5 113 74.3
Migut.J00227 Erythranthe guttata HOM05D006952 ORTHO05D008687 5.0e-46 188.7 113 75.2
CAN.G355.18 Capsicum annuum HOM05D006952 ORTHO05D008687 6.5e-46 188.3 114 77.2
Manes.09G102000 Manihot esculenta HOM05D006952 ORTHO05D008687 6.5e-46 188.3 113 82.3
Oeu015014.1 Olea europaea HOM05D006952 ORTHO05D008687 6.5e-46 188.3 113 78.8
RcHm_v2.0_Chr3g0463891 Rosa chinensis HOM05D006952 ORTHO05D008687 8.5e-46 188.0 108 79.6
Potri.006G096200 Populus trichocarpa HOM05D006952 ORTHO05D008687 1.1e-45 187.6 113 78.8
Sed0025859 Sechium edule HOM05D006952 ORTHO05D008687 1.1e-45 187.6 109 78.0
Potri.004G103400 Populus trichocarpa HOM05D006952 ORTHO05D008687 1.9e-45 186.8 113 79.6
MBI14_g32939_MAGBIO Magnolia biondii HOM05D006952 ORTHO05D008687 3.2e-45 186.0 113 76.1
Oeu030529.1 Olea europaea HOM05D006952 ORTHO05D008687 4.2e-45 185.7 110 80.0
DCAR_024036 Daucus carota HOM05D006952 ORTHO05D008687 2.1e-44 183.3 113 74.3
DCAR_024037 Daucus carota HOM05D006952 ORTHO05D008687 2.1e-44 183.3 113 74.3
SalBow5G3631 Salvia bowleyana HOM05D006952 ORTHO05D008687 2.7e-44 183.0 113 77.0
MD04G1146800 Malus domestica HOM05D006952 ORTHO05D008687 3.6e-44 182.6 108 77.8
PSO384G3323 Papaver somniferum HOM05D006952 ORTHO05D008687 4.6e-44 182.2 113 72.6
Carub.0003s0825 Capsella rubella HOM05D006952 ORTHO05D008687 6.1e-44 181.8 111 74.8
THA.LOC104816220 Tarenaya hassleriana HOM05D006952 ORTHO05D008687 7.9e-44 181.4 108 77.8
TWI74G1053 Tripterygium wilfordii HOM05D006952 ORTHO05D008687 1.4e-43 180.6 113 77.0
Hma1.2p1_0244F.1_g101210 Hydrangea macrophylla HOM05D006952 ORTHO05D008687 1.8e-43 180.3 108 76.9
AL3G20160 Arabidopsis lyrata HOM05D006952 ORTHO05D008687 2.3e-43 179.9 111 73.0
FAN09G1020 Fragaria x ananassa HOM05D006952 ORTHO05D008687 6.7e-43 178.3 107 75.7
Solyc09g013140.3 Solanum lycopersicum HOM05D006952 ORTHO05D008687 6.7e-43 178.3 108 76.9
AT3G09085 Arabidopsis thaliana HOM05D006952 ORTHO05D008687 1.5e-42 177.2 111 73.0
BraA01t04315Z Brassica rapa HOM05D006952 ORTHO05D008687 2.0e-42 176.8 110 76.4
Actinidia05346 Actinidia chinensis HOM05D006952 ORTHO05D008687 2.6e-42 176.4 103 78.6
BcaC09g48008 Brassica carinata HOM05D006952 ORTHO05D008687 2.6e-42 176.4 110 75.5
BcaC09g48053 Brassica carinata HOM05D006952 ORTHO05D008687 2.6e-42 176.4 110 76.4
Sp3g07540 Schrenkiella parvula HOM05D006952 ORTHO05D008687 3.3e-42 176.0 111 73.0
BolC1t05474H Brassica oleracea HOM05D006952 ORTHO05D008687 7.4e-42 174.9 110 75.5
CARHR083460 Cardamine hirsuta HOM05D006952 ORTHO05D008687 9.7e-42 174.5 111 72.1
Thhalv10021991m.g Eutrema salsugineum HOM05D006952 ORTHO05D008687 1.3e-41 174.1 111 72.1
HanXRQChr13g0406321 Helianthus annuus HOM05D006952 ORTHO05D008687 1.7e-41 173.7 112 72.3
SMO116G0119 Selaginella moellendorffii HOM05D006952 ORTHO05D008687 3.7e-41 172.6 113 69.9
TPR.G5256 Trifolium pratense HOM05D006952 ORTHO05D008687 3.7e-41 172.6 119 66.4
TPR.G6676 Trifolium pratense HOM05D006952 ORTHO05D008687 1.8e-40 170.2 119 64.7
Medtr4g014970 Medicago truncatula HOM05D006952 ORTHO05D008687 3.1e-40 169.5 110 70.0
Pp3c15_15480 Physcomitrium patens HOM05D006952 ORTHO05D008687 4.5e-39 165.6 111 66.7
Rhsim04G0165900 Rhododendron simsii HOM05D006952 ORTHO05D008687 4.5e-39 165.6 105 72.4
HPP92_012624 Vanilla planifolia HOM05D006952 ORTHO05D008687 4.5e-39 165.6 108 73.1
HanXRQChr13g0406351 Helianthus annuus HOM05D006952 ORTHO05D008687 5.9e-39 165.2 104 71.2
DCAR_008639 Daucus carota HOM05D006952 ORTHO05D008687 7.7e-39 164.9 113 68.1
HanXRQChr13g0406361 Helianthus annuus HOM05D006952 ORTHO05D008687 7.7e-39 164.9 103 71.8
Ah.15g089870 Amaranthus hybridus HOM05D006952 ORTHO05D008687 3.8e-38 162.5 113 69.9
Pp3c9_14060 Physcomitrium patens HOM05D006952 ORTHO05D008687 3.2e-37 159.5 110 63.6
AagrBONN_evm.TU.Sc2ySwM_228.2345 Anthoceros agrestis HOM05D001533 ORTHO05D003743 4.2e-37 159.1 111 65.8
Lsat_1_v5_gn_5_155300 Lactuca sativa HOM05D006952 ORTHO05D008687 4.2e-37 159.1 102 67.6
Lsat_1_v5_gn_5_155361 Lactuca sativa HOM05D006952 ORTHO05D008687 4.7e-36 155.6 108 63.9
HanXRQChr13g0406341 Helianthus annuus HOM05D006952 ORTHO05D008687 9.7e-34 147.9 111 61.3
Cc02_g31680 Coffea canephora HOM05D006952 ORTHO05D008687 9.1e-32 141.4 100 71.0
CSS0036371 Camellia sinensis var. sinensis HOM05D006952 ORTHO05D008687 2.9e-30 136.3 105 61.0
Cc07_g20110 Coffea canephora HOM05D006952 ORTHO05D008687 2.9e-30 136.3 115 66.1
Zm00001eb011810 Zea mays HOM05D006952 ORTHO05D008687 3.2e-29 132.9 116 57.8
Os03g0265800 Oryza sativa ssp. japonica HOM05D006952 ORTHO05D008687 1.0e-27 127.9 104 60.6
Sabra06G0073900 Salix brachista HOM05D006952 ORTHO05D008687 5.2e-27 125.6 113 61.1
Psat0s1978g0160 Pisum sativum HOM05D006607 ORTHO05D008166 2.6e-26 123.2 96 63.5
SEGI_04409 Sequoiadendron giganteum HOM05D006952 ORTHO05D008687 1.7e-25 120.6 113 54.0
Mapoly0072s0073 Marchantia polymorpha HOM05D006952 ORTHO05D008687 2.2e-25 120.2 107 55.1
Nitab4.5_0011723g0010 Nicotiana tabacum HOM05D006952 ORTHO05D008687 4.8e-25 119.0 107 55.1
GSVIVG01034013001 Vitis vinifera HOM05D006952 ORTHO05D008687 2.5e-21 106.7 52 92.3
Cre03.g188900 Chlamydomonas reinhardtii HOM05D006952 ORTHO05D008687 3.0e-11 73.2 97 45.4
TAR731G0001 Trochodendron aralioides HOM05D000320 ORTHO05D000532 1.5e-10 70.9 57 63.2
RcHm_v2.0_Chr4g0412041 Rosa chinensis HOM05D006952 ORTHO05D008687 2.8e-09 66.6 41 70.7
SEGI_08039 Sequoiadendron giganteum HOM05D006952 ORTHO05D008687 1.6e-07 60.8 74 41.9


User provided reference genes

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