Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G189800 Glycine max HOM05D006892 ORTHO05D008592 4.8e-38 160.6 78 100.0
Glyma.04G105400 Glycine max HOM05D006892 ORTHO05D008592 9.1e-37 156.4 77 97.4
Glyma.07G139200 Glycine max HOM05D006892 ORTHO05D008592 1.1e-34 149.4 78 92.3
Lj1g0020029 Lotus japonicus HOM05D006892 ORTHO05D008592 4.4e-31 137.5 78 83.3
Lalb_Chr19g0125031 Lupinus albus HOM05D006892 ORTHO05D008592 3.7e-30 134.4 78 82.1
Psat3g133520 Pisum sativum HOM05D006892 ORTHO05D008592 1.4e-29 132.5 76 81.6
Lalb_Chr03g0042701 Lupinus albus HOM05D006892 ORTHO05D008592 4.1e-29 131.0 78 80.8
TPR.G34921 Trifolium pratense HOM05D006892 ORTHO05D008592 7.7e-28 126.7 79 78.5
arahy.Tifrunner.gnm1.ann1.71B432 Arachis hypogaea HOM05D006892 ORTHO05D008592 1.7e-27 125.6 77 80.5
arahy.Tifrunner.gnm1.ann1.AC77RP Arachis hypogaea HOM05D006892 ORTHO05D008592 2.2e-27 125.2 77 80.5
Phvul.008G114100 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 3.8e-27 124.4 78 80.8
Glyma.03G073200 Glycine max HOM05D006892 ORTHO05D008592 1.5e-26 122.5 80 75.0
Medtr7g065130 Medicago truncatula HOM05D006892 ORTHO05D008592 1.9e-26 122.1 76 73.7
Glyma.01G105400 Glycine max HOM05D006892 ORTHO05D008592 9.4e-26 119.8 79 72.2
Lj3g0005144 Lotus japonicus HOM05D006892 ORTHO05D008592 9.4e-26 119.8 75 73.3
Medtr4g019640 Medicago truncatula HOM05D006892 ORTHO05D008592 6.8e-24 113.6 74 70.3
Phvul.010G009200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 1.3e-22 109.4 76 68.4
Psat7g241320 Pisum sativum HOM05D006892 ORTHO05D008592 1.7e-22 109.0 79 64.6
TPR.G32561 Trifolium pratense HOM05D006892 ORTHO05D008592 9.1e-21 103.2 80 62.5
arahy.Tifrunner.gnm1.ann1.KB6CC9 Arachis hypogaea HOM05D006892 ORTHO05D008592 2.7e-20 101.7 57 75.4
arahy.Tifrunner.gnm1.ann1.KX701I Arachis hypogaea HOM05D006892 ORTHO05D008592 2.7e-20 101.7 57 75.4
RcHm_v2.0_Chr3g0464651 Rosa chinensis HOM05D006892 ORTHO05D008592 1.0e-19 99.8 76 55.3
Prupe.6G264500 Prunus persica HOM05D006892 ORTHO05D008592 1.5e-18 95.9 78 51.3
FAN14G5964 Fragaria x ananassa HOM05D006892 ORTHO05D008592 1.9e-18 95.5 76 51.3
Atru.chr8.2090 Acer truncatum HOM05D006892 ORTHO05D008592 7.2e-18 93.6 78 55.1
FvH4_6g12730 Fragaria vesca HOM05D006892 ORTHO05D008592 9.5e-18 93.2 76 50.0
FAN09G3730 Fragaria x ananassa HOM05D006892 ORTHO05D008592 9.5e-18 93.2 74 51.4
FAN02G3144 Fragaria x ananassa HOM05D006892 ORTHO05D008592 1.6e-17 92.4 76 48.7
FAN05G3252 Fragaria x ananassa HOM05D006892 ORTHO05D008592 2.8e-17 91.7 72 51.4
Manes.09G098400 Manihot esculenta HOM05D006892 ORTHO05D008592 2.8e-17 91.7 76 59.2
MD12G1154700 Malus domestica HOM05D006892 ORTHO05D008592 3.6e-17 91.3 70 57.1
Haze_20883 Corylus avellana HOM05D006892 ORTHO05D008592 6.1e-17 90.5 70 58.6
Haze_20892 Corylus avellana HOM05D006892 ORTHO05D008592 6.1e-17 90.5 70 58.6
Thecc.05G029200 Theobroma cacao HOM05D006892 ORTHO05D008592 1.4e-16 89.4 74 55.4
CiPaw.09G201300 Carya illinoinensis HOM05D006892 ORTHO05D008592 2.3e-16 88.6 81 58.0
TAR636G2473 Trochodendron aralioides HOM05D006892 ORTHO05D008592 3.0e-16 88.2 78 50.0
Dinv37115 Davidia involucrata HOM05D006892 ORTHO05D008592 5.2e-16 87.4 73 53.4
MD04G1138900 Malus domestica HOM05D006892 ORTHO05D008592 1.2e-15 86.3 70 57.1
Manes.08G082100 Manihot esculenta HOM05D006892 ORTHO05D008592 1.2e-15 86.3 75 50.7
Gohir.D09G148100 Gossypium hirsutum HOM05D006892 ORTHO05D008592 1.5e-15 85.9 74 54.1
Gorai.006G169100 Gossypium raimondii HOM05D006892 ORTHO05D008592 1.5e-15 85.9 74 54.1
COL.COLO4_14695 Corchorus olitorius HOM05D006892 ORTHO05D008592 2.0e-15 85.5 75 54.7
Gohir.A09G152400 Gossypium hirsutum HOM05D006892 ORTHO05D008592 2.0e-15 85.5 74 54.1
TAR623G0452 Trochodendron aralioides HOM05D006892 ORTHO05D008592 3.4e-15 84.7 74 52.7
Ciclev10013234m.g Citrus clementina HOM05D006892 ORTHO05D008592 5.7e-15 84.0 70 58.6
CiPaw.10G149300 Carya illinoinensis HOM05D006892 ORTHO05D008592 9.8e-15 83.2 53 69.8
TAR633G0729 Trochodendron aralioides HOM05D006892 ORTHO05D008592 9.8e-15 83.2 78 50.0
Gohir.D04G125400 Gossypium hirsutum HOM05D006892 ORTHO05D008592 1.1e-13 79.7 80 47.5
Gorai.012G108500 Gossypium raimondii HOM05D006892 ORTHO05D008592 1.1e-13 79.7 80 47.5
GSVIVG01016437001 Vitis vinifera HOM05D006892 ORTHO05D008592 1.1e-13 79.7 72 52.8
Dinv34454 Davidia involucrata HOM05D006892 ORTHO05D008592 1.8e-13 79.0 76 46.1
Hma1.2p1_0039F.1_g024865 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 3.2e-13 78.2 67 49.3
Hma1.2p1_0039F.1_g024870 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 3.2e-13 78.2 67 49.3
HanXRQChr05g0156901 Helianthus annuus HOM05D006892 ORTHO05D008592 5.4e-13 77.4 54 57.4
CSS0009632 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 7.0e-13 77.0 78 50.0
Potri.006G092300 Populus trichocarpa HOM05D006892 ORTHO05D008592 7.0e-13 77.0 72 54.2
Potri.010G196500 Populus trichocarpa HOM05D006892 ORTHO05D008592 7.0e-13 77.0 78 44.9
Potri.016G103900 Populus trichocarpa HOM05D006892 ORTHO05D008592 9.2e-13 76.6 56 58.9
CSS0005500 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 1.6e-12 75.9 79 46.8
CSS0020330 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 1.6e-12 75.9 78 48.7
Gohir.A04G085600 Gossypium hirsutum HOM05D006892 ORTHO05D008592 2.0e-12 75.5 72 50.0
MBI14_g02866_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 2.0e-12 75.5 74 45.9
MBI14_g02865_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 3.5e-12 74.7 74 45.9
Haze_17148 Corylus avellana HOM05D000015 ORTHO05D000270 4.6e-12 74.3 71 49.3
Haze_18710 Corylus avellana HOM05D006892 ORTHO05D008592 4.6e-12 74.3 77 48.1
MBI05_g02667_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 4.6e-12 74.3 74 44.6
Cpa.g.sc56.60 Carica papaya HOM05D006892 ORTHO05D008592 5.9e-12 73.9 71 50.7
Lsat_1_v5_gn_9_32981 Lactuca sativa HOM05D006892 ORTHO05D008592 5.9e-12 73.9 75 46.7
Actinidia13165 Actinidia chinensis HOM05D006892 ORTHO05D008592 1.3e-11 72.8 72 47.2
Ciclev10033223m.g Citrus clementina HOM05D006892 ORTHO05D008592 1.3e-11 72.8 73 47.9
Sabra10G0151100 Salix brachista HOM05D006892 ORTHO05D008592 1.3e-11 72.8 70 50.0
Haze_17150 Corylus avellana HOM05D006892 ORTHO05D008592 1.7e-11 72.4 79 48.1
CSS0014654 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 2.3e-11 72.0 71 45.1
Nn2g13528 Nelumbo nucifera HOM05D006892 ORTHO05D008592 2.9e-11 71.6 80 43.8
Rhsim05G0199800 Rhododendron simsii HOM05D006892 ORTHO05D008592 2.9e-11 71.6 71 49.3
Sabra06G0070000 Salix brachista HOM05D006892 ORTHO05D008592 3.9e-11 71.2 75 46.7
MBI14_g02869_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 6.6e-11 70.5 42 61.9
GSVIVG01034067001 Vitis vinifera HOM05D006892 ORTHO05D008592 6.6e-11 70.5 66 54.5
Atru.chr12.266 Acer truncatum HOM05D006892 ORTHO05D008592 8.6e-11 70.1 83 47.0
ClCG04G007580 Citrullus lanatus HOM05D006892 ORTHO05D008592 8.6e-11 70.1 46 60.9
Sabra08G0045200 Salix brachista HOM05D006892 ORTHO05D008592 8.6e-11 70.1 73 46.6
Cc06_g02080 Coffea canephora HOM05D006892 ORTHO05D008592 1.1e-10 69.7 76 47.4
COL.COLO4_36543 Corchorus olitorius HOM05D006892 ORTHO05D008592 1.1e-10 69.7 65 47.7
Phvul.001G238200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 1.1e-10 69.7 73 41.1
Sed0015200 Sechium edule HOM05D006892 ORTHO05D008592 1.1e-10 69.7 45 64.4
DCAR_028810 Daucus carota HOM05D006892 ORTHO05D008592 3.3e-10 68.2 43 60.5
Medtr3g069540 Medicago truncatula HOM05D006892 ORTHO05D008592 3.3e-10 68.2 73 46.6
CSS0011916 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 4.3e-10 67.8 78 47.4
Manes.07G122400 Manihot esculenta HOM05D006892 ORTHO05D008592 5.6e-10 67.4 75 44.0
Potri.008G061600 Populus trichocarpa HOM05D006892 ORTHO05D008592 5.6e-10 67.4 100 37.0
Cfa001402 Carpinus fangiana HOM05D006892 ORTHO05D008592 7.3e-10 67.0 79 43.0
MELO3C033485.2 Cucumis melo HOM05D006892 ORTHO05D008592 9.5e-10 66.6 70 47.1
Thecc.10G031400 Theobroma cacao HOM05D006892 ORTHO05D008592 9.5e-10 66.6 77 44.2
PGSC0003DMG400024270 Solanum tuberosum HOM05D006892 ORTHO05D008592 1.2e-09 66.2 79 43.0
Glyma.18G033400 Glycine max HOM05D006892 ORTHO05D008592 1.6e-09 65.9 69 46.4
Manes.10G021300 Manihot esculenta HOM05D006892 ORTHO05D008592 2.1e-09 65.5 73 50.7
CiPaw.01G293100 Carya illinoinensis HOM05D006892 ORTHO05D008592 2.8e-09 65.1 72 37.5
Eucgr.G02995 Eucalyptus grandis HOM05D006892 ORTHO05D008592 4.7e-09 64.3 68 44.1
CAN.G697.1 Capsicum annuum HOM05D006892 ORTHO05D008592 6.2e-09 63.9 59 50.8
Actinidia02903 Actinidia chinensis HOM05D006892 ORTHO05D008592 1.0e-08 63.2 78 42.3
TAR633G0009 Trochodendron aralioides HOM05D006892 ORTHO05D414936 2.3e-08 62.0 74 45.9
Sopen09g006180 Solanum pennellii HOM05D006892 ORTHO05D008592 3.1e-08 61.6 83 43.4
Cpa.g.sc19.256 Carica papaya HOM05D006892 ORTHO05D008592 4.0e-08 61.2 74 47.3
Lj6g0007525 Lotus japonicus HOM05D006892 ORTHO05D008592 4.0e-08 61.2 78 37.2
Gorai.011G273300 Gossypium raimondii HOM05D006892 ORTHO05D008592 5.2e-08 60.8 77 44.2
Eucgr.G02997 Eucalyptus grandis HOM05D006892 ORTHO05D008592 6.8e-08 60.5 68 42.6
Gohir.A10G225300 Gossypium hirsutum HOM05D006892 ORTHO05D008592 1.2e-07 59.7 73 42.5
HanXRQChr08g0221291 Helianthus annuus HOM05D006892 ORTHO05D008592 1.2e-07 59.7 45 53.3
arahy.Tifrunner.gnm1.ann1.F5D7CA Arachis hypogaea HOM05D006892 ORTHO05D008592 2.0e-07 58.9 81 39.5
CDE02G2266 Ceratophyllum demersum HOM05D006892 ORTHO05D008592 2.0e-07 58.9 79 36.7
Sc07g0007010 Simmondsia chinensis HOM05D006892 ORTHO05D008592 5.8e-07 57.4 83 42.2
Gohir.D10G238364 Gossypium hirsutum HOM05D006892 ORTHO05D008592 7.5e-07 57.0 73 41.1
Medtr4g029470 Medicago truncatula HOM05D006892 ORTHO05D259580 7.5e-07 57.0 34 73.5
Sopen03g027280 Solanum pennellii HOM05D006892 ORTHO05D008592 7.5e-07 57.0 41 51.2
Sopen09g006190 Solanum pennellii HOM05D006892 ORTHO05D008592 9.8e-07 56.6 47 51.1
TPR.G33720 Trifolium pratense HOM05D006892 ORTHO05D008592 1.3e-06 56.2 77 39.0
arahy.Tifrunner.gnm1.ann1.J5YN7E Arachis hypogaea HOM05D006892 ORTHO05D008592 2.9e-06 55.1 81 37.0
HPP92_019858 Vanilla planifolia HOM05D006892 ORTHO05D008592 3.7e-06 54.7 76 32.9


User provided reference genes

Program Settings