Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G185200 Glycine max HOM05D006045 ORTHO05D007678 9.1e-235 816.6 439 100.0
Lj1g0013519 Lotus japonicus HOM05D006045 ORTHO05D007678 2.1e-146 523.1 448 61.4
Lj3g0020199 Lotus japonicus HOM05D006045 ORTHO05D007678 8.2e-143 511.1 443 61.2
Psat3g136040 Pisum sativum HOM05D006045 ORTHO05D007678 7.2e-131 471.5 446 57.4
VMungo1383G2703 Vigna mungo HOM05D006045 ORTHO05D007678 2.7e-130 469.5 356 68.0
Ca_07336_v3 Cicer arietinum L. HOM05D006045 ORTHO05D007678 9.7e-128 461.1 447 57.0
arahy.Tifrunner.gnm1.ann1.H3QXFP Arachis hypogaea HOM05D006045 ORTHO05D007678 4.1e-126 455.7 435 59.5
Lalb_Chr03g0042401 Lupinus albus HOM05D006045 ORTHO05D007678 5.3e-126 455.3 448 56.5
Medtr7g062630 Medicago truncatula HOM05D006045 ORTHO05D007678 6.5e-124 448.4 447 55.7
Phvul.008G118100 Phaseolus vulgaris HOM05D006045 ORTHO05D007678 2.6e-120 436.4 315 74.9
arahy.Tifrunner.gnm1.ann1.FBGI2B Arachis hypogaea HOM05D006045 ORTHO05D007678 2.3e-108 396.7 377 59.2
Medtr6g445490 Medicago truncatula HOM05D006045 ORTHO05D007678 2.6e-96 356.7 451 46.8
Nn2g11183 Nelumbo nucifera HOM05D006045 ORTHO05D007678 1.7e-95 354.0 394 51.0
MD12G1145400 Malus domestica HOM05D006045 ORTHO05D007678 5.4e-94 349.0 388 49.7
QL07p030118 Quercus lobata HOM05D006045 ORTHO05D007678 2.7e-93 346.7 447 47.4
Thecc.05G035700 Theobroma cacao HOM05D006045 ORTHO05D007678 4.3e-91 339.3 446 44.6
TAR623G1560 Trochodendron aralioides HOM05D006045 ORTHO05D007678 9.5e-91 338.2 449 45.9
QL07p030894 Quercus lobata HOM05D006045 ORTHO05D007678 1.2e-90 337.8 448 46.2
CANSAT35G0136 Cannabis sativa HOM05D006045 ORTHO05D007678 4.0e-89 332.8 394 49.7
PGR004G1833 Punica granatum HOM05D006045 ORTHO05D007678 3.4e-88 329.7 447 44.3
GSVIVG01034130001 Vitis vinifera HOM05D006045 ORTHO05D007678 1.3e-87 327.8 388 48.5
CiPaw.09G195700 Carya illinoinensis HOM05D006045 ORTHO05D007678 2.2e-87 327.0 446 45.5
Prupe.6G259100 Prunus persica HOM05D006045 ORTHO05D007678 2.2e-87 327.0 445 46.5
Ciclev10011734m.g Citrus clementina HOM05D006045 ORTHO05D007678 2.9e-87 326.6 404 46.0
Gohir.A04G065300 Gossypium hirsutum HOM05D006045 ORTHO05D007678 1.1e-86 324.7 437 44.4
Eucgr.K03104 Eucalyptus grandis HOM05D006045 ORTHO05D007678 1.9e-86 323.9 419 45.8
AUR62034450 Chenopodium quinoa HOM05D006045 ORTHO05D007678 4.1e-86 322.8 452 43.8
Gorai.009G406000 Gossypium raimondii HOM05D006045 ORTHO05D007678 4.1e-86 322.8 393 47.6
Oeu010102.1 Olea europaea HOM05D006045 ORTHO05D007678 1.2e-85 321.2 448 43.3
TPR.G18356 Trifolium pratense HOM05D006045 ORTHO05D007678 3.5e-85 319.7 291 56.7
Gohir.D04G102700 Gossypium hirsutum HOM05D006045 ORTHO05D007678 6.0e-85 318.9 393 47.3
EL10Ac2g03023 Beta vulgaris HOM05D006045 ORTHO05D007678 5.1e-84 315.8 454 44.1
Potri.002G091400 Populus trichocarpa HOM05D006045 ORTHO05D007678 6.6e-84 315.5 447 44.1
PSO339G1759 Papaver somniferum HOM05D006045 ORTHO05D007678 8.6e-84 315.1 413 46.0
AUR62018119 Chenopodium quinoa HOM05D006045 ORTHO05D007678 3.3e-83 313.2 451 43.7
FvH4_6g13250 Fragaria vesca HOM05D006045 ORTHO05D007678 3.6e-82 309.7 448 43.3
Manes.09G092411 Manihot esculenta HOM05D006045 ORTHO05D007678 4.7e-82 309.3 440 41.6
DCAR_028758 Daucus carota HOM05D006045 ORTHO05D007678 1.4e-81 307.8 451 43.7
Duzib106G0862 Durio zibethinus HOM05D006045 ORTHO05D007678 5.2e-81 305.8 393 44.8
RcHm_v2.0_Chr3g0466081 Rosa chinensis HOM05D006045 ORTHO05D007678 5.2e-81 305.8 445 43.1
PGSC0003DMG400008825 Solanum tuberosum HOM05D006045 ORTHO05D007678 5.2e-81 305.8 445 43.1
Solyc09g011020.4 Solanum lycopersicum HOM05D006045 ORTHO05D007678 8.9e-81 305.1 390 46.7
MD04G1132700 Malus domestica HOM05D006045 ORTHO05D007678 2.0e-80 303.9 386 47.4
FAN14G1932 Fragaria x ananassa HOM05D006045 ORTHO05D007678 5.8e-80 302.4 459 42.3
TWI77G0138 Tripterygium wilfordii HOM05D006045 ORTHO05D007678 7.6e-80 302.0 430 43.7
Sed0026133 Sechium edule HOM05D006045 ORTHO05D007678 2.2e-79 300.4 448 40.6
Sopen09g005740 Solanum pennellii HOM05D006045 ORTHO05D007678 6.4e-79 298.9 447 43.0
FAN02G2147 Fragaria x ananassa HOM05D006045 ORTHO05D007678 8.3e-79 298.5 448 42.0
CAN.G597.3 Capsicum annuum HOM05D006045 ORTHO05D007678 1.9e-78 297.4 445 42.5
CSS0032526 Camellia sinensis var. sinensis HOM05D006045 ORTHO05D007678 5.4e-78 295.8 451 42.8
Lsat_1_v5_gn_5_154000 Lactuca sativa HOM05D006045 ORTHO05D007678 1.3e-76 291.2 389 45.5
MSTRG.19073 Avicennia marina HOM05D006045 ORTHO05D007678 2.3e-76 290.4 447 41.6
Hund15247 Selenicereus undatus HOM05D006045 ORTHO05D007678 2.3e-76 290.4 433 41.3
MELO3C009242.2 Cucumis melo HOM05D006045 ORTHO05D007678 3.9e-76 289.7 437 41.2
Sabra02G0072200 Salix brachista HOM05D006045 ORTHO05D007678 3.9e-76 289.7 438 41.3
Carub.0006s0097 Capsella rubella HOM05D006045 ORTHO05D007678 1.9e-75 287.3 441 41.5
ATR0559G357 Amborella trichopoda HOM05D006045 ORTHO05D007678 4.3e-75 286.2 447 40.5
BcaB01g06214 Brassica carinata HOM05D006045 ORTHO05D007678 5.6e-75 285.8 421 41.8
HanXRQChr13g0406931 Helianthus annuus HOM05D006045 ORTHO05D007678 2.1e-74 283.9 421 43.7
THA.LOC104816254 Tarenaya hassleriana HOM05D006045 ORTHO05D007678 2.1e-74 283.9 446 40.1
Cc06_g02350 Coffea canephora HOM05D006045 ORTHO05D007678 6.2e-74 282.3 395 43.0
Haze_20828 Corylus avellana HOM05D006045 ORTHO05D007678 8.1e-74 282.0 389 44.0
CARHR211230 Cardamine hirsuta HOM05D006045 ORTHO05D007678 1.4e-73 281.2 437 39.4
ECA248G0328 Erigeron canadensis HOM05D006045 ORTHO05D007678 3.1e-73 280.0 390 44.4
BolC9t60170H Brassica oleracea HOM05D006045 ORTHO05D007678 4.0e-73 279.6 422 39.1
Cfa017339 Carpinus fangiana HOM05D006045 ORTHO05D007678 5.2e-73 279.3 389 43.4
AT5G02130 Arabidopsis thaliana HOM05D006045 ORTHO05D007678 1.5e-72 277.7 390 41.3
C09p74360 Brassica napus HOM05D006045 ORTHO05D007678 3.4e-72 276.6 422 39.1
BraA03t09445Z Brassica rapa HOM05D006045 ORTHO05D007678 9.9e-72 275.0 437 39.1
BraA10t45376Z Brassica rapa HOM05D006045 ORTHO05D007678 9.9e-72 275.0 391 40.9
CDE06G1975 Ceratophyllum demersum HOM05D006045 ORTHO05D007678 2.9e-71 273.5 391 41.2
Migut.J00307 Erythranthe guttata HOM05D006045 ORTHO05D007678 4.9e-71 272.7 440 39.1
Aa31LG1G22600 Aethionema arabicum HOM05D006045 ORTHO05D007678 8.4e-71 271.9 394 40.4
AL6G11360 Arabidopsis lyrata HOM05D006045 ORTHO05D007678 8.4e-71 271.9 390 41.3
Sp6g40310 Schrenkiella parvula HOM05D006045 ORTHO05D007678 2.4e-70 270.4 431 38.3
CsaV3_3G034720 Cucumis sativus L. HOM05D006045 ORTHO05D007678 3.2e-70 270.0 450 39.6
vmacro08642 Vaccinium macrocarpon HOM05D006045 ORTHO05D007678 3.2e-70 270.0 416 40.9
Thhalv10013663m.g Eutrema salsugineum HOM05D006045 ORTHO05D007678 9.3e-70 268.5 390 40.8
A03p00550 Brassica napus HOM05D006045 ORTHO05D007678 3.5e-69 266.5 442 38.7
MBI14_g08020_MAGBIO Magnolia biondii HOM05D006045 ORTHO05D007678 4.6e-69 266.2 394 41.4
SHI12713 Sapria himalayana HOM05D006045 ORTHO05D007678 3.0e-68 263.5 403 40.4
A10p33460 Brassica napus HOM05D006045 ORTHO05D007678 6.6e-68 262.3 465 36.8
SGA_v2.0_scaffold126G33761 Striga asiatica HOM05D006045 ORTHO05D007678 1.8e-65 254.2 395 40.3
Sc22g0004440 Simmondsia chinensis HOM05D006045 ORTHO05D007678 1.7e-63 247.7 322 45.3
Lj3A965G74 Lonicera japonica HOM05D006045 ORTHO05D007678 1.3e-58 231.5 302 44.7
Rhsim04G0158800 Rhododendron simsii HOM05D006045 ORTHO05D007678 2.8e-58 230.3 461 35.6
Nitab4.5_0000705g0060 Nicotiana tabacum HOM05D006045 ORTHO05D007678 4.5e-56 223.0 349 40.4
Nitab4.5_0003394g0010 Nicotiana tabacum HOM05D006045 ORTHO05D007678 2.2e-55 220.7 349 40.1
BcaB01g06067 Brassica carinata HOM05D006045 ORTHO05D007678 2.9e-55 220.3 390 36.2
C03p00810 Brassica napus HOM05D006045 ORTHO05D007678 1.1e-54 218.4 338 39.3
ClCG10G021320 Citrullus lanatus HOM05D006045 ORTHO05D007678 2.7e-53 213.8 555 32.3
SEGI_25878 Sequoiadendron giganteum HOM05D006045 ORTHO05D007678 3.0e-52 210.3 376 35.9
Peaxi162Scf00527g00742 Petunia axillaris HOM05D006045 ORTHO05D007678 1.9e-51 207.6 370 37.8
Os05g0457700 Oryza sativa ssp. japonica HOM05D006045 ORTHO05D007678 2.8e-50 203.8 348 37.6
Aqoxy1G00880 Aquilegia oxysepala HOM05D006045 ORTHO05D007678 1.8e-49 201.1 335 40.9
CiPaw.09G197100 Carya illinoinensis HOM05D006045 ORTHO05D007678 3.1e-49 200.3 216 53.2
SalBow1G6939 Salvia bowleyana HOM05D006045 ORTHO05D007678 3.8e-47 193.4 357 38.9
FAN05G2873 Fragaria x ananassa HOM05D006045 ORTHO05D007678 1.1e-43 181.8 204 51.5
HPP92_014298 Vanilla planifolia HOM05D006045 ORTHO05D007678 2.9e-39 167.2 252 40.9
PSO063G1044 Papaver somniferum HOM05D006045 ORTHO05D007678 1.3e-34 151.8 221 41.6
Rhsim04G0160900 Rhododendron simsii HOM05D006045 ORTHO05D007678 1.7e-31 141.4 402 31.8
Pp3c17_13640 Physcomitrium patens HOM05D006045 ORTHO05D007678 7.2e-30 136.0 391 30.7
Glyma.10G191650 Glycine max HOM05D006045 ORTHO05D007678 7.9e-29 132.5 89 83.1
Mapoly0002s0152 Marchantia polymorpha HOM05D006045 ORTHO05D007678 1.8e-28 131.3 329 31.3
SMO361G0160 Selaginella moellendorffii HOM05D006045 ORTHO05D007678 1.5e-27 128.3 352 29.8
SMO361G0306 Selaginella moellendorffii HOM05D006045 ORTHO05D007678 1.5e-27 128.3 352 29.5
Glyma.07G135200 Glycine max HOM05D006045 ORTHO05D007678 1.7e-23 114.8 66 86.4
Atru.chr8.2013 Acer truncatum HOM05D006045 ORTHO05D007678 2.2e-23 114.4 425 26.4
Gohir.A04G065314 Gossypium hirsutum HOM05D006045 ORTHO05D007678 1.6e-21 108.2 99 56.6
Cpa.g.sc169.5 Carica papaya HOM05D006045 ORTHO05D007678 2.2e-18 97.8 155 38.7
COL.COLO4_14760 Corchorus olitorius HOM05D006045 ORTHO05D007678 3.5e-16 90.5 96 54.2
PSO339G4427 Papaver somniferum HOM05D006045 ORTHO05D007678 5.9e-16 89.7 172 36.0
CBR_g8766 Chara braunii HOM05D006045 ORTHO05D007678 1.0e-15 89.0 409 24.7
Glyma.07G135250 Glycine max HOM05D006045 ORTHO05D007678 6.5e-15 86.3 46 80.4
Hma1.2p1_0028F.1_g017940 Hydrangea macrophylla HOM05D006045 ORTHO05D007678 1.2e-13 82.0 120 37.5
MD07G1261700 Malus domestica HOM05D006045 ORTHO05D007678 1.0e-12 79.0 127 40.2
Medtr4g078800 Medicago truncatula HOM05D006045 ORTHO05D007678 1.2e-08 65.5 161 29.2
HPP92_014299 Vanilla planifolia HOM05D006045 ORTHO05D007678 7.7e-08 62.8 98 38.8
Medtr2g093870 Medicago truncatula HOM05D006045 ORTHO05D007678 2.2e-07 61.2 89 43.8
Zm00001eb351230 Zea mays HOM05D006045 ORTHO05D007678 2.2e-07 61.2 186 28.0
Medtr7g062690 Medicago truncatula HOM05D006045 ORTHO05D007678 3.2e-06 57.4 77 46.8


User provided reference genes

Program Settings