Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G183600 Glycine max HOM05D007762 ORTHO05D008066 2.5e-127 458.8 227 100.0
Glyma.07G134000 Glycine max HOM05D007762 ORTHO05D008066 7.3e-111 404.1 227 86.8
Phvul.008G119100 Phaseolus vulgaris HOM05D007762 ORTHO05D008066 1.9e-95 352.8 227 74.4
Lalb_Chr19g0125241 Lupinus albus HOM05D007762 ORTHO05D008066 1.8e-72 276.6 237 60.8
Psat3g137360 Pisum sativum HOM05D007762 ORTHO05D008066 1.6e-62 243.4 238 56.3
Lj3g0025123 Lotus japonicus HOM05D007762 ORTHO05D008066 1.1e-58 230.7 237 52.7
arahy.Tifrunner.gnm1.ann1.LX2K9J Arachis hypogaea HOM05D007762 ORTHO05D008066 2.4e-53 213.0 237 53.6
Medtr7g062260 Medicago truncatula HOM05D007762 ORTHO05D008066 2.2e-51 206.5 233 52.4
Phvul.010G014900 Phaseolus vulgaris HOM05D007762 ORTHO05D008066 3.2e-50 202.6 259 48.6
TPR.G1723 Trifolium pratense HOM05D007762 ORTHO05D008066 3.2e-50 202.6 239 51.9
arahy.Tifrunner.gnm1.ann1.NCI3TY Arachis hypogaea HOM05D007762 ORTHO05D008066 8.0e-41 171.4 212 48.6
TAR633G0209 Trochodendron aralioides HOM05D007762 ORTHO05D008066 3.1e-37 159.5 265 41.5
Cfa017354 Carpinus fangiana HOM05D007762 ORTHO05D008066 1.6e-36 157.1 256 40.6
Dinv35582 Davidia involucrata HOM05D007762 ORTHO05D008066 2.0e-36 156.8 264 39.4
Dinv37157 Davidia involucrata HOM05D007762 ORTHO05D008066 2.9e-35 152.9 261 38.3
QL07p048844 Quercus lobata HOM05D007762 ORTHO05D008066 3.8e-35 152.5 254 38.6
Prupe.6G257800 Prunus persica HOM05D007762 ORTHO05D008066 2.5e-34 149.8 249 42.6
GSVIVG01034144001 Vitis vinifera HOM05D007762 ORTHO05D008066 3.2e-34 149.4 256 41.0
RcHm_v2.0_Chr3g0466291 Rosa chinensis HOM05D007762 ORTHO05D008066 8.0e-33 144.8 257 41.6
Actinidia11265 Actinidia chinensis HOM05D007762 ORTHO05D008066 4.0e-32 142.5 262 38.5
CiPaw.09G195100 Carya illinoinensis HOM05D007762 ORTHO05D008066 4.0e-32 142.5 238 40.8
Potri.006G087300 Populus trichocarpa HOM05D007762 ORTHO05D008066 4.8e-30 135.6 264 37.1
CiPaw.10G146800 Carya illinoinensis HOM05D007762 ORTHO05D008066 1.8e-29 133.7 238 39.9
CsaV3_3G034800 Cucumis sativus L. HOM05D007762 ORTHO05D008066 5.4e-29 132.1 257 35.0
Manes.09G092000 Manihot esculenta HOM05D007762 ORTHO05D008066 5.4e-29 132.1 233 39.5
ClCG10G021240 Citrullus lanatus HOM05D007762 ORTHO05D008066 7.0e-29 131.7 257 35.8
Gorai.001G249600 Gossypium raimondii HOM05D007762 ORTHO05D008066 9.1e-29 131.3 244 39.8
FAN05G0447 Fragaria x ananassa HOM05D007762 ORTHO05D008066 4.5e-28 129.0 262 38.5
Gohir.A13G092305 Gossypium hirsutum HOM05D007762 ORTHO05D008066 7.7e-28 128.3 237 40.1
Gohir.A13G092310 Gossypium hirsutum HOM05D007762 ORTHO05D008066 7.7e-28 128.3 237 40.1
Sed0022945 Sechium edule HOM05D007762 ORTHO05D008066 1.0e-27 127.9 247 38.1
Gohir.D13G098400 Gossypium hirsutum HOM05D007762 ORTHO05D008066 1.3e-27 127.5 243 39.1
TWI74G1309 Tripterygium wilfordii HOM05D007762 ORTHO05D008066 1.3e-27 127.5 259 38.2
FvH4_6g13420 Fragaria vesca HOM05D007762 ORTHO05D008066 2.2e-27 126.7 262 38.2
FAN14G2701 Fragaria x ananassa HOM05D007762 ORTHO05D008066 2.9e-27 126.3 262 38.2
FAN09G1623 Fragaria x ananassa HOM05D007762 ORTHO05D008066 1.5e-26 124.0 257 37.0
FAN02G3004 Fragaria x ananassa HOM05D007762 ORTHO05D008066 1.9e-26 123.6 253 37.5
Sabra06G0066600 Salix brachista HOM05D007762 ORTHO05D003096 3.2e-26 122.9 262 37.8
MD04G1131300 Malus domestica HOM05D007762 ORTHO05D008066 4.2e-26 122.5 221 40.7
MD12G1144400 Malus domestica HOM05D007762 ORTHO05D008066 5.5e-26 122.1 250 38.0
CANSAT11G0018 Cannabis sativa HOM05D007762 ORTHO05D008066 1.6e-25 120.6 246 37.0
Thecc.05G036900 Theobroma cacao HOM05D007762 ORTHO05D008066 2.1e-25 120.2 259 37.1
Atru.chr8.1998 Acer truncatum HOM05D007762 ORTHO05D008066 4.7e-25 119.0 260 35.4
Hma1.2p1_1889F.1_g306660 Hydrangea macrophylla HOM05D007762 ORTHO05D008066 5.2e-24 115.5 264 36.0
Hma1.2p1_2197F.1_g316916 Hydrangea macrophylla HOM05D007762 ORTHO05D008066 5.2e-24 115.5 264 36.0
Cc10_g11770 Coffea canephora HOM05D007762 ORTHO05D008066 6.8e-24 115.2 235 35.7
Duzib106G0002 Durio zibethinus HOM05D007762 ORTHO05D008066 3.4e-23 112.8 255 36.9
Eucgr.K03113 Eucalyptus grandis HOM05D007762 ORTHO05D008066 5.7e-23 112.1 267 34.1
vmacro20167 Vaccinium macrocarpon HOM05D007762 ORTHO05D008066 1.3e-22 110.9 262 33.6
Eucgr.A01283 Eucalyptus grandis HOM05D007762 ORTHO05D008066 2.8e-22 109.8 262 33.2
Ciclev10013354m.g Citrus clementina HOM05D007762 ORTHO05D008066 3.7e-22 109.4 254 34.3
Nitab4.5_0008097g0020 Nicotiana tabacum HOM05D007762 ORTHO05D008066 8.3e-22 108.2 262 32.8
Cc06_g02460 Coffea canephora HOM05D007762 ORTHO05D008066 3.1e-21 106.3 263 33.1
Nitab4.5_0000527g0210 Nicotiana tabacum HOM05D007762 ORTHO05D008066 5.4e-21 105.5 260 33.1
Oeu023077.1 Olea europaea HOM05D007762 ORTHO05D008066 1.6e-20 104.0 254 33.9
Sopen10g035940 Solanum pennellii HOM05D007762 ORTHO05D008066 2.9e-19 99.8 235 34.0
PGR031G1528 Punica granatum HOM05D007762 ORTHO05D008066 6.6e-19 98.6 244 35.7
Oeu001858.1 Olea europaea HOM05D007762 ORTHO05D008066 1.1e-18 97.8 239 32.6
COL.COLO4_14776 Corchorus olitorius HOM05D007762 ORTHO05D008066 1.5e-18 97.4 257 33.9
Rhsim05G0194300 Rhododendron simsii HOM05D007762 ORTHO05D008066 1.5e-18 97.4 265 30.9
Solyc10g086560.3 Solanum lycopersicum HOM05D007762 ORTHO05D008066 1.9e-18 97.1 259 32.0
MSTRG.26781 Avicennia marina HOM05D007762 ORTHO05D008066 3.6e-17 92.8 256 29.7
CAN.G92.14 Capsicum annuum HOM05D007762 ORTHO05D008066 8.0e-17 91.7 254 32.7
MBI05_g29690_MAGBIO Magnolia biondii HOM05D007762 ORTHO05D008066 1.0e-16 91.3 241 32.8
PGR004G1606 Punica granatum HOM05D007762 ORTHO05D008066 1.2e-15 87.8 282 29.4
DCAR_024059 Daucus carota HOM05D007762 ORTHO05D008066 2.0e-15 87.0 240 32.5
Nn2g11166 Nelumbo nucifera HOM05D007762 ORTHO05D008066 2.6e-15 86.7 257 31.1
Potri.016G100100 Populus trichocarpa HOM05D007762 ORTHO05D008066 2.6e-15 86.7 232 33.2
Peaxi162Scf00330g00715 Petunia axillaris HOM05D007762 ORTHO05D008066 3.4e-15 86.3 254 31.1
Aqoxy1G00900 Aquilegia oxysepala HOM05D007762 ORTHO05D008066 9.8e-15 84.7 265 29.4
Lsat_1_v5_gn_9_33361 Lactuca sativa HOM05D007762 ORTHO05D008066 9.8e-15 84.7 232 30.6
MELO3C009249.2 Cucumis melo HOM05D007762 ORTHO05D008066 2.2e-14 83.6 231 29.0
FAN28G1746 Fragaria x ananassa HOM05D007762 ORTHO05D008066 6.4e-14 82.0 216 31.9
Peaxi162Scf00165g00078 Petunia axillaris HOM05D007762 ORTHO05D008066 6.4e-14 82.0 256 30.9
Duzib093G0438 Durio zibethinus HOM05D007762 ORTHO05D008066 1.8e-13 80.5 230 33.5
THA.LOC104806558 Tarenaya hassleriana HOM05D005320 ORTHO05D008066 3.2e-13 79.7 236 33.1
Migut.L01955 Erythranthe guttata HOM05D007762 ORTHO05D008066 4.1e-13 79.3 250 31.2
THA.LOC104805538 Tarenaya hassleriana HOM05D007762 ORTHO05D008066 1.2e-12 77.8 235 34.5
PSO339G2571 Papaver somniferum HOM05D007762 ORTHO05D008066 5.9e-12 75.5 225 31.6
MSTRG.5650 Avicennia marina HOM05D007762 ORTHO05D008066 7.8e-12 75.1 226 33.2
A05p08290 Brassica napus HOM05D005320 ORTHO05D008066 3.0e-11 73.2 226 31.0
Manes.09G092300 Manihot esculenta HOM05D007762 ORTHO05D008066 3.0e-11 73.2 84 50.0
EL10As1g23088 Beta vulgaris HOM05D021339 ORTHO05D008066 5.6e-10 68.9 215 31.6
Thhalv10017273m.g Eutrema salsugineum HOM05D005320 ORTHO05D008066 5.6e-10 68.9 235 30.2
AL4G34600 Arabidopsis lyrata HOM05D005320 ORTHO05D008066 9.5e-10 68.2 210 31.0
PGSC0003DMG402019151 Solanum tuberosum HOM05D007762 ORTHO05D008066 9.5e-10 68.2 225 29.3
C04p10260 Brassica napus HOM05D005320 ORTHO05D008066 2.1e-09 67.0 227 29.1
BolC4t22624H Brassica oleracea HOM05D005320 ORTHO05D008066 2.1e-09 67.0 227 28.6
Sc22g0004450 Simmondsia chinensis HOM05D007762 ORTHO05D008066 2.1e-09 67.0 62 54.8
Aa31LG1G22530 Aethionema arabicum HOM05D012592 ORTHO05D008066 1.0e-08 64.7 240 31.2
Hund10692 Selenicereus undatus HOM05D021339 ORTHO05D008066 1.4e-08 64.3 220 33.2
BcaC02g07500 Brassica carinata HOM05D005320 ORTHO05D008066 1.8e-08 63.9 215 32.1
C04p66130 Brassica napus HOM05D005320 ORTHO05D007922 1.8e-08 63.9 215 32.1
BcaB06g29018 Brassica carinata HOM05D005320 ORTHO05D008066 2.3e-08 63.5 211 30.8
BraA04t18361Z Brassica rapa HOM05D005320 ORTHO05D008066 3.1e-08 63.2 223 29.6
Migut.J00315 Erythranthe guttata HOM05D007762 ORTHO05D008066 3.1e-08 63.2 208 27.9
AT2G37678 Arabidopsis thaliana HOM05D005320 ORTHO05D008066 4.0e-08 62.8 242 28.5
A04p28870 Brassica napus HOM05D005320 ORTHO05D007922 5.2e-08 62.4 213 30.5
BcaC02g11890 Brassica carinata HOM05D005320 ORTHO05D008066 1.5e-07 60.8 227 29.1
BolC4t28116H Brassica oleracea HOM05D005320 ORTHO05D007922 2.6e-07 60.1 209 30.1
BcaB02g09262 Brassica carinata HOM05D005320 ORTHO05D008066 3.4e-07 59.7 228 29.8
Aa31sc70G60 Aethionema arabicum HOM05D005320 ORTHO05D008066 1.3e-06 57.8 204 28.9
AL6G11430 Arabidopsis lyrata HOM05D012592 ORTHO05D008066 1.3e-06 57.8 210 32.4
Carub.0004s1962 Capsella rubella HOM05D005320 ORTHO05D008066 1.3e-06 57.8 121 35.5
AUR62042387 Chenopodium quinoa HOM05D021339 ORTHO05D008066 2.2e-06 57.0 221 31.7
SGA_v2.0_scaffold75G24961 Striga asiatica HOM05D007762 ORTHO05D008066 2.2e-06 57.0 217 26.7
CARHR131870 Cardamine hirsuta HOM05D005320 ORTHO05D008066 3.7e-06 56.2 125 37.6
HanXRQChr01g0001221 Helianthus annuus HOM05D007762 ORTHO05D008066 6.4e-06 55.5 55 56.4
Sp4g20050 Schrenkiella parvula HOM05D005320 ORTHO05D008066 8.3e-06 55.1 212 27.8


User provided reference genes

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