Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G175800 Glycine max HOM05D007485 ORTHO05D009437 1.9e-90 335.9 173 100.0
Glyma.08G357300 Glycine max HOM05D007485 ORTHO05D009437 5.1e-80 301.2 178 90.4
Phvul.008G122300 Phaseolus vulgaris HOM05D007485 ORTHO05D009437 3.6e-70 268.5 178 82.0
VMungo1383G3371 Vigna mungo HOM05D007485 ORTHO05D009437 9.9e-68 260.4 178 80.3
Lj1g0002217 Lotus japonicus HOM05D007485 ORTHO05D009437 1.1e-63 246.9 179 74.3
Lalb_Chr19g0125461 Lupinus albus HOM05D007485 ORTHO05D009437 8.1e-62 240.7 174 74.1
Medtr7g059255 Medicago truncatula HOM05D007485 ORTHO05D009437 3.1e-61 238.8 175 74.9
arahy.Tifrunner.gnm1.ann1.9XF3L6 Arachis hypogaea HOM05D007485 ORTHO05D009437 1.6e-57 226.5 181 69.6
arahy.Tifrunner.gnm1.ann1.W4TMFE Arachis hypogaea HOM05D007485 ORTHO05D009437 1.1e-53 213.8 212 60.4
MD05G1180900 Malus domestica HOM05D007485 ORTHO05D009437 4.6e-49 198.4 183 61.2
MD10G1169600 Malus domestica HOM05D007485 ORTHO05D009437 2.5e-47 192.6 183 60.1
Duzib133G1001 Durio zibethinus HOM05D007485 ORTHO05D009437 9.7e-47 190.7 179 62.6
Atru.chr5.1880 Acer truncatum HOM05D007485 ORTHO05D009437 1.6e-46 189.9 187 56.1
Prupe.8G207500 Prunus persica HOM05D007485 ORTHO05D009437 3.7e-46 188.7 183 57.9
Haze_24766 Corylus avellana HOM05D007485 ORTHO05D009437 6.3e-46 188.0 180 58.9
Gohir.A07G201700 Gossypium hirsutum HOM05D007485 ORTHO05D009437 6.3e-46 188.0 179 59.8
Thecc.01G230100 Theobroma cacao HOM05D007485 ORTHO05D009437 6.3e-46 188.0 179 60.9
Gohir.D07G208000 Gossypium hirsutum HOM05D007485 ORTHO05D009437 2.4e-45 186.0 179 59.2
RcHm_v2.0_Chr6g0285341 Rosa chinensis HOM05D007485 ORTHO05D009437 5.3e-45 184.9 186 59.7
Potri.002G251800 Populus trichocarpa HOM05D007485 ORTHO05D009437 2.6e-44 182.6 149 65.1
Cfa002536 Carpinus fangiana HOM05D001836 ORTHO05D001519 4.5e-44 181.8 180 58.9
TWI59G0176 Tripterygium wilfordii HOM05D007485 ORTHO05D009437 1.3e-43 180.3 178 57.3
CiPaw.03G152400 Carya illinoinensis HOM05D007485 ORTHO05D009437 1.7e-43 179.9 178 58.4
FvH4_2g19580 Fragaria vesca HOM05D007485 ORTHO05D009437 2.5e-42 176.0 182 57.7
Ciclev10022604m.g Citrus clementina HOM05D007485 ORTHO05D009437 5.5e-42 174.9 173 55.5
Gorai.001G234600 Gossypium raimondii HOM05D007485 ORTHO05D009437 7.2e-42 174.5 194 54.1
FAN24G1628 Fragaria x ananassa HOM05D007485 ORTHO05D009437 1.6e-41 173.3 182 57.7
FAN27G2610 Fragaria x ananassa HOM05D007485 ORTHO05D009437 1.6e-41 173.3 182 57.1
CSS0034782 Camellia sinensis var. sinensis HOM05D007485 ORTHO05D009437 2.3e-40 169.5 178 53.4
PGR083G2217 Punica granatum HOM05D007485 ORTHO05D009437 6.7e-40 167.9 154 59.7
FAN15G2643 Fragaria x ananassa HOM05D007485 ORTHO05D009437 1.1e-39 167.2 182 56.0
THA.LOC104808772 Tarenaya hassleriana HOM05D007485 ORTHO05D009437 1.1e-39 167.2 155 58.1
TPR.G9157 Trifolium pratense HOM05D007485 ORTHO05D009437 1.1e-39 167.2 103 83.5
MSTRG.18375 Avicennia marina HOM05D007485 ORTHO05D009437 3.3e-39 165.6 169 53.3
Manes.12G043200 Manihot esculenta HOM05D007485 ORTHO05D009437 9.7e-39 164.1 181 54.1
Cc01_g17350 Coffea canephora HOM05D007485 ORTHO05D009437 2.2e-38 162.9 169 52.7
Actinidia37576 Actinidia chinensis HOM05D007485 ORTHO05D009437 3.7e-38 162.2 147 60.5
Nn1g03123 Nelumbo nucifera HOM05D007485 ORTHO05D009437 8.2e-38 161.0 148 60.8
Peaxi162Scf00499g00019 Petunia axillaris HOM05D007485 ORTHO05D009437 1.1e-37 160.6 150 61.3
Sopen06g002830 Solanum pennellii HOM05D007485 ORTHO05D009437 1.1e-37 160.6 144 60.4
AL9U10750 Arabidopsis lyrata HOM05D007485 ORTHO05D009437 3.1e-37 159.1 150 58.0
Thhalv10026377m.g Eutrema salsugineum HOM05D007485 ORTHO05D009437 4.1e-37 158.7 150 57.3
Migut.D00513 Erythranthe guttata HOM05D007485 ORTHO05D009437 5.3e-37 158.3 147 59.2
Solyc06g007990.4 Solanum lycopersicum HOM05D007485 ORTHO05D009437 5.3e-37 158.3 152 55.3
GSVIVG01028546001 Vitis vinifera HOM05D007485 ORTHO05D009437 5.3e-37 158.3 151 58.9
CAN.G322.118 Capsicum annuum HOM05D007485 ORTHO05D009437 6.9e-37 157.9 151 56.3
Sp7g10710 Schrenkiella parvula HOM05D007485 ORTHO05D009437 1.2e-36 157.1 152 56.6
C08p14780 Brassica napus HOM05D007485 ORTHO05D009437 2.0e-36 156.4 152 59.2
BcaC07g38678 Brassica carinata HOM05D007485 ORTHO05D009437 3.4e-36 155.6 152 59.2
BolC8t49113H Brassica oleracea HOM05D007485 ORTHO05D009437 3.4e-36 155.6 152 59.2
CANSAT01G1289 Cannabis sativa HOM05D007485 ORTHO05D009437 3.4e-36 155.6 186 50.0
AT4G13220 Arabidopsis thaliana HOM05D007485 ORTHO05D009437 4.5e-36 155.2 150 57.3
Carub.0007s2945 Capsella rubella HOM05D007485 ORTHO05D009437 5.9e-36 154.8 150 57.3
CARHR218700 Cardamine hirsuta HOM05D007485 ORTHO05D009437 5.9e-36 154.8 150 57.3
Rhsim13G0042600 Rhododendron simsii HOM05D007485 ORTHO05D009437 5.9e-36 154.8 149 59.7
A08p33350 Brassica napus HOM05D007485 ORTHO05D009437 1.3e-35 153.7 153 58.2
BraA08t35252Z Brassica rapa HOM05D007485 ORTHO05D009437 1.7e-35 153.3 152 58.6
Nitab4.5_0001740g0030 Nicotiana tabacum HOM05D007485 ORTHO05D009437 5.0e-35 151.8 153 54.2
Eucgr.C02436 Eucalyptus grandis HOM05D007485 ORTHO05D009437 1.1e-34 150.6 132 63.6
BcaB03g13243 Brassica carinata HOM05D007485 ORTHO05D009437 1.4e-34 150.2 153 56.2
SalBow6G3754 Salvia bowleyana HOM05D007485 ORTHO05D009437 2.5e-34 149.4 169 49.7
CARHR126310 Cardamine hirsuta HOM05D007485 ORTHO05D009437 4.2e-34 148.7 150 55.3
CsaV3_3G028690 Cucumis sativus L. HOM05D007485 ORTHO05D009437 1.2e-33 147.1 178 49.4
SGA_v2.0_scaffold1G00709 Striga asiatica HOM05D007485 ORTHO05D009437 1.6e-33 146.7 174 47.1
Aa31LG9G4570 Aethionema arabicum HOM05D007485 ORTHO05D009437 1.4e-32 143.7 145 55.9
Lsat_1_v5_gn_9_12821 Lactuca sativa HOM05D007485 ORTHO05D009437 2.3e-32 142.9 141 54.6
EL10Ac7g17803 Beta vulgaris HOM05D007485 ORTHO05D009437 3.0e-32 142.5 149 54.4
MBI10_g09190_MAGBIO Magnolia biondii HOM05D007485 ORTHO05D009437 3.9e-32 142.1 150 54.7
Psat0s3317g0040 Pisum sativum HOM05D007485 ORTHO05D009437 3.9e-32 142.1 131 63.4
Os12g0276100 Oryza sativa ssp. japonica HOM05D007485 ORTHO05D009437 2.2e-30 136.3 123 60.2
HPP92_025808 Vanilla planifolia HOM05D007485 ORTHO05D009437 2.2e-30 136.3 116 60.3
MELO3C012792.2 Cucumis melo HOM05D007485 ORTHO05D009437 3.7e-30 135.6 180 46.7
QL09p044412 Quercus lobata HOM05D007485 ORTHO05D009437 4.8e-30 135.2 136 57.4
Aqoxy2G03844 Aquilegia oxysepala HOM05D007485 ORTHO05D009437 8.2e-30 134.4 127 58.3
ECA247G1773 Erigeron canadensis HOM05D007485 ORTHO05D009437 2.4e-29 132.9 123 58.5
PGSC0003DMG400014703 Solanum tuberosum HOM05D007485 ORTHO05D009437 4.1e-29 132.1 102 63.7
PSO017G5507 Papaver somniferum HOM05D007485 ORTHO05D009437 1.5e-28 130.2 126 57.1
HanXRQChr15g0468381 Helianthus annuus HOM05D007485 ORTHO05D009437 2.0e-28 129.8 149 53.0
Sc05g0002340 Simmondsia chinensis HOM05D007485 ORTHO05D009437 2.0e-28 129.8 173 45.7
unitig_0.g180 Utricularia gibba HOM05D007485 ORTHO05D009437 5.9e-28 128.3 139 51.1
Sed0027911 Sechium edule HOM05D007485 ORTHO05D009437 3.8e-27 125.6 225 40.4
vmacro02738 Vaccinium macrocarpon HOM05D007485 ORTHO05D009437 3.8e-27 125.6 205 42.4
AUR62008887 Chenopodium quinoa HOM05D007485 ORTHO05D009437 1.9e-26 123.2 132 51.5
COL.COLO4_36853 Corchorus olitorius HOM05D007485 ORTHO05D009437 1.9e-26 123.2 131 57.3
PSO063G7151 Papaver somniferum HOM05D007485 ORTHO05D009437 7.2e-26 121.3 125 55.2
AUR62031821 Chenopodium quinoa HOM05D007485 ORTHO05D009437 3.6e-25 119.0 165 43.0
Zm00001eb102490 Zea mays HOM05D007485 ORTHO05D009437 8.0e-25 117.9 124 52.4
CDE12G0678 Ceratophyllum demersum HOM05D007485 ORTHO05D009437 1.0e-24 117.5 131 48.9
Zm00001eb317800 Zea mays HOM05D007485 ORTHO05D009437 4.0e-24 115.5 119 51.3
TPR.G23276 Trifolium pratense HOM05D000033 ORTHO05D007915 4.2e-18 95.5 80 65.0
QL09p045086 Quercus lobata HOM05D007485 ORTHO05D009437 1.4e-16 90.5 59 78.0
Pp3c25_600 Physcomitrium patens HOM05D007485 ORTHO05D009437 9.8e-15 84.3 115 44.3
ATR0088G060 Amborella trichopoda HOM05D007485 ORTHO05D009437 4.8e-14 82.0 58 67.2
Hund18369 Selenicereus undatus HOM05D007485 ORTHO05D009437 4.1e-13 79.0 129 42.6
Ca_22684_v3 Cicer arietinum L. HOM05D007485 ORTHO05D009437 1.7e-11 73.6 68 66.2
HanXRQChr12g0377041 Helianthus annuus HOM05D007485 ORTHO05D009437 1.5e-10 70.5 59 62.7
THA.LOC104804650 Tarenaya hassleriana HOM05D007485 ORTHO05D009437 5.5e-10 68.6 72 51.4
ClCG07G001710 Citrullus lanatus HOM05D007485 ORTHO05D009437 8.0e-09 64.7 100 44.0
Nitab4.5_0003180g0040 Nicotiana tabacum HOM05D007485 ORTHO05D009437 8.8e-08 61.2 100 42.0
Cre16.g687200 Chlamydomonas reinhardtii HOM05D007485 ORTHO05D009437 3.7e-06 55.8 138 29.0
Mapoly0101s0026 Marchantia polymorpha HOM05D007485 ORTHO05D009437 6.3e-06 55.1 73 43.8


User provided reference genes

Program Settings