Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G174100 Glycine max HOM05D008911 ORTHO05D010818 1.6e-167 592.8 321 100.0
Glyma.18G173900 Glycine max HOM05D008911 ORTHO05D010818 8.4e-121 437.6 252 90.9
Glyma.18G174000 Glycine max HOM05D008911 ORTHO05D010818 2.1e-116 422.9 243 88.1
Glyma.18G173700 Glycine max HOM05D008911 ORTHO05D010818 1.1e-115 420.6 251 94.8
Glyma.08G347200 Glycine max HOM05D008911 ORTHO05D010818 2.5e-64 250.0 293 57.3
Phvul.011G108200 Phaseolus vulgaris HOM05D008911 ORTHO05D010818 4.4e-37 159.5 231 43.3
Phvul.008G123933 Phaseolus vulgaris HOM05D008911 ORTHO05D010818 5.4e-35 152.5 233 39.1
Phvul.011G108400 Phaseolus vulgaris HOM05D008911 ORTHO05D010818 7.8e-34 148.7 247 41.3
arahy.Tifrunner.gnm1.ann1.FHHV9X Arachis hypogaea HOM05D008911 ORTHO05D010818 1.1e-27 128.3 138 48.6
arahy.Tifrunner.gnm1.ann1.1WNZ6F Arachis hypogaea HOM05D008911 ORTHO05D010818 3.2e-27 126.7 137 48.9
arahy.Tifrunner.gnm1.ann1.LA96E9 Arachis hypogaea HOM05D008911 ORTHO05D010818 1.6e-26 124.4 124 50.8
arahy.Tifrunner.gnm1.ann1.QNC19D Arachis hypogaea HOM05D008911 ORTHO05D010818 3.5e-26 123.2 138 47.1
arahy.Tifrunner.gnm1.ann1.00CGR0 Arachis hypogaea HOM05D008911 ORTHO05D010818 6.6e-25 119.0 126 49.2
arahy.Tifrunner.gnm1.ann1.368SCS Arachis hypogaea HOM05D008911 ORTHO05D010818 3.3e-24 116.7 126 48.4
arahy.Tifrunner.gnm1.ann1.KRWC22 Arachis hypogaea HOM05D008911 ORTHO05D010818 4.3e-24 116.3 160 40.6
arahy.Tifrunner.gnm1.ann1.32QDND Arachis hypogaea HOM05D008911 ORTHO05D010818 1.3e-23 114.8 125 46.4
Lalb_Chr00c01g0403771 Lupinus albus HOM05D008911 ORTHO05D010818 2.8e-23 113.6 166 38.6
Lj1g0019231 Lotus japonicus HOM05D008911 ORTHO05D010818 1.4e-22 111.3 122 50.0
Lj3g0024339 Lotus japonicus HOM05D008911 ORTHO05D010818 1.3e-20 104.8 141 43.3
Ca_22775_v3 Cicer arietinum L. HOM05D008911 ORTHO05D010818 1.7e-20 104.4 148 42.6
Ca_22776_v3 Cicer arietinum L. HOM05D008911 ORTHO05D010818 1.7e-20 104.4 148 42.6
Medtr8g081520 Medicago truncatula HOM05D008911 ORTHO05D010818 2.2e-20 104.0 138 44.2
Medtr0702s0010 Medicago truncatula HOM05D008911 ORTHO05D010818 2.9e-20 103.6 138 44.2
Medtr0702s0020 Medicago truncatula HOM05D008911 ORTHO05D010818 3.8e-20 103.2 136 44.9
Medtr0662s0020 Medicago truncatula HOM05D008911 ORTHO05D010818 8.4e-20 102.1 145 42.1
Ca_24126_v3 Cicer arietinum L. HOM05D008911 ORTHO05D010818 1.1e-19 101.7 159 43.4
Ca_24129_v3 Cicer arietinum L. HOM05D008911 ORTHO05D010818 4.2e-19 99.8 143 44.8
Ca_24128_v3 Cicer arietinum L. HOM05D008911 ORTHO05D010818 9.3e-19 98.6 143 44.8
TPR.G15295 Trifolium pratense HOM05D008911 ORTHO05D010818 9.3e-19 98.6 154 40.9
VMungo1383G1256 Vigna mungo HOM05D008911 ORTHO05D010818 1.6e-18 97.8 130 43.8
Ca_07510_v3 Cicer arietinum L. HOM05D008911 ORTHO05D010818 2.7e-18 97.1 159 42.8
Medtr7g057460 Medicago truncatula HOM05D016779 ORTHO05D010818 2.3e-17 94.0 138 39.1
Medtr7g057480 Medicago truncatula HOM05D016779 ORTHO05D010818 2.3e-17 94.0 138 39.1
Medtr0637s0010 Medicago truncatula HOM05D016779 ORTHO05D010818 1.1e-16 91.7 142 39.4
arahy.Tifrunner.gnm1.ann1.I9F5AW Arachis hypogaea HOM05D008911 ORTHO05D010818 2.5e-16 90.5 126 40.5
arahy.Tifrunner.gnm1.ann1.A6C13D Arachis hypogaea HOM05D008911 ORTHO05D010818 7.3e-16 89.0 123 38.2
Medtr4g039410 Medicago truncatula HOM05D016779 ORTHO05D010818 7.3e-16 89.0 155 36.1
arahy.Tifrunner.gnm1.ann1.IH53PY Arachis hypogaea HOM05D008911 ORTHO05D010818 8.1e-15 85.5 96 43.8
arahy.Tifrunner.gnm1.ann1.7Q90JW Arachis hypogaea HOM05D000336 ORTHO05D018477 1.3e-12 78.2 137 38.7
arahy.Tifrunner.gnm1.ann1.UZ271C Arachis hypogaea HOM05D002216 ORTHO05D002011 2.9e-12 77.0 137 40.1
Duzib160G0793 Durio zibethinus HOM05D000336 ORTHO05D000593 1.9e-11 74.3 126 38.1
Os07g0507700 Oryza sativa ssp. japonica HOM05D000336 ORTHO05D000593 1.9e-11 74.3 164 31.7
Psat0s3118g0120 Pisum sativum HOM05D008911 ORTHO05D010818 1.9e-11 74.3 116 39.7
Gohir.A05G151900 Gossypium hirsutum HOM05D000336 ORTHO05D000593 2.4e-11 73.9 166 33.7
Gohir.D05G154300 Gossypium hirsutum HOM05D000336 ORTHO05D000593 3.2e-11 73.6 166 35.5
Gorai.009G158600 Gossypium raimondii HOM05D000336 ORTHO05D000593 3.2e-11 73.6 166 35.5
Potri.011G077100 Populus trichocarpa HOM05D000336 ORTHO05D000593 3.2e-11 73.6 140 34.3
COL.COLO4_22813 Corchorus olitorius HOM05D000336 ORTHO05D000593 5.4e-11 72.8 142 38.0
QL05p052872 Quercus lobata HOM05D000336 ORTHO05D000593 5.4e-11 72.8 145 37.2
Sabra16G0233800 Salix brachista HOM05D000336 ORTHO05D000593 1.2e-10 71.6 140 34.3
MELO3C007177.2 Cucumis melo HOM05D000336 ORTHO05D000593 1.6e-10 71.2 125 36.0
Duzib235G1112 Durio zibethinus HOM05D000336 ORTHO05D000593 2.7e-10 70.5 138 34.8
Psat2g118200 Pisum sativum HOM05D008911 ORTHO05D010818 2.7e-10 70.5 125 36.8
Ciclev10014673m.g Citrus clementina HOM05D000336 ORTHO05D000593 4.6e-10 69.7 114 36.0
Gohir.D10G033100 Gossypium hirsutum HOM05D000336 ORTHO05D000593 4.6e-10 69.7 126 36.5
Gohir.A10G032300 Gossypium hirsutum HOM05D000336 ORTHO05D000593 7.9e-10 68.9 126 36.5
Gorai.011G034900 Gossypium raimondii HOM05D000336 ORTHO05D000593 7.9e-10 68.9 126 36.5
Thecc.06G159500 Theobroma cacao HOM05D000336 ORTHO05D000593 7.9e-10 68.9 129 36.4
Sabra11G0064100 Salix brachista HOM05D000336 ORTHO05D000593 1.3e-09 68.2 131 34.4
Glyma.13G222500 Glycine max HOM05D000336 ORTHO05D000593 1.8e-09 67.8 134 35.1
Cfa010551 Carpinus fangiana HOM05D000336 ORTHO05D000593 5.1e-09 66.2 139 34.5
arahy.Tifrunner.gnm1.ann1.PF0H12 Arachis hypogaea HOM05D021848 ORTHO05D018477 8.7e-09 65.5 157 35.0
CARHR075160 Cardamine hirsuta HOM05D000336 ORTHO05D002301 8.7e-09 65.5 133 34.6
Manes.15G116300 Manihot esculenta HOM05D000336 ORTHO05D000593 8.7e-09 65.5 126 36.5
unitig_62.g23365 Utricularia gibba HOM05D000336 ORTHO05D002301 8.7e-09 65.5 105 40.0
VMungo0464G1084 Vigna mungo HOM05D008911 ORTHO05D010818 1.1e-08 65.1 74 50.0
CSS0008730 Camellia sinensis var. sinensis HOM05D000336 ORTHO05D002301 2.5e-08 63.9 164 28.7
CSS0023926 Camellia sinensis var. sinensis HOM05D000336 ORTHO05D002301 3.3e-08 63.5 109 35.8
VMungo0540G0396 Vigna mungo HOM05D000336 ORTHO05D000593 3.3e-08 63.5 118 34.7
CSS0014275 Camellia sinensis var. sinensis HOM05D000336 ORTHO05D002301 5.6e-08 62.8 109 35.8
CSS0033954 Camellia sinensis var. sinensis HOM05D000336 ORTHO05D002301 7.4e-08 62.4 164 28.7
Phvul.006G168500 Phaseolus vulgaris HOM05D000336 ORTHO05D000593 1.6e-07 61.2 118 33.9
AT3G01770 Arabidopsis thaliana HOM05D000336 ORTHO05D002301 2.1e-07 60.8 128 33.6
Lj1g0013510 Lotus japonicus HOM05D000336 ORTHO05D002301 2.8e-07 60.5 102 34.3
Lj3g0003889 Lotus japonicus HOM05D000336 ORTHO05D018477 2.8e-07 60.5 119 31.9
GSVIVG01001835001 Vitis vinifera HOM05D000336 ORTHO05D002301 2.8e-07 60.5 103 35.0
AL3G10360 Arabidopsis lyrata HOM05D000336 ORTHO05D002301 3.7e-07 60.1 128 33.6
Ca_26940_v3 Cicer arietinum L. HOM05D000336 ORTHO05D002301 3.7e-07 60.1 107 33.6
Medtr3g075040 Medicago truncatula HOM05D000336 ORTHO05D002301 3.7e-07 60.1 103 33.0
Glyma.16G062200 Glycine max HOM05D000336 ORTHO05D002301 4.8e-07 59.7 102 35.3
THA.LOC104798953 Tarenaya hassleriana HOM05D000336 ORTHO05D002301 6.2e-07 59.3 103 35.0
Glyma.19G084600 Glycine max HOM05D000336 ORTHO05D002301 8.1e-07 58.9 107 32.7
Lalb_Chr23g0273531 Lupinus albus HOM05D000336 ORTHO05D002301 8.1e-07 58.9 102 33.3
Nn3g16544 Nelumbo nucifera HOM05D000336 ORTHO05D002301 8.1e-07 58.9 145 29.7
PGSC0003DMG400015197 Solanum tuberosum HOM05D000336 ORTHO05D002301 8.1e-07 58.9 131 32.8
AagrBONN_evm.TU.Sc2ySwM_117.2756 Anthoceros agrestis HOM05D000336 ORTHO05D000593 1.1e-06 58.5 162 32.7
MBI11_g00918_MAGBIO Magnolia biondii HOM05D000336 ORTHO05D002301 1.1e-06 58.5 103 35.9
DCAR_013143 Daucus carota HOM05D000336 ORTHO05D000593 1.4e-06 58.2 117 30.8
MD10G1268800 Malus domestica HOM05D000336 ORTHO05D000593 1.4e-06 58.2 136 33.8
GSVIVG01008492001 Vitis vinifera HOM05D000336 ORTHO05D002301 1.4e-06 58.2 116 33.6
Aqoxy3G01450 Aquilegia oxysepala HOM05D000336 ORTHO05D002301 1.8e-06 57.8 103 34.0
TWI79G1028 Tripterygium wilfordii HOM05D000336 ORTHO05D002301 2.4e-06 57.4 118 33.1
Migut.H01976 Erythranthe guttata HOM05D000336 ORTHO05D000593 3.1e-06 57.0 103 31.1
Medtr3g028570 Medicago truncatula HOM05D021848 ORTHO05D018477 3.1e-06 57.0 131 34.4
Peaxi162Scf00027g00057 Petunia axillaris HOM05D000336 ORTHO05D000593 4.0e-06 56.6 157 25.5
Thhalv10003590m.g Eutrema salsugineum HOM05D000336 ORTHO05D002301 5.3e-06 56.2 103 31.1
Lj9A476T60 Lonicera japonica HOM05D000336 ORTHO05D002301 6.9e-06 55.8 103 32.0
Solyc07g062660.4 Solanum lycopersicum HOM05D000336 ORTHO05D000593 6.9e-06 55.8 103 32.0
Sopen07g030890 Solanum pennellii HOM05D000336 ORTHO05D000593 6.9e-06 55.8 103 32.0
BcaB04g19913 Brassica carinata HOM05D000336 ORTHO05D002301 9.0e-06 55.5 103 32.0
Lalb_Chr11g0069671 Lupinus albus HOM05D000336 ORTHO05D002301 9.0e-06 55.5 102 31.4
PGSC0003DMG401012433 Solanum tuberosum HOM05D000336 ORTHO05D000593 9.0e-06 55.5 103 32.0


User provided reference genes

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