Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G173700 Glycine max HOM05D008911 ORTHO05D010818 6.7e-152 540.8 304 100.0
Glyma.18G173900 Glycine max HOM05D008911 ORTHO05D010818 2.7e-116 422.5 251 88.0
Glyma.18G174100 Glycine max HOM05D008911 ORTHO05D010818 1.0e-115 420.6 251 94.8
Glyma.18G174000 Glycine max HOM05D008911 ORTHO05D010818 1.5e-111 406.8 243 84.8
Glyma.08G347200 Glycine max HOM05D008911 ORTHO05D010818 2.4e-61 240.0 294 51.7
Phvul.011G108200 Phaseolus vulgaris HOM05D008911 ORTHO05D010818 1.5e-34 151.0 230 41.7
Phvul.008G123933 Phaseolus vulgaris HOM05D008911 ORTHO05D010818 1.8e-32 144.1 233 36.5
Phvul.011G108400 Phaseolus vulgaris HOM05D008911 ORTHO05D010818 4.1e-32 142.9 247 40.5
arahy.Tifrunner.gnm1.ann1.FHHV9X Arachis hypogaea HOM05D008911 ORTHO05D010818 7.9e-28 128.6 139 51.1
arahy.Tifrunner.gnm1.ann1.1WNZ6F Arachis hypogaea HOM05D008911 ORTHO05D010818 8.8e-27 125.2 137 48.9
arahy.Tifrunner.gnm1.ann1.LA96E9 Arachis hypogaea HOM05D008911 ORTHO05D010818 1.5e-26 124.4 125 53.6
arahy.Tifrunner.gnm1.ann1.QNC19D Arachis hypogaea HOM05D008911 ORTHO05D010818 3.3e-26 123.2 139 49.6
arahy.Tifrunner.gnm1.ann1.00CGR0 Arachis hypogaea HOM05D008911 ORTHO05D010818 3.7e-25 119.8 126 50.0
arahy.Tifrunner.gnm1.ann1.368SCS Arachis hypogaea HOM05D008911 ORTHO05D010818 1.8e-24 117.5 126 49.2
arahy.Tifrunner.gnm1.ann1.KRWC22 Arachis hypogaea HOM05D008911 ORTHO05D010818 9.1e-24 115.2 126 47.6
Lj1g0019231 Lotus japonicus HOM05D008911 ORTHO05D010818 2.0e-23 114.0 120 51.7
arahy.Tifrunner.gnm1.ann1.32QDND Arachis hypogaea HOM05D008911 ORTHO05D010818 2.6e-23 113.6 125 46.4
Lalb_Chr00c01g0403771 Lupinus albus HOM05D008911 ORTHO05D010818 7.7e-23 112.1 153 38.6
Medtr0702s0020 Medicago truncatula HOM05D008911 ORTHO05D010818 9.4e-21 105.1 153 41.8
Lj3g0024339 Lotus japonicus HOM05D008911 ORTHO05D010818 1.2e-20 104.8 135 45.9
Medtr8g081520 Medicago truncatula HOM05D008911 ORTHO05D010818 1.6e-20 104.4 174 39.1
Ca_22775_v3 Cicer arietinum L. HOM05D008911 ORTHO05D010818 2.1e-20 104.0 148 42.6
Ca_22776_v3 Cicer arietinum L. HOM05D008911 ORTHO05D010818 2.1e-20 104.0 148 42.6
Medtr0702s0010 Medicago truncatula HOM05D008911 ORTHO05D010818 6.1e-20 102.4 138 44.2
Medtr0662s0020 Medicago truncatula HOM05D008911 ORTHO05D010818 1.4e-19 101.3 145 42.1
TPR.G15295 Trifolium pratense HOM05D008911 ORTHO05D010818 1.1e-18 98.2 154 40.3
Ca_24126_v3 Cicer arietinum L. HOM05D008911 ORTHO05D010818 1.5e-18 97.8 150 44.0
Ca_07510_v3 Cicer arietinum L. HOM05D008911 ORTHO05D010818 5.7e-18 95.9 142 42.3
Ca_24128_v3 Cicer arietinum L. HOM05D008911 ORTHO05D010818 5.7e-18 95.9 144 44.4
Ca_24129_v3 Cicer arietinum L. HOM05D008911 ORTHO05D010818 5.7e-18 95.9 144 43.1
Medtr0637s0010 Medicago truncatula HOM05D016779 ORTHO05D010818 5.7e-18 95.9 176 37.5
VMungo1383G1256 Vigna mungo HOM05D008911 ORTHO05D010818 1.7e-17 94.4 127 42.5
arahy.Tifrunner.gnm1.ann1.I9F5AW Arachis hypogaea HOM05D008911 ORTHO05D010818 2.2e-17 94.0 126 42.1
Medtr7g057460 Medicago truncatula HOM05D016779 ORTHO05D010818 1.8e-16 90.9 191 34.6
Medtr7g057480 Medicago truncatula HOM05D016779 ORTHO05D010818 1.8e-16 90.9 191 34.6
Medtr4g039410 Medicago truncatula HOM05D016779 ORTHO05D010818 2.4e-16 90.5 179 35.8
arahy.Tifrunner.gnm1.ann1.A6C13D Arachis hypogaea HOM05D008911 ORTHO05D010818 9.1e-16 88.6 123 38.2
arahy.Tifrunner.gnm1.ann1.IH53PY Arachis hypogaea HOM05D008911 ORTHO05D010818 7.7e-15 85.5 96 43.8
arahy.Tifrunner.gnm1.ann1.7Q90JW Arachis hypogaea HOM05D000336 ORTHO05D018477 5.5e-13 79.3 137 38.7
arahy.Tifrunner.gnm1.ann1.UZ271C Arachis hypogaea HOM05D002216 ORTHO05D002011 3.6e-12 76.6 137 39.4
QL05p052872 Quercus lobata HOM05D000336 ORTHO05D000593 4.7e-12 76.3 179 33.5
Psat0s3118g0120 Pisum sativum HOM05D008911 ORTHO05D010818 6.1e-12 75.9 122 39.3
Duzib160G0793 Durio zibethinus HOM05D000336 ORTHO05D000593 1.0e-11 75.1 126 38.1
Gohir.A05G151900 Gossypium hirsutum HOM05D000336 ORTHO05D000593 1.4e-11 74.7 125 39.2
Potri.011G077100 Populus trichocarpa HOM05D000336 ORTHO05D000593 1.4e-11 74.7 140 34.3
Gohir.D05G154300 Gossypium hirsutum HOM05D000336 ORTHO05D000593 1.8e-11 74.3 148 35.8
Gorai.009G158600 Gossypium raimondii HOM05D000336 ORTHO05D000593 1.8e-11 74.3 148 35.8
COL.COLO4_22813 Corchorus olitorius HOM05D000336 ORTHO05D000593 3.0e-11 73.6 140 38.6
MELO3C007177.2 Cucumis melo HOM05D000336 ORTHO05D000593 3.0e-11 73.6 125 36.8
Sabra16G0233800 Salix brachista HOM05D000336 ORTHO05D000593 6.7e-11 72.4 140 34.3
Ciclev10014673m.g Citrus clementina HOM05D000336 ORTHO05D000593 1.5e-10 71.2 114 36.8
Gohir.D10G033100 Gossypium hirsutum HOM05D000336 ORTHO05D000593 2.6e-10 70.5 126 36.5
Os07g0507700 Oryza sativa ssp. japonica HOM05D000336 ORTHO05D000593 2.6e-10 70.5 164 31.1
Duzib235G1112 Durio zibethinus HOM05D000336 ORTHO05D000593 3.3e-10 70.1 138 35.5
Psat2g118200 Pisum sativum HOM05D008911 ORTHO05D010818 3.3e-10 70.1 125 36.8
Gohir.A10G032300 Gossypium hirsutum HOM05D000336 ORTHO05D000593 4.4e-10 69.7 126 36.5
Gorai.011G034900 Gossypium raimondii HOM05D000336 ORTHO05D000593 4.4e-10 69.7 126 36.5
Thecc.06G159500 Theobroma cacao HOM05D000336 ORTHO05D000593 5.7e-10 69.3 128 36.7
Glyma.13G222500 Glycine max HOM05D000336 ORTHO05D000593 7.5e-10 68.9 134 35.8
Sabra11G0064100 Salix brachista HOM05D000336 ORTHO05D000593 7.5e-10 68.9 134 33.6
Manes.15G116300 Manihot esculenta HOM05D000336 ORTHO05D000593 3.7e-09 66.6 130 35.4
VMungo0540G0396 Vigna mungo HOM05D000336 ORTHO05D000593 1.1e-08 65.1 118 36.4
CSS0008730 Camellia sinensis var. sinensis HOM05D000336 ORTHO05D002301 1.8e-08 64.3 109 34.9
CSS0014275 Camellia sinensis var. sinensis HOM05D000336 ORTHO05D002301 1.8e-08 64.3 109 35.8
CSS0023926 Camellia sinensis var. sinensis HOM05D000336 ORTHO05D002301 1.8e-08 64.3 109 35.8
unitig_62.g23365 Utricularia gibba HOM05D000336 ORTHO05D002301 1.8e-08 64.3 113 37.2
arahy.Tifrunner.gnm1.ann1.PF0H12 Arachis hypogaea HOM05D021848 ORTHO05D018477 2.4e-08 63.9 154 34.4
PGSC0003DMG400015197 Solanum tuberosum HOM05D000336 ORTHO05D002301 2.4e-08 63.9 103 36.9
Nn3g16544 Nelumbo nucifera HOM05D000336 ORTHO05D002301 4.1e-08 63.2 125 32.8
CSS0033954 Camellia sinensis var. sinensis HOM05D000336 ORTHO05D002301 5.3e-08 62.8 109 34.9
Phvul.006G168500 Phaseolus vulgaris HOM05D000336 ORTHO05D000593 5.3e-08 62.8 118 35.6
VMungo0464G1084 Vigna mungo HOM05D008911 ORTHO05D010818 5.3e-08 62.8 74 47.3
CARHR075160 Cardamine hirsuta HOM05D000336 ORTHO05D002301 1.6e-07 61.2 151 31.1
THA.LOC104798953 Tarenaya hassleriana HOM05D000336 ORTHO05D002301 2.0e-07 60.8 103 35.9
GSVIVG01001835001 Vitis vinifera HOM05D000336 ORTHO05D002301 2.7e-07 60.5 103 35.0
Lj1g0013510 Lotus japonicus HOM05D000336 ORTHO05D002301 3.5e-07 60.1 102 34.3
Medtr3g075040 Medicago truncatula HOM05D000336 ORTHO05D002301 3.5e-07 60.1 103 33.0
AagrBONN_evm.TU.Sc2ySwM_117.2756 Anthoceros agrestis HOM05D000336 ORTHO05D000593 4.5e-07 59.7 130 34.6
Ca_26940_v3 Cicer arietinum L. HOM05D000336 ORTHO05D002301 4.5e-07 59.7 106 34.0
Glyma.16G062200 Glycine max HOM05D000336 ORTHO05D002301 5.9e-07 59.3 102 35.3
MBI11_g00918_MAGBIO Magnolia biondii HOM05D000336 ORTHO05D002301 5.9e-07 59.3 103 36.9
GSVIVG01008492001 Vitis vinifera HOM05D000336 ORTHO05D002301 5.9e-07 59.3 128 34.4
MD10G1268800 Malus domestica HOM05D000336 ORTHO05D000593 7.7e-07 58.9 136 33.8
DCAR_013143 Daucus carota HOM05D000336 ORTHO05D000593 1.0e-06 58.5 117 30.8
Migut.M00746 Erythranthe guttata HOM05D000336 ORTHO05D000593 1.0e-06 58.5 172 29.1
Glyma.19G084600 Glycine max HOM05D000336 ORTHO05D002301 1.0e-06 58.5 102 34.3
Lalb_Chr23g0273531 Lupinus albus HOM05D000336 ORTHO05D002301 1.0e-06 58.5 102 33.3
Aqoxy3G01450 Aquilegia oxysepala HOM05D000336 ORTHO05D002301 1.7e-06 57.8 103 34.0
Migut.H01976 Erythranthe guttata HOM05D000336 ORTHO05D000593 1.7e-06 57.8 103 31.1
COL.COLO4_16829 Corchorus olitorius HOM05D000336 ORTHO05D002301 2.9e-06 57.0 103 34.0
Thhalv10003590m.g Eutrema salsugineum HOM05D000336 ORTHO05D002301 2.9e-06 57.0 103 31.1
QL10p004732 Quercus lobata HOM05D000336 ORTHO05D002301 2.9e-06 57.0 121 30.6
TWI79G1028 Tripterygium wilfordii HOM05D000336 ORTHO05D002301 2.9e-06 57.0 103 35.0
Lj9A476T60 Lonicera japonica HOM05D000336 ORTHO05D002301 3.8e-06 56.6 146 28.8
Solyc07g062660.4 Solanum lycopersicum HOM05D000336 ORTHO05D000593 3.8e-06 56.6 103 32.0
Sopen07g030890 Solanum pennellii HOM05D000336 ORTHO05D000593 3.8e-06 56.6 103 32.0
EL10As4g23461 Beta vulgaris HOM05D000336 ORTHO05D002301 5.0e-06 56.2 144 29.9
BcaB04g19913 Brassica carinata HOM05D000336 ORTHO05D002301 5.0e-06 56.2 103 32.0
PGSC0003DMG401012433 Solanum tuberosum HOM05D000336 ORTHO05D000593 5.0e-06 56.2 103 32.0
BcaC04g23323 Brassica carinata HOM05D000336 ORTHO05D002301 6.5e-06 55.8 103 31.1
A09p08210 Brassica napus HOM05D000336 ORTHO05D002301 6.5e-06 55.8 103 31.1
C09p09280 Brassica napus HOM05D000336 ORTHO05D002301 6.5e-06 55.8 103 31.1
BraA09t36472Z Brassica rapa HOM05D000336 ORTHO05D002301 6.5e-06 55.8 103 31.1
Medtr3g028570 Medicago truncatula HOM05D021848 ORTHO05D018477 6.5e-06 55.8 142 27.5
Oeu051113.2 Olea europaea HOM05D000336 ORTHO05D000593 6.5e-06 55.8 151 29.8
Peaxi162Scf00027g00057 Petunia axillaris HOM05D000336 ORTHO05D000593 6.5e-06 55.8 103 31.1
SGA_v2.0_scaffold130G34319 Striga asiatica HOM05D000336 ORTHO05D000593 8.5e-06 55.5 103 30.1


User provided reference genes

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