Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G173300 Glycine max HOM05D000347 ORTHO05D008062 1.8e-159 565.8 287 100.0
Glyma.08G356200 Glycine max HOM05D000347 ORTHO05D008062 3.1e-143 511.9 289 92.7
Phvul.008G123300 Phaseolus vulgaris HOM05D000347 ORTHO05D008062 6.2e-123 444.5 291 81.4
VMungo1383G0854 Vigna mungo HOM05D000347 ORTHO05D008062 2.0e-121 439.5 289 81.7
Lj1g0023077 Lotus japonicus HOM05D000347 ORTHO05D008062 1.5e-92 343.6 288 68.4
Medtr0027s0180 Medicago truncatula HOM05D000347 ORTHO05D008062 2.3e-85 319.7 262 70.6
TPR.G15284 Trifolium pratense HOM05D000347 ORTHO05D008062 4.9e-80 302.0 290 64.1
Psat3g142320 Pisum sativum HOM05D000347 ORTHO05D008062 4.5e-73 278.9 289 59.5
Lalb_Chr01g0022451 Lupinus albus HOM05D000347 ORTHO05D008062 1.0e-69 267.7 288 56.2
Ca_07542_v3 Cicer arietinum L. HOM05D000347 ORTHO05D008062 1.0e-64 251.1 187 73.8
Eucgr.H00807 Eucalyptus grandis HOM05D000347 ORTHO05D008062 1.6e-62 243.8 289 51.9
Lalb_Chr03g0041901 Lupinus albus HOM05D000347 ORTHO05D008062 2.7e-62 243.0 254 60.2
Dinv19218 Davidia involucrata HOM05D000347 ORTHO05D008062 3.6e-62 242.7 289 52.9
Prupe.8G205000 Prunus persica HOM05D000347 ORTHO05D000694 1.8e-61 240.4 247 57.5
Manes.12G042000 Manihot esculenta HOM05D000347 ORTHO05D008062 5.1e-61 238.8 293 51.5
Medtr7g059080 Medicago truncatula HOM05D000347 ORTHO05D008062 3.3e-60 236.1 164 78.7
CiPaw.04G106800 Carya illinoinensis HOM05D000347 ORTHO05D000694 1.4e-58 230.7 285 49.8
FvH4_2g19360 Fragaria vesca HOM05D000347 ORTHO05D008062 1.5e-57 227.3 300 50.7
Thecc.01G228300 Theobroma cacao HOM05D000347 ORTHO05D008062 1.5e-57 227.3 290 52.1
RcHm_v2.0_Chr6g0285151 Rosa chinensis HOM05D000347 ORTHO05D008062 2.0e-57 226.9 296 49.7
Potri.002G240300 Populus trichocarpa HOM05D000347 ORTHO05D008062 5.9e-57 225.3 290 49.3
MD05G1178500 Malus domestica HOM05D000347 ORTHO05D008062 2.9e-56 223.0 301 49.8
Migut.D00520 Erythranthe guttata HOM05D000347 ORTHO05D008062 1.1e-55 221.1 298 48.3
FAN15G1475 Fragaria x ananassa HOM05D000347 ORTHO05D000694 2.5e-55 219.9 299 48.8
MD10G1166700 Malus domestica HOM05D000347 ORTHO05D008062 9.4e-55 218.0 296 47.6
FAN27G2014 Fragaria x ananassa HOM05D000347 ORTHO05D008062 1.6e-54 217.2 292 49.0
GSVIVG01028561001 Vitis vinifera HOM05D000347 ORTHO05D008062 4.7e-54 215.7 276 50.4
FAN24G2098 Fragaria x ananassa HOM05D000347 ORTHO05D000694 6.7e-53 211.8 226 57.1
Ciclev10021356m.g Citrus clementina HOM05D000347 ORTHO05D008062 8.8e-53 211.5 303 47.9
PGR083G0949 Punica granatum HOM05D000347 ORTHO05D008062 1.5e-52 210.7 291 48.1
arahy.Tifrunner.gnm1.ann1.W0YDFD Arachis hypogaea HOM05D000347 ORTHO05D008062 2.2e-51 206.8 298 50.0
Cc01_g17250 Coffea canephora HOM05D000347 ORTHO05D008062 1.4e-50 204.1 301 49.2
Medtr0027s0200 Medicago truncatula HOM05D000347 ORTHO05D008062 4.1e-50 202.6 192 65.1
TWI18G0408 Tripterygium wilfordii HOM05D000347 ORTHO05D008062 1.5e-49 200.7 340 41.2
Hma1.2p1_0351F.1_g132820 Hydrangea macrophylla HOM05D000347 ORTHO05D008062 5.9e-49 198.7 281 47.0
QL09p044668 Quercus lobata HOM05D000347 ORTHO05D008062 1.3e-48 197.6 188 62.2
Nn1g07779 Nelumbo nucifera HOM05D000347 ORTHO05D008062 2.5e-47 193.4 300 43.3
MSTRG.21431 Avicennia marina HOM05D000347 ORTHO05D008062 3.2e-47 193.0 298 45.6
TAR365G0021 Trochodendron aralioides HOM05D000347 ORTHO05D008062 4.2e-47 192.6 302 40.4
Sabra02G0183100 Salix brachista HOM05D000347 ORTHO05D008062 7.2e-47 191.8 250 48.8
TAR636G2566 Trochodendron aralioides HOM05D000347 ORTHO05D008062 6.1e-46 188.7 300 42.0
Glyma.16G094000 Glycine max HOM05D000347 ORTHO05D008062 8.0e-46 188.3 292 43.8
CANSAT01G0926 Cannabis sativa HOM05D000347 ORTHO05D008062 2.3e-45 186.8 312 42.6
Cpa.g.sc8.175 Carica papaya HOM05D000347 ORTHO05D008062 2.3e-45 186.8 306 43.5
Actinidia23733 Actinidia chinensis HOM05D000347 ORTHO05D008062 3.0e-45 186.4 291 46.4
Gohir.D11G142500 Gossypium hirsutum HOM05D000347 ORTHO05D008062 3.0e-45 186.4 293 45.4
Gorai.007G152800 Gossypium raimondii HOM05D000347 ORTHO05D008062 8.8e-45 184.9 292 45.2
Gohir.A11G136100 Gossypium hirsutum HOM05D000347 ORTHO05D008062 1.1e-44 184.5 293 45.1
arahy.Tifrunner.gnm1.ann1.54FW37 Arachis hypogaea HOM05D000347 ORTHO05D008062 4.4e-44 182.6 257 49.8
TAR365G1261 Trochodendron aralioides HOM05D000347 ORTHO05D008062 7.4e-44 181.8 315 39.4
SGA_v2.0_scaffold1G00715 Striga asiatica HOM05D000347 ORTHO05D008062 1.4e-42 177.6 292 43.2
Solyc09g061715.1 Solanum lycopersicum HOM05D000347 ORTHO05D008062 3.1e-42 176.4 233 51.1
Sopen09g024710 Solanum pennellii HOM05D000347 ORTHO05D008062 3.1e-42 176.4 233 51.1
CSS0034279 Camellia sinensis var. sinensis HOM05D000347 ORTHO05D008062 1.2e-41 174.5 189 55.0
CiPaw.03G151400 Carya illinoinensis HOM05D000347 ORTHO05D008062 2.2e-40 170.2 186 57.0
Sed0024927 Sechium edule HOM05D000901 ORTHO05D008062 6.5e-40 168.7 296 41.2
CsaV3_3G028770 Cucumis sativus L. HOM05D000347 ORTHO05D008062 1.2e-38 164.5 298 39.6
Lj3g0009150 Lotus japonicus HOM05D000347 ORTHO05D008062 1.6e-38 164.1 288 43.4
Sopen06g034940 Solanum pennellii HOM05D000347 ORTHO05D008062 2.1e-38 163.7 292 40.4
Actinidia37581 Actinidia chinensis HOM05D000347 ORTHO05D008062 4.0e-37 159.5 187 55.1
SalBow4G1846 Salvia bowleyana HOM05D000347 ORTHO05D008062 8.8e-37 158.3 182 53.3
PGSC0003DMG400020089 Solanum tuberosum HOM05D007853 ORTHO05D009873 1.5e-36 157.5 284 40.1
VMungo0331G1006 Vigna mungo HOM05D000347 ORTHO05D008062 3.4e-36 156.4 288 40.3
Sed0024241 Sechium edule HOM05D000347 ORTHO05D008062 1.3e-35 154.5 283 39.2
Haze_24776 Corylus avellana HOM05D000347 ORTHO05D008062 3.7e-35 152.9 197 51.3
Nitab4.5_0000866g0010 Nicotiana tabacum HOM05D000347 ORTHO05D008062 4.8e-35 152.5 287 43.2
Solyc06g083560.3 Solanum lycopersicum HOM05D000347 ORTHO05D008062 4.8e-35 152.5 292 39.7
ClCG07G001810 Citrullus lanatus HOM05D006129 ORTHO05D007446 1.4e-34 151.0 285 40.0
Actinidia30090 Actinidia chinensis HOM05D000347 ORTHO05D008062 1.8e-34 150.6 188 55.9
HanXRQChr01g0014681 Helianthus annuus HOM05D000347 ORTHO05D008062 3.1e-34 149.8 187 49.2
Aqoxy2G03776 Aquilegia oxysepala HOM05D000347 ORTHO05D008062 4.1e-34 149.4 302 38.4
Rhsim13G0044000 Rhododendron simsii HOM05D000347 ORTHO05D008062 1.2e-33 147.9 186 52.7
Oeu018505.1 Olea europaea HOM05D000879 ORTHO05D002043 1.6e-33 147.5 156 57.1
Phvul.010G019300 Phaseolus vulgaris HOM05D000347 ORTHO05D008062 3.2e-31 139.8 280 40.7
Sc05g0002410 Simmondsia chinensis HOM05D000347 ORTHO05D008062 1.8e-29 134.0 294 38.8
MELO3C018065.2 Cucumis melo HOM05D000347 ORTHO05D008062 2.3e-29 133.7 193 46.1
Gohir.D08G211800 Gossypium hirsutum HOM05D000347 ORTHO05D008062 2.3e-29 133.7 299 36.5
Peaxi162Scf02141g00004 Petunia axillaris HOM05D000347 ORTHO05D008062 1.2e-28 131.3 166 45.2
PGSC0003DMG400003422 Solanum tuberosum HOM05D000347 ORTHO05D008062 1.5e-28 131.0 172 50.0
vmacro02746 Vaccinium macrocarpon HOM05D000347 ORTHO05D008062 2.0e-28 130.6 162 51.9
Phvul.010G019000 Phaseolus vulgaris HOM05D000347 ORTHO05D008062 2.6e-28 130.2 216 46.3
Gohir.A08G194000 Gossypium hirsutum HOM05D000347 ORTHO05D008062 1.3e-27 127.9 299 35.5
Gorai.004G225100 Gossypium raimondii HOM05D000347 ORTHO05D008062 1.7e-27 127.5 298 35.9
Ah.08g214040 Amaranthus hybridus HOM05D000901 ORTHO05D008062 9.1e-26 121.7 269 36.4
Lsat_1_v5_gn_5_179760 Lactuca sativa HOM05D000347 ORTHO05D008062 5.9e-25 119.0 192 43.8
AUR62031831 Chenopodium quinoa HOM05D000347 ORTHO05D008062 5.0e-24 115.9 196 41.8
DCAR_018551 Daucus carota HOM05D000347 ORTHO05D008062 5.5e-23 112.5 192 44.8
DCAR_004713 Daucus carota HOM05D000347 ORTHO05D008062 6.1e-22 109.0 173 44.5
Nitab4.5_0003790g0070 Nicotiana tabacum HOM05D000347 ORTHO05D008062 1.0e-21 108.2 115 56.5
Nitab4.5_0002085g0080 Nicotiana tabacum HOM05D000347 ORTHO05D008062 2.0e-20 104.0 247 34.0
Peaxi162Scf00517g00428 Petunia axillaris HOM05D000347 ORTHO05D008062 3.4e-20 103.2 213 39.4
Atru.chr5.2056 Acer truncatum HOM05D000347 ORTHO05D008062 1.1e-18 98.2 116 51.7
Carub.0003s2514 Capsella rubella HOM05D011699 ORTHO05D008062 1.2e-17 94.7 299 32.8
Nn3g19918 Nelumbo nucifera HOM05D000347 ORTHO05D008062 1.2e-17 94.7 193 35.2
MBI07_g21075_MAGBIO Magnolia biondii HOM05D000347 ORTHO05D008062 1.6e-17 94.4 177 42.4
BcaB06g26692 Brassica carinata HOM05D011699 ORTHO05D008062 4.5e-17 92.8 284 31.0
A07p07520 Brassica napus HOM05D011699 ORTHO05D008062 7.8e-17 92.0 286 31.5
BraA07t28543Z Brassica rapa HOM05D011699 ORTHO05D008062 7.8e-17 92.0 286 31.5
AUR62008877 Chenopodium quinoa HOM05D000347 ORTHO05D008062 1.0e-16 91.7 155 41.3
Sc24g0003600 Simmondsia chinensis HOM05D000347 ORTHO05D008062 1.3e-16 91.3 123 47.2
THA.LOC104821644 Tarenaya hassleriana HOM05D000347 ORTHO05D008062 2.3e-16 90.5 163 42.9
C07p11290 Brassica napus HOM05D011699 ORTHO05D008062 2.5e-15 87.0 292 29.8
BcaC06g35749 Brassica carinata HOM05D011699 ORTHO05D008062 3.3e-15 86.7 287 31.0
AL3G40480 Arabidopsis lyrata HOM05D011699 ORTHO05D008062 9.5e-15 85.1 307 31.6
BolC7t41607H Brassica oleracea HOM05D011699 ORTHO05D008062 9.5e-15 85.1 284 30.3
AT3G24750 Arabidopsis thaliana HOM05D011699 ORTHO05D008062 1.6e-14 84.3 222 34.7
PSO017G1362 Papaver somniferum HOM05D000347 ORTHO05D008062 2.1e-14 84.0 232 37.5
Oeu058867.1 Olea europaea HOM05D000347 ORTHO05D008062 6.1e-14 82.4 80 58.8
SalBow2G2623 Salvia bowleyana HOM05D000347 ORTHO05D008062 1.0e-13 81.6 292 30.8
SGA_v2.0_scaffold8G04652 Striga asiatica HOM05D005470 ORTHO05D006855 4.0e-13 79.7 131 41.2
PSO063G6109 Papaver somniferum HOM05D000347 ORTHO05D008062 4.4e-12 76.3 232 35.3
Sp3g22490 Schrenkiella parvula HOM05D011699 ORTHO05D008062 1.7e-11 74.3 285 29.5
EL10Ac7g17790 Beta vulgaris HOM05D000347 ORTHO05D008062 5.4e-10 69.3 243 30.9
CARHR101080 Cardamine hirsuta HOM05D011699 ORTHO05D008062 9.2e-10 68.6 289 27.7
Thhalv10002691m.g Eutrema salsugineum HOM05D011699 ORTHO05D008062 2.0e-09 67.4 149 38.9
ECA248G1409 Erigeron canadensis HOM05D000102 ORTHO05D000138 7.8e-09 65.5 77 49.4
THA.LOC104804603 Tarenaya hassleriana HOM05D000347 ORTHO05D008062 1.5e-07 61.2 305 27.9
Zm00001eb379630 Zea mays HOM05D042818 ORTHO05D008062 4.3e-07 59.7 192 34.4
unitig_8.g3754 Utricularia gibba HOM05D004922 ORTHO05D005990 2.8e-06 57.0 194 28.9
Nitab4.5_0006773g0040 Nicotiana tabacum HOM05D000347 ORTHO05D008062 8.0e-06 55.5 40 65.0


User provided reference genes

Program Settings