Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G172500 Glycine max HOM05D005470 ORTHO05D006855 1.2e-175 619.8 311 100.0
Phvul.007G209400 Phaseolus vulgaris HOM05D005470 ORTHO05D006855 1.1e-146 523.5 310 84.2
VMungo0516G0001 Vigna mungo HOM05D005470 ORTHO05D006855 3.3e-146 521.9 309 83.2
Lj1g0018515 Lotus japonicus HOM05D005470 ORTHO05D006855 4.6e-140 501.5 307 80.8
Psat3g144240 Pisum sativum HOM05D005470 ORTHO05D006855 2.0e-135 486.1 306 79.7
Ca_07533_v3 Cicer arietinum L. HOM05D005470 ORTHO05D006855 3.8e-134 481.9 313 78.0
arahy.Tifrunner.gnm1.ann1.07T9WF Arachis hypogaea HOM05D005470 ORTHO05D006855 1.9e-133 479.6 314 75.2
arahy.Tifrunner.gnm1.ann1.KE0QUS Arachis hypogaea HOM05D005470 ORTHO05D006855 3.5e-132 475.3 314 74.8
TPR.G15281 Trifolium pratense HOM05D005470 ORTHO05D006855 1.3e-131 473.4 306 77.1
Medtr7g058920 Medicago truncatula HOM05D005470 ORTHO05D006855 2.3e-131 472.6 306 77.5
QL03p049466 Quercus lobata HOM05D005470 ORTHO05D006855 2.5e-130 469.2 305 74.1
RcHm_v2.0_Chr6g0285101 Rosa chinensis HOM05D005470 ORTHO05D006855 4.3e-130 468.4 308 74.0
Lalb_Chr19g0125551 Lupinus albus HOM05D005470 ORTHO05D006855 5.6e-130 468.0 303 76.9
Haze_24781 Corylus avellana HOM05D005470 ORTHO05D006855 2.1e-129 466.1 317 71.0
Eucgr.H00804 Eucalyptus grandis HOM05D005470 ORTHO05D006855 8.1e-129 464.2 305 74.1
arahy.Tifrunner.gnm1.ann1.4GE7F8 Arachis hypogaea HOM05D005470 ORTHO05D006855 1.4e-128 463.4 314 73.6
CiPaw.04G106400 Carya illinoinensis HOM05D005470 ORTHO05D006855 1.8e-128 463.0 309 73.5
Potri.002G240800 Populus trichocarpa HOM05D005470 ORTHO05D006855 2.0e-127 459.5 312 72.8
Cpa.g.sc8.172 Carica papaya HOM05D005470 ORTHO05D006855 2.6e-127 459.1 311 73.0
FAN24G1307 Fragaria x ananassa HOM05D005470 ORTHO05D006855 4.5e-127 458.4 308 72.4
FvH4_2g19300 Fragaria vesca HOM05D005470 ORTHO05D006855 5.8e-127 458.0 308 72.1
MD10G1166100 Malus domestica HOM05D005470 ORTHO05D006855 5.8e-127 458.0 314 71.0
Sabra02G0183400 Salix brachista HOM05D005470 ORTHO05D006855 1.7e-126 456.4 312 73.4
Manes.12G042650 Manihot esculenta HOM05D005470 ORTHO05D006855 2.9e-126 455.7 314 71.0
TAR365G1033 Trochodendron aralioides HOM05D005470 ORTHO05D006855 3.8e-126 455.3 310 71.9
DCAR_018553 Daucus carota HOM05D005470 ORTHO05D006855 1.4e-125 453.4 296 75.0
Duzib211G0062 Durio zibethinus HOM05D005470 ORTHO05D006855 3.2e-125 452.2 315 70.2
PGR083G1301 Punica granatum HOM05D005470 ORTHO05D006855 7.1e-125 451.1 309 71.8
Thecc.01G227800 Theobroma cacao HOM05D005470 ORTHO05D006855 7.1e-125 451.1 315 69.5
Atru.chr5.1498 Acer truncatum HOM05D005470 ORTHO05D006855 2.1e-124 449.5 305 71.1
CSS0013378 Camellia sinensis var. sinensis HOM05D005470 ORTHO05D006855 4.6e-124 448.4 315 70.5
vmacro02749 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 1.8e-123 446.4 321 70.4
THA.LOC104802678 Tarenaya hassleriana HOM05D005470 ORTHO05D006855 3.9e-123 445.3 306 70.6
Nn3g19926 Nelumbo nucifera HOM05D005470 ORTHO05D006855 5.1e-123 444.9 322 68.3
Cc01_g17220 Coffea canephora HOM05D005470 ORTHO05D006855 6.7e-123 444.5 314 71.3
Sed0016487 Sechium edule HOM05D005470 ORTHO05D006855 8.7e-123 444.1 303 71.6
CANSAT56G1556 Cannabis sativa HOM05D005470 ORTHO05D006855 1.1e-122 443.7 315 69.8
Gohir.D07G162300 Gossypium hirsutum HOM05D005470 ORTHO05D006855 1.5e-122 443.4 319 68.7
Gorai.001G185900 Gossypium raimondii HOM05D005470 ORTHO05D006855 1.5e-122 443.4 319 68.7
MSTRG.21429 Avicennia marina HOM05D005470 ORTHO05D006855 2.5e-122 442.6 313 69.6
Hma1.2p1_1061F.1_g253380 Hydrangea macrophylla HOM05D005470 ORTHO05D006855 4.3e-122 441.8 315 69.2
ClCG07G001860 Citrullus lanatus HOM05D005470 ORTHO05D006855 5.6e-122 441.4 309 69.3
Dinv04663 Davidia involucrata HOM05D005470 ORTHO05D006855 9.6e-122 440.7 301 72.1
Sopen09g024670 Solanum pennellii HOM05D005470 ORTHO05D006855 1.3e-121 440.3 307 70.4
Gohir.A07G156000 Gossypium hirsutum HOM05D005470 ORTHO05D006855 1.6e-121 439.9 319 68.3
Actinidia37584 Actinidia chinensis HOM05D005470 ORTHO05D006855 2.1e-121 439.5 311 71.7
EL10Ac7g17787 Beta vulgaris HOM05D005470 ORTHO05D006855 2.1e-121 439.5 309 68.9
Rhsim13G0044300 Rhododendron simsii HOM05D006020 ORTHO05D006855 3.7e-121 438.7 299 73.2
Lj2A1133T34 Lonicera japonica HOM05D005470 ORTHO05D006855 4.8e-121 438.3 309 70.6
Solyc09g061680.3 Solanum lycopersicum HOM05D005470 ORTHO05D006855 4.8e-121 438.3 307 70.4
AUR62031834 Chenopodium quinoa HOM05D005470 ORTHO05D006855 1.1e-120 437.2 307 69.4
CsaV3_3G028840 Cucumis sativus L. HOM05D005470 ORTHO05D006855 3.1e-120 435.6 303 70.6
Migut.D00523 Erythranthe guttata HOM05D005470 ORTHO05D006855 3.1e-120 435.6 307 70.4
Nitab4.5_0000866g0080 Nicotiana tabacum HOM05D005470 ORTHO05D006855 4.0e-120 435.3 313 68.1
Nitab4.5_0000866g0040 Nicotiana tabacum HOM05D005470 ORTHO05D006855 1.2e-119 433.7 313 68.1
Oeu015466.1 Olea europaea HOM05D005470 ORTHO05D006855 1.2e-119 433.7 302 69.5
PSO478G2025 Papaver somniferum HOM05D005470 ORTHO05D006855 1.2e-119 433.7 305 69.5
PGSC0003DMG400002375 Solanum tuberosum HOM05D005470 ORTHO05D006855 1.5e-119 433.3 305 69.8
TWI75G1873 Tripterygium wilfordii HOM05D005470 ORTHO05D006855 1.5e-119 433.3 309 69.3
PSO017G3643 Papaver somniferum HOM05D005470 ORTHO05D006855 2.0e-119 433.0 305 69.5
Nitab4.5_0003790g0040 Nicotiana tabacum HOM05D005470 ORTHO05D006855 2.6e-119 432.6 313 67.7
Aa31sc866G40 Aethionema arabicum HOM05D005470 ORTHO05D006855 3.4e-119 432.2 306 69.3
Hund18358 Selenicereus undatus HOM05D005470 ORTHO05D006855 7.6e-119 431.0 314 68.5
HanXRQChr04g0110691 Helianthus annuus HOM05D005470 ORTHO05D006855 1.0e-118 430.6 304 69.1
Sc17g0002580 Simmondsia chinensis HOM05D005470 ORTHO05D006855 1.7e-118 429.9 305 70.2
BraA06t26801Z Brassica rapa HOM05D005470 ORTHO05D006855 2.2e-118 429.5 312 68.9
MELO3C026704.2 Cucumis melo HOM05D005470 ORTHO05D006855 2.2e-118 429.5 300 68.7
Migut.I00044 Erythranthe guttata HOM05D005470 ORTHO05D006855 2.2e-118 429.5 307 68.4
AT5G48840 Arabidopsis thaliana HOM05D005470 ORTHO05D006855 3.8e-118 428.7 311 67.2
GSVIVG01028578001 Vitis vinifera HOM05D005470 ORTHO05D006855 8.4e-118 427.6 299 69.9
Aqoxy2G03764 Aquilegia oxysepala HOM05D005470 ORTHO05D006855 2.5e-117 426.0 319 68.0
Sp2g19240 Schrenkiella parvula HOM05D005470 ORTHO05D006855 4.2e-117 425.2 308 69.2
BolC7t44465H Brassica oleracea HOM05D005470 ORTHO05D006855 5.5e-117 424.9 312 68.6
CsaV3_6G036910 Cucumis sativus L. HOM05D005470 ORTHO05D006855 5.5e-117 424.9 300 67.7
C07p39460 Brassica napus HOM05D005470 ORTHO05D006855 1.6e-116 423.3 313 67.7
SGA_v2.0_scaffold8G04652 Striga asiatica HOM05D005470 ORTHO05D006855 1.6e-116 423.3 305 69.8
AL8G22020 Arabidopsis lyrata HOM05D005470 ORTHO05D006855 2.1e-116 422.9 311 66.6
BcaC06g30753 Brassica carinata HOM05D005470 ORTHO05D006855 2.3e-115 419.5 314 67.8
Thhalv10004618m.g Eutrema salsugineum HOM05D005470 ORTHO05D006855 2.3e-115 419.5 312 67.0
Carub.0008s0857 Capsella rubella HOM05D005470 ORTHO05D006855 3.0e-115 419.1 310 65.5
CAN.G1273.33 Capsicum annuum HOM05D005470 ORTHO05D006855 1.1e-114 417.2 311 65.6
Lsat_1_v5_gn_8_90101 Lactuca sativa HOM05D005470 ORTHO05D006855 7.4e-114 414.5 319 66.5
Ah.08g214020 Amaranthus hybridus HOM05D005470 ORTHO05D006855 3.1e-112 409.1 337 61.4
CDE01G0096 Ceratophyllum demersum HOM05D005470 ORTHO05D006855 2.6e-111 406.0 335 61.5
Ciclev10021316m.g Citrus clementina HOM05D005470 ORTHO05D006855 7.7e-111 404.4 305 66.9
CARHR182880 Cardamine hirsuta HOM05D005470 ORTHO05D006855 2.2e-110 402.9 311 64.0
Cfa002558 Carpinus fangiana HOM05D005470 ORTHO05D006855 6.5e-110 401.4 318 63.2
Peaxi162Scf00107g01116 Petunia axillaris HOM05D005470 ORTHO05D006855 1.2e-108 397.1 313 63.9
Os03g0851800 Oryza sativa ssp. japonica HOM05D005470 ORTHO05D006855 1.4e-107 393.7 307 63.2
Prupe.8G204600 Prunus persica HOM05D005470 ORTHO05D006855 6.3e-105 384.8 280 66.8
HPP92_021568 Vanilla planifolia HOM05D005470 ORTHO05D006855 4.1e-104 382.1 311 62.1
Zm00001eb064670 Zea mays HOM05D005470 ORTHO05D006855 8.5e-102 374.4 308 62.0
A06p38870 Brassica napus HOM05D006020 ORTHO05D007665 1.4e-101 373.6 291 65.6
ATR0736G181 Amborella trichopoda HOM05D005470 ORTHO05D006855 3.2e-101 372.5 332 56.6
MBI07_g00286_MAGBIO Magnolia biondii HOM05D004483 ORTHO05D005609 1.0e-99 367.5 377 53.1
BcaC06g30729 Brassica carinata HOM05D005470 ORTHO05D006855 3.0e-99 365.9 268 68.7
SEGI_32261 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 7.4e-98 361.3 303 60.1
SMO144G0038 Selaginella moellendorffii HOM05D005470 ORTHO05D006855 1.1e-93 347.4 298 57.0
SHI28627 Sapria himalayana HOM05D005470 ORTHO05D006855 1.2e-92 344.0 295 60.7
Mapoly0006s0023 Marchantia polymorpha HOM05D005470 ORTHO05D006855 1.0e-91 340.9 302 56.3
Pp3c24_12730 Physcomitrium patens HOM05D005470 ORTHO05D006855 1.4e-91 340.5 298 55.7
Hma1.2p1_1061F.1_g253390 Hydrangea macrophylla HOM05D005470 ORTHO05D006855 2.3e-91 339.7 229 73.4
SMO351G0371 Selaginella moellendorffii HOM05D005470 ORTHO05D006855 3.0e-91 339.3 302 56.6
AUR62008875 Chenopodium quinoa HOM05D005470 ORTHO05D006855 1.2e-87 327.4 272 61.4
TAR365G0091 Trochodendron aralioides HOM05D005470 ORTHO05D006855 2.9e-86 322.8 225 69.8
ECA236G4489 Erigeron canadensis HOM05D005470 ORTHO05D006855 2.3e-83 313.2 231 68.8
CBR_g41676 Chara braunii HOM05D005470 ORTHO05D006855 1.8e-80 303.5 357 47.3
SEGI_26814 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 3.0e-75 286.2 231 62.8
CANSAT01G1736 Cannabis sativa HOM05D005470 ORTHO05D006855 1.2e-71 274.2 175 74.9
MCO10G244 Micromonas commoda HOM05D005470 ORTHO05D006855 3.5e-71 272.7 339 46.0
vmacro15783 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 1.1e-69 267.7 201 66.2
Nn1g07785 Nelumbo nucifera HOM05D005470 ORTHO05D006855 5.2e-67 258.8 192 65.1
Atru.chr5.2014 Acer truncatum HOM05D005470 ORTHO05D006855 2.8e-60 236.5 183 63.4
Glyma.08G355700 Glycine max HOM05D005470 ORTHO05D006855 6.6e-54 215.3 305 48.5
vmacro15781 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 2.1e-52 210.3 227 52.9
Cre02.g090150 Chlamydomonas reinhardtii HOM05D005470 ORTHO05D006855 1.8e-51 207.2 208 52.9
vmacro23327 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 2.3e-46 190.3 188 56.9
HanXRQChr16g0514371 Helianthus annuus HOM05D005470 ORTHO05D006855 8.6e-46 188.3 149 61.1
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 2.5e-45 186.8 281 39.9
TAR636G1319 Trochodendron aralioides HOM05D005470 ORTHO05D006855 1.0e-38 164.9 156 54.5
unitig_92.g28106 Utricularia gibba HOM05D005470 ORTHO05D006855 1.0e-38 164.9 108 71.3
arahy.Tifrunner.gnm1.ann1.K5YBAW Arachis hypogaea HOM05D005470 ORTHO05D006855 1.3e-38 164.5 127 70.1
Cfa025604 Carpinus fangiana HOM05D005470 ORTHO05D006855 3.0e-38 163.3 299 36.1
unitig_92.g28105 Utricularia gibba HOM05D005470 ORTHO05D006855 4.9e-33 146.0 124 59.7
arahy.Tifrunner.gnm1.ann1.M1HUIQ Arachis hypogaea HOM05D005470 ORTHO05D006855 1.0e-30 138.3 126 62.7
arahy.Tifrunner.gnm1.ann1.GL96XS Arachis hypogaea HOM05D005470 ORTHO05D006855 1.9e-24 117.5 89 66.3
MD05G1177900 Malus domestica HOM05D005470 ORTHO05D006855 9.3e-24 115.2 164 45.1
Nn1g07786 Nelumbo nucifera HOM05D005470 ORTHO05D006855 8.7e-22 108.6 82 61.0
COL.COLO4_06654 Corchorus olitorius HOM05D005470 ORTHO05D006855 1.9e-21 107.5 68 72.1
arahy.Tifrunner.gnm1.ann1.HRPB72 Arachis hypogaea HOM05D005470 ORTHO05D006855 1.3e-20 104.8 83 65.1
FAN15G3610 Fragaria x ananassa HOM05D005470 ORTHO05D006855 2.8e-20 103.6 79 59.5
SEGI_11949 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 4.5e-18 96.3 144 38.9
Atru.chr5.2015 Acer truncatum HOM05D005470 ORTHO05D006855 1.1e-16 91.7 81 64.2
CsaV3_1G001100 Cucumis sativus L. HOM05D005470 ORTHO05D006855 1.4e-16 91.3 62 77.4
CSS0038259 Camellia sinensis var. sinensis HOM05D005470 ORTHO05D006855 5.5e-16 89.4 87 51.7
CAN.G122.7 Capsicum annuum HOM05D005470 ORTHO05D006855 1.6e-15 87.8 107 43.9
MD05G1178000 Malus domestica HOM05D005470 ORTHO05D006855 6.0e-15 85.9 68 61.8
CANSAT54G2179 Cannabis sativa HOM05D005470 ORTHO05D006855 2.3e-14 84.0 117 46.2
MELO3C014350.2 Cucumis melo HOM05D005470 ORTHO05D006855 3.9e-14 83.2 60 63.3
arahy.Tifrunner.gnm1.ann1.6Q4MDY Arachis hypogaea HOM05D005470 ORTHO05D038880 2.9e-09 67.0 50 66.0


User provided reference genes

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