Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G170600 Glycine max HOM05D006279 ORTHO05D008055 8.2e-52 207.2 107 100.0
Glyma.08G354200 Glycine max HOM05D006279 ORTHO05D008055 1.7e-44 183.0 107 88.8
Phvul.008G125700 Phaseolus vulgaris HOM05D006279 ORTHO05D008055 7.7e-42 174.1 107 83.2
VMungo1383G1366 Vigna mungo HOM05D006279 ORTHO05D008055 1.7e-41 172.9 107 82.2
Lj1g0019467 Lotus japonicus HOM05D006279 ORTHO05D008055 9.2e-35 150.6 107 73.8
Ca_13203_v3 Cicer arietinum L. HOM05D006279 ORTHO05D008055 1.2e-34 150.2 109 72.5
Lalb_Chr01g0022321 Lupinus albus HOM05D006279 ORTHO05D008055 3.8e-33 145.2 110 71.8
TPR.G17035 Trifolium pratense HOM05D006279 ORTHO05D008055 8.6e-33 144.1 110 70.0
arahy.Tifrunner.gnm1.ann1.96G0FW Arachis hypogaea HOM05D006279 ORTHO05D008055 9.5e-32 140.6 108 70.4
arahy.Tifrunner.gnm1.ann1.YQI87S Arachis hypogaea HOM05D006279 ORTHO05D008055 1.6e-31 139.8 108 69.4
Psat6g191840 Pisum sativum HOM05D006279 ORTHO05D008055 6.8e-30 134.4 110 66.4
arahy.Tifrunner.gnm1.ann1.BRZ89T Arachis hypogaea HOM05D006279 ORTHO05D008055 7.5e-29 131.0 109 64.2
Psat4g003200 Pisum sativum HOM05D006279 ORTHO05D008055 6.4e-28 127.9 109 65.1
Atru.chr1.2785 Acer truncatum HOM05D006279 ORTHO05D008055 5.4e-27 124.8 91 71.4
QL10p041722 Quercus lobata HOM05D006279 ORTHO05D008055 5.4e-27 124.8 91 69.2
Eucgr.I00130 Eucalyptus grandis HOM05D006279 ORTHO05D008055 1.6e-26 123.2 90 67.8
Cpa.g.sc2692.1 Carica papaya HOM05D006279 ORTHO05D008055 3.5e-26 122.1 93 68.8
Cfa011174 Carpinus fangiana HOM05D006279 ORTHO05D008055 3.5e-26 122.1 88 71.6
Haze_02661 Corylus avellana HOM05D006279 ORTHO05D008055 6.0e-26 121.3 88 71.6
Manes.01G181300 Manihot esculenta HOM05D006279 ORTHO05D008055 6.0e-26 121.3 87 66.7
Medtr1g098510 Medicago truncatula HOM05D006279 ORTHO05D008055 6.0e-26 121.3 116 62.1
Haze_02674 Corylus avellana HOM05D006279 ORTHO05D008055 7.8e-26 120.9 88 71.6
Hma1.2p1_0847F.1_g227850 Hydrangea macrophylla HOM05D006279 ORTHO05D008055 2.3e-25 119.4 89 67.4
Potri.005G066900 Populus trichocarpa HOM05D006279 ORTHO05D008055 2.3e-25 119.4 93 66.7
Sabra05G0055000 Salix brachista HOM05D006279 ORTHO05D008055 2.3e-25 119.4 93 66.7
Potri.007G102600 Populus trichocarpa HOM05D006279 ORTHO05D008055 3.9e-25 118.6 91 65.9
RcHm_v2.0_Chr2g0163441 Rosa chinensis HOM05D006279 ORTHO05D008055 3.9e-25 118.6 90 64.4
Dinv44192 Davidia involucrata HOM05D006279 ORTHO05D008055 6.6e-25 117.9 89 66.3
Sabra07G0084300 Salix brachista HOM05D006279 ORTHO05D008055 8.6e-25 117.5 91 65.9
Sc09g0002260 Simmondsia chinensis HOM05D006279 ORTHO05D008055 1.1e-24 117.1 91 62.6
TAR623G0329 Trochodendron aralioides HOM05D006279 ORTHO05D008055 1.1e-24 117.1 89 62.9
FAN09G2945 Fragaria x ananassa HOM05D006279 ORTHO05D008055 1.9e-24 116.3 87 67.8
MD09G1082400 Malus domestica HOM05D006279 ORTHO05D008055 1.9e-24 116.3 94 64.9
FAN05G3461 Fragaria x ananassa HOM05D006279 ORTHO05D008055 2.5e-24 115.9 87 67.8
MD10G1003300 Malus domestica HOM05D006279 ORTHO05D008055 3.3e-24 115.5 94 64.9
FvH4_6g45500 Fragaria vesca HOM05D006279 ORTHO05D008055 4.3e-24 115.2 84 70.2
FAN14G0828 Fragaria x ananassa HOM05D006279 ORTHO05D008055 4.3e-24 115.2 84 70.2
Ciclev10003637m.g Citrus clementina HOM05D006279 ORTHO05D008055 5.6e-24 114.8 86 68.6
CSS0005410 Camellia sinensis var. sinensis HOM05D006279 ORTHO05D008055 9.5e-24 114.0 88 67.0
Nn2g15145 Nelumbo nucifera HOM05D006279 ORTHO05D008055 9.5e-24 114.0 88 64.8
Oeu006489.1 Olea europaea HOM05D006279 ORTHO05D008055 1.6e-23 113.2 107 56.1
CiPaw.14G026200 Carya illinoinensis HOM05D006279 ORTHO05D008055 2.1e-23 112.8 90 65.6
CSS0021017 Camellia sinensis var. sinensis HOM05D006279 ORTHO05D008055 2.8e-23 112.5 90 64.4
Migut.B01200 Erythranthe guttata HOM05D006279 ORTHO05D008055 4.7e-23 111.7 88 65.9
PGSC0003DMG400022672 Solanum tuberosum HOM05D006279 ORTHO05D008055 4.7e-23 111.7 96 58.3
Cc09_g10080 Coffea canephora HOM05D006279 ORTHO05D008055 6.2e-23 111.3 92 64.1
Aqoxy2G01154 Aquilegia oxysepala HOM05D006279 ORTHO05D008055 8.0e-23 110.9 82 64.6
TWI79G1313 Tripterygium wilfordii HOM05D006279 ORTHO05D008055 1.1e-22 110.5 90 63.3
Eucgr.L03476 Eucalyptus grandis HOM05D006279 ORTHO05D008055 1.4e-22 110.2 74 70.3
Peaxi162Scf00386g00058 Petunia axillaris HOM05D006279 ORTHO05D008055 1.8e-22 109.8 92 62.0
Prupe.3G241300 Prunus persica HOM05D006279 ORTHO05D008055 1.8e-22 109.8 85 64.7
TAR369G0312 Trochodendron aralioides HOM05D006279 ORTHO05D008055 1.8e-22 109.8 91 57.1
ClCG02G000360 Citrullus lanatus HOM05D006279 ORTHO05D008055 2.3e-22 109.4 84 64.3
MBI06_g37673_MAGBIO Magnolia biondii HOM05D006279 ORTHO05D008055 2.3e-22 109.4 80 65.0
MBI06_g46723_MAGBIO Magnolia biondii HOM05D006279 ORTHO05D008055 2.3e-22 109.4 80 65.0
Ah.06g190980 Amaranthus hybridus HOM05D006279 ORTHO05D008055 4.0e-22 108.6 97 56.7
vmacro13565 Vaccinium macrocarpon HOM05D006279 ORTHO05D008055 5.2e-22 108.2 83 61.4
Actinidia20026 Actinidia chinensis HOM05D006279 ORTHO05D008055 6.8e-22 107.8 85 62.4
THA.LOC104818424 Tarenaya hassleriana HOM05D006279 ORTHO05D008055 8.9e-22 107.5 87 63.2
Thecc.08G189700 Theobroma cacao HOM05D006279 ORTHO05D008055 8.9e-22 107.5 87 58.6
vmacro12040 Vaccinium macrocarpon HOM05D006279 ORTHO05D008055 8.9e-22 107.5 83 60.2
CANSAT64G0511 Cannabis sativa HOM05D006279 ORTHO05D008055 1.2e-21 107.1 83 67.5
Actinidia30262 Actinidia chinensis HOM05D006279 ORTHO05D008055 1.5e-21 106.7 86 60.5
PGSC0003DMG400030782 Solanum tuberosum HOM05D006279 ORTHO05D008055 1.5e-21 106.7 98 57.1
Peaxi162Scf00033g00134 Petunia axillaris HOM05D006279 ORTHO05D008055 2.6e-21 105.9 95 57.9
CANSAT78G0480 Cannabis sativa HOM05D006279 ORTHO05D008055 3.4e-21 105.5 83 67.5
COL.COLO4_11288 Corchorus olitorius HOM05D006279 ORTHO05D008055 3.4e-21 105.5 82 63.4
CAN.G1592.9 Capsicum annuum HOM05D006279 ORTHO05D008055 5.8e-21 104.8 106 57.5
Gohir.D05G287900 Gossypium hirsutum HOM05D006279 ORTHO05D008055 5.8e-21 104.8 83 59.0
Gorai.009G302900 Gossypium raimondii HOM05D006279 ORTHO05D008055 5.8e-21 104.8 83 59.0
Nitab4.5_0001688g0060 Nicotiana tabacum HOM05D006279 ORTHO05D008055 7.5e-21 104.4 67 73.1
PGR119G2211 Punica granatum HOM05D006279 ORTHO05D008055 7.5e-21 104.4 79 60.8
CARHR204140 Cardamine hirsuta HOM05D006279 ORTHO05D008055 9.8e-21 104.0 88 60.2
Eucgr.I00134 Eucalyptus grandis HOM05D006279 ORTHO05D008055 9.8e-21 104.0 73 67.1
Solyc06g054590.3 Solanum lycopersicum HOM05D006279 ORTHO05D008055 9.8e-21 104.0 98 55.1
Sopen06g019660 Solanum pennellii HOM05D006279 ORTHO05D008055 9.8e-21 104.0 98 55.1
Duzib177G0075 Durio zibethinus HOM05D006279 ORTHO05D008055 1.3e-20 103.6 100 58.0
Nitab4.5_0000829g0220 Nicotiana tabacum HOM05D006279 ORTHO05D008055 1.7e-20 103.2 96 57.3
Gohir.A05G286900 Gossypium hirsutum HOM05D006279 ORTHO05D008055 2.2e-20 102.8 96 57.3
Carub.0006s0782 Capsella rubella HOM05D006279 ORTHO05D008055 2.9e-20 102.4 81 60.5
Nitab4.5_0000644g0080 Nicotiana tabacum HOM05D006279 ORTHO05D008055 2.9e-20 102.4 98 54.1
SHI36067 Sapria himalayana HOM05D006279 ORTHO05D008055 2.9e-20 102.4 85 60.0
EL10Ac4g09617 Beta vulgaris HOM05D006279 ORTHO05D008055 3.7e-20 102.1 83 55.4
AUR62006855 Chenopodium quinoa HOM05D006279 ORTHO05D008055 3.7e-20 102.1 90 57.8
CsaV3_2G019480 Cucumis sativus L. HOM05D006279 ORTHO05D008055 3.7e-20 102.1 84 60.7
Nitab4.5_0010800g0010 Nicotiana tabacum HOM05D006279 ORTHO05D008055 3.7e-20 102.1 96 56.2
Eucgr.I00143 Eucalyptus grandis HOM05D006279 ORTHO05D008055 6.4e-20 101.3 88 58.0
AT5G09270 Arabidopsis thaliana HOM05D006279 ORTHO05D008055 8.3e-20 100.9 81 58.0
AUR62000510 Chenopodium quinoa HOM05D006279 ORTHO05D008055 8.3e-20 100.9 83 56.6
BraA10t44844Z Brassica rapa HOM05D006279 ORTHO05D008055 1.1e-19 100.5 84 56.0
A10p27950 Brassica napus HOM05D004285 ORTHO05D005176 1.4e-19 100.1 86 57.0
DCAR_026025 Daucus carota HOM05D006279 ORTHO05D008055 1.4e-19 100.1 98 54.1
Thhalv10015068m.g Eutrema salsugineum HOM05D006279 ORTHO05D008055 1.9e-19 99.8 81 58.0
AL6G19660 Arabidopsis lyrata HOM05D006279 ORTHO05D008055 2.4e-19 99.4 81 58.0
BcaB05g21561 Brassica carinata HOM05D006279 ORTHO05D008055 3.2e-19 99.0 81 56.8
BolC2t06340H Brassica oleracea HOM05D006279 ORTHO05D008055 3.2e-19 99.0 81 56.8
MELO3C023226.2 Cucumis melo HOM05D006279 ORTHO05D008055 3.2e-19 99.0 73 63.0
Sed0009157 Sechium edule HOM05D006279 ORTHO05D008055 4.1e-19 98.6 85 58.8
BraA02t04974Z Brassica rapa HOM05D006279 ORTHO05D008055 5.4e-19 98.2 88 54.5
MSTRG.20541 Avicennia marina HOM05D006279 ORTHO05D008055 7.0e-19 97.8 109 49.5
BcaB08g37221 Brassica carinata HOM05D006279 ORTHO05D008055 7.0e-19 97.8 83 55.4
Sp6g34040 Schrenkiella parvula HOM05D006279 ORTHO05D008055 7.0e-19 97.8 81 56.8
C09p68090 Brassica napus HOM05D004285 ORTHO05D005176 1.2e-18 97.1 102 49.0
C09p68110 Brassica napus HOM05D006279 ORTHO05D008055 1.2e-18 97.1 102 49.0
C09p68150 Brassica napus HOM05D006279 ORTHO05D008055 1.2e-18 97.1 102 49.0
BolC9t59565H Brassica oleracea HOM05D004285 ORTHO05D005176 1.2e-18 97.1 102 49.0
CAN.G256.17 Capsicum annuum HOM05D006279 ORTHO05D008055 1.6e-18 96.7 96 53.1
BcaC03g13247 Brassica carinata HOM05D006279 ORTHO05D008055 2.1e-18 96.3 88 52.3
C02p03790 Brassica napus HOM05D006279 ORTHO05D008055 2.1e-18 96.3 88 52.3
C09p68050 Brassica napus HOM05D006279 ORTHO05D008055 2.1e-18 96.3 84 54.8
HPP92_013811 Vanilla planifolia HOM05D006279 ORTHO05D008055 2.1e-18 96.3 81 51.9
ATR0824G232 Amborella trichopoda HOM05D006279 ORTHO05D008055 2.7e-18 95.9 78 61.5
arahy.Tifrunner.gnm1.ann1.BUL9CE Arachis hypogaea HOM05D006279 ORTHO05D008055 4.6e-18 95.1 63 71.4
COL.COLO4_13057 Corchorus olitorius HOM05D006279 ORTHO05D008055 4.6e-18 95.1 85 52.9
Atru.chr9.833 Acer truncatum HOM05D000003 ORTHO05D000126 7.8e-18 94.4 67 67.2
Rhsim10G0172600 Rhododendron simsii HOM05D006279 ORTHO05D008055 1.0e-17 94.0 72 63.9
GSVIVG01023542001 Vitis vinifera HOM05D006279 ORTHO05D008055 1.7e-17 93.2 92 55.4
Lsat_1_v5_gn_5_86080 Lactuca sativa HOM05D006279 ORTHO05D008055 2.3e-17 92.8 87 54.0
Aa31LG3G17730 Aethionema arabicum HOM05D006279 ORTHO05D008055 3.9e-17 92.0 82 58.5
HanXRQChr10g0308251 Helianthus annuus HOM05D006279 ORTHO05D008055 1.5e-16 90.1 100 45.0
Os01g0861000 Oryza sativa ssp. japonica HOM05D006279 ORTHO05D008055 3.1e-14 82.4 70 60.0
COL.COLO4_36340 Corchorus olitorius HOM05D006279 ORTHO05D008055 4.4e-13 78.6 59 57.6
SEGI_20234 Sequoiadendron giganteum HOM05D006279 ORTHO05D008055 2.2e-12 76.3 68 51.5
Pp3c8_7150 Physcomitrium patens HOM05D006279 ORTHO05D008055 2.1e-10 69.7 71 45.1
Ca_10674_v3 Cicer arietinum L. HOM05D006279 ORTHO05D008055 7.8e-10 67.8 109 46.8
Mapoly0027s0076 Marchantia polymorpha HOM05D006279 ORTHO05D008055 1.0e-09 67.4 85 41.2
Sopen01g029410 Solanum pennellii HOM05D006279 ORTHO05D008055 1.0e-09 67.4 66 45.5
Hma1.2p1_4173F.1_g338420 Hydrangea macrophylla HOM05D006279 ORTHO05D008055 2.4e-06 56.2 40 70.0
Oeu062074.1 Olea europaea HOM05D013196 ORTHO05D010523 8.9e-06 54.3 43 62.8


User provided reference genes

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