Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G167400 Glycine max HOM05D005604 ORTHO05D006745 1.3e-307 1058.9 551 100.0
Glyma.08G349100 Glycine max HOM05D005604 ORTHO05D006745 3.5e-284 981.1 555 91.9
VMungo1383G0872 Vigna mungo HOM05D005604 ORTHO05D006745 3.2e-277 958.0 551 90.4
Phvul.008G130900 Phaseolus vulgaris HOM05D005604 ORTHO05D006745 2.4e-261 905.2 540 88.1
Lj1g0022594 Lotus japonicus HOM05D005604 ORTHO05D006745 4.8e-233 811.2 533 82.0
Psat3g148680 Pisum sativum HOM05D005604 ORTHO05D006745 4.8e-233 811.2 558 78.1
Medtr7g056243 Medicago truncatula HOM05D005604 ORTHO05D006745 3.1e-224 781.9 534 77.9
arahy.Tifrunner.gnm1.ann1.6511ZK Arachis hypogaea HOM05D005604 ORTHO05D006745 4.5e-223 778.1 552 76.6
arahy.Tifrunner.gnm1.ann1.S4VI32 Arachis hypogaea HOM05D005604 ORTHO05D006745 1.7e-222 776.2 552 76.4
Prupe.8G199200 Prunus persica HOM05D005604 ORTHO05D006745 1.6e-215 753.1 558 74.0
Lalb_Chr13g0291101 Lupinus albus HOM05D005604 ORTHO05D006745 9.8e-210 733.8 562 72.8
MD10G1160100 Malus domestica HOM05D005604 ORTHO05D006745 4.8e-209 731.5 558 72.4
Potri.002G245700 Populus trichocarpa HOM05D005604 ORTHO05D006745 3.1e-208 728.8 554 72.9
MD05G1171800 Malus domestica HOM05D005604 ORTHO05D006745 1.2e-207 726.9 558 72.0
Duzib138G1747 Durio zibethinus HOM05D005604 ORTHO05D006745 2.7e-207 725.7 560 72.7
COL.COLO4_15621 Corchorus olitorius HOM05D005604 ORTHO05D006745 3.5e-207 725.3 555 72.6
QL09p051278 Quercus lobata HOM05D005604 ORTHO05D006745 5.9e-207 724.5 552 71.2
Thecc.01G220400 Theobroma cacao HOM05D005604 ORTHO05D006745 5.0e-206 721.5 559 72.6
FvH4_2g18560 Fragaria vesca HOM05D005604 ORTHO05D006745 6.5e-206 721.1 562 72.2
FAN15G1583 Fragaria x ananassa HOM05D005604 ORTHO05D006745 2.5e-205 719.2 562 72.6
FAN27G1924 Fragaria x ananassa HOM05D005604 ORTHO05D006745 2.5e-205 719.2 562 70.5
RcHm_v2.0_Chr6g0284121 Rosa chinensis HOM05D005604 ORTHO05D006745 3.2e-205 718.8 562 72.8
FAN24G1841 Fragaria x ananassa HOM05D005604 ORTHO05D006745 5.5e-205 718.0 562 71.2
Gorai.001G231700 Gossypium raimondii HOM05D005604 ORTHO05D006745 2.1e-204 716.1 558 71.7
Dinv12653 Davidia involucrata HOM05D005604 ORTHO05D006745 6.1e-204 714.5 555 72.8
Gohir.D07G205700 Gossypium hirsutum HOM05D005604 ORTHO05D006745 8.0e-204 714.1 558 71.5
Gohir.A07G199300 Gossypium hirsutum HOM05D005604 ORTHO05D006745 1.0e-203 713.8 557 71.5
CiPaw.02G023400 Carya illinoinensis HOM05D005604 ORTHO05D006745 8.8e-203 710.7 553 71.6
Duzib133G0023 Durio zibethinus HOM05D005604 ORTHO05D006745 1.5e-202 709.9 558 71.9
Dinv19175 Davidia involucrata HOM05D005604 ORTHO05D006745 2.0e-202 709.5 555 72.8
Atru.chr6.1423 Acer truncatum HOM05D005604 ORTHO05D006745 1.3e-201 706.8 568 71.7
CiPaw.01G050300 Carya illinoinensis HOM05D005604 ORTHO05D006745 2.2e-201 706.1 559 69.2
CSS0000075 Camellia sinensis var. sinensis HOM05D005604 ORTHO05D006745 7.7e-199 697.6 556 70.9
CANSAT01G1141 Cannabis sativa HOM05D005604 ORTHO05D006745 7.7e-199 697.6 564 70.4
GSVIVG01003930001 Vitis vinifera HOM05D005604 ORTHO05D006745 5.0e-198 694.9 558 69.9
Cpa.g.sc43.114 Carica papaya HOM05D005604 ORTHO05D006745 2.8e-196 689.1 550 70.5
Ciclev10019544m.g Citrus clementina HOM05D005604 ORTHO05D006745 5.2e-195 684.9 561 70.1
Eucgr.K02139 Eucalyptus grandis HOM05D005604 ORTHO05D006745 4.4e-194 681.8 556 69.1
Hma1.2p1_0226F.1_g095420 Hydrangea macrophylla HOM05D005604 ORTHO05D006745 2.4e-192 676.0 550 67.5
Actinidia39432 Actinidia chinensis HOM05D005604 ORTHO05D006745 3.2e-192 675.6 558 67.6
TWI36G0921 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 4.3e-189 665.2 566 67.7
MSTRG.18511 Avicennia marina HOM05D005604 ORTHO05D006745 4.7e-188 661.8 552 65.9
Actinidia30055 Actinidia chinensis HOM05D005604 ORTHO05D006745 5.2e-187 658.3 519 70.5
TWI18G0325 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 1.2e-186 657.1 561 67.9
Rhsim13G0047500 Rhododendron simsii HOM05D005604 ORTHO05D006745 1.5e-186 656.8 560 67.3
Haze_15255 Corylus avellana HOM05D005604 ORTHO05D006745 3.0e-182 642.5 649 60.6
TAR362G0631 Trochodendron aralioides HOM05D005604 ORTHO05D006745 8.6e-182 641.0 566 64.1
ClCG09G008600 Citrullus lanatus HOM05D005604 ORTHO05D006745 7.3e-181 637.9 558 66.8
PGSC0003DMG400027951 Solanum tuberosum HOM05D005604 ORTHO05D006745 9.5e-181 637.5 554 66.1
Solyc09g059470.4 Solanum lycopersicum HOM05D005604 ORTHO05D006745 2.8e-180 636.0 555 65.8
Migut.D00766 Erythranthe guttata HOM05D005604 ORTHO05D006745 4.7e-180 635.2 551 66.4
Sed0019682 Sechium edule HOM05D005604 ORTHO05D006745 4.7e-180 635.2 557 66.6
Nitab4.5_0009005g0020 Nicotiana tabacum HOM05D005604 ORTHO05D006745 1.8e-179 633.3 553 64.6
vmacro02782 Vaccinium macrocarpon HOM05D005604 ORTHO05D006745 1.8e-179 633.3 607 60.5
CsaV3_7G026370 Cucumis sativus L. HOM05D005604 ORTHO05D006745 8.9e-179 630.9 558 66.1
Sopen09g022640 Solanum pennellii HOM05D005604 ORTHO05D006745 4.4e-178 628.6 555 65.0
TAR633G2144 Trochodendron aralioides HOM05D005604 ORTHO05D006745 5.8e-178 628.2 561 64.5
Sopen06g034740 Solanum pennellii HOM05D005604 ORTHO05D006745 4.9e-177 625.2 551 62.8
PGSC0003DMG400020164 Solanum tuberosum HOM05D005604 ORTHO05D006745 1.1e-176 624.0 551 63.3
MELO3C021083.2 Cucumis melo HOM05D005604 ORTHO05D006745 1.6e-175 620.2 558 65.2
Solyc06g083370.3 Solanum lycopersicum HOM05D005604 ORTHO05D006745 1.7e-174 616.7 551 62.1
CAN.G874.4 Capsicum annuum HOM05D005604 ORTHO05D006745 3.9e-174 615.5 552 62.3
Nitab4.5_0003020g0080 Nicotiana tabacum HOM05D005604 ORTHO05D006745 6.2e-172 608.2 572 61.2
PSO063G0087 Papaver somniferum HOM05D005604 ORTHO05D006745 1.1e-171 607.4 562 62.1
PGR044G1204 Punica granatum HOM05D005604 ORTHO05D006745 1.8e-171 606.7 572 64.3
Lj1A89T69 Lonicera japonica HOM05D005604 ORTHO05D006745 2.3e-171 606.3 611 60.4
PSO017G3308 Papaver somniferum HOM05D005604 ORTHO05D006745 2.3e-171 606.3 563 62.3
Sabra02G0187000 Salix brachista HOM05D005604 ORTHO05D006745 4.0e-171 605.5 468 72.4
AUR62001131 Chenopodium quinoa HOM05D005604 ORTHO05D006745 2.0e-170 603.2 577 62.0
DCAR_004740 Daucus carota HOM05D005604 ORTHO05D006745 2.6e-170 602.8 558 61.1
MBI07_g18990_MAGBIO Magnolia biondii HOM05D005604 ORTHO05D006745 2.6e-170 602.8 559 61.9
Ah.15g093490 Amaranthus hybridus HOM05D005604 ORTHO05D006745 1.3e-169 600.5 584 60.3
AUR62016550 Chenopodium quinoa HOM05D005604 ORTHO05D006745 5.4e-168 595.1 577 61.2
THA.LOC104822492 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 3.5e-167 592.4 566 62.9
HanXRQChr04g0108051 Helianthus annuus HOM05D005604 ORTHO05D006745 6.6e-166 588.2 554 61.9
DCAR_012669 Daucus carota HOM05D005604 ORTHO05D006745 1.5e-165 587.0 559 60.5
Aa31LG5G17790 Aethionema arabicum HOM05D005604 ORTHO05D006745 9.6e-165 584.3 559 62.4
Cc01_g16720 Coffea canephora HOM05D005604 ORTHO05D006745 6.4e-161 571.6 554 61.0
Aqoxy2G03983 Aquilegia oxysepala HOM05D005604 ORTHO05D006745 1.4e-160 570.5 566 60.2
THA.LOC104802659 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 1.9e-160 570.1 575 62.3
CARHR081860 Cardamine hirsuta HOM05D005604 ORTHO05D006745 2.1e-159 566.6 570 61.2
Carub.0003s0673 Capsella rubella HOM05D005604 ORTHO05D006745 1.3e-158 563.9 565 61.6
AT3G07210 Arabidopsis thaliana HOM05D005604 ORTHO05D006745 3.9e-158 562.4 566 61.7
BcaC05g29746 Brassica carinata HOM05D005604 ORTHO05D006745 1.5e-157 560.5 566 59.4
Thhalv10020454m.g Eutrema salsugineum HOM05D005604 ORTHO05D006745 1.9e-157 560.1 570 59.1
ECA236G4946 Erigeron canadensis HOM05D005604 ORTHO05D006745 5.6e-157 558.5 514 62.8
EL10Ac7g17895 Beta vulgaris HOM05D005604 ORTHO05D006745 1.3e-156 557.4 581 57.1
Nitab4.5_0003317g0030 Nicotiana tabacum HOM05D005604 ORTHO05D006745 1.3e-156 557.4 698 51.1
Manes.13G049200 Manihot esculenta HOM05D005604 ORTHO05D006745 6.2e-156 555.1 450 70.2
Nitab4.5_0000045g0530 Nicotiana tabacum HOM05D005604 ORTHO05D006745 6.2e-156 555.1 697 50.5
Sp3g06160 Schrenkiella parvula HOM05D005604 ORTHO05D006745 1.4e-155 553.9 567 59.4
AL3G18480 Arabidopsis lyrata HOM05D005604 ORTHO05D006745 1.7e-153 547.0 565 59.6
Lsat_1_v5_gn_9_15140 Lactuca sativa HOM05D005604 ORTHO05D006745 3.2e-152 542.7 560 59.1
Peaxi162Scf01312g00047 Petunia axillaris HOM05D005604 ORTHO05D006745 5.4e-152 542.0 468 64.1
Peaxi162Scf00068g02416 Petunia axillaris HOM05D005604 ORTHO05D006745 1.0e-150 537.7 638 53.0
Lsat_1_v5_gn_8_89380 Lactuca sativa HOM05D005604 ORTHO05D006745 8.1e-148 528.1 561 57.4
ECA247G0587 Erigeron canadensis HOM05D005604 ORTHO05D006745 2.4e-144 516.5 513 58.3
unitig_60.g25697 Utricularia gibba HOM05D005604 ORTHO05D006745 7.1e-144 515.0 554 54.2
unitig_0.g223 Utricularia gibba HOM05D005604 ORTHO05D006745 2.7e-143 513.1 557 58.0
C05p60150 Brassica napus HOM05D005604 ORTHO05D006745 6.0e-143 511.9 567 57.0
BolC5t34666H Brassica oleracea HOM05D005604 ORTHO05D006745 6.0e-143 511.9 567 57.0
BcaC05g29850 Brassica carinata HOM05D005604 ORTHO05D006745 3.0e-142 509.6 567 56.8
HanXRQChr10g0279511 Helianthus annuus HOM05D005604 ORTHO05D006745 1.1e-141 507.7 559 54.9
BraA05t22827Z Brassica rapa HOM05D005604 ORTHO05D006745 5.3e-139 498.8 571 55.0
A05p41000 Brassica napus HOM05D005604 ORTHO05D006745 4.5e-138 495.7 571 54.6
Zm00001eb143450 Zea mays HOM05D005604 ORTHO05D006745 3.7e-132 476.1 567 50.8
ATR0561G172 Amborella trichopoda HOM05D005604 ORTHO05D006745 2.1e-127 460.3 571 51.5
Nn1g07990 Nelumbo nucifera HOM05D005604 ORTHO05D006745 4.3e-125 452.6 435 63.0
HPP92_011784 Vanilla planifolia HOM05D005604 ORTHO05D006745 4.8e-124 449.1 573 50.6
DCAR_004736 Daucus carota HOM05D005604 ORTHO05D006745 2.4e-123 446.8 428 61.2
Os01g0917200 Oryza sativa ssp. japonica HOM05D005604 ORTHO05D006745 5.3e-123 445.7 522 52.5
Hund05575 Selenicereus undatus HOM05D005604 ORTHO05D006745 2.7e-119 433.3 584 47.4
Sc05g0001960 Simmondsia chinensis HOM05D005604 ORTHO05D006745 8.2e-116 421.8 389 61.7
CDE05G2031 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 2.0e-114 417.2 553 47.7
TPR.G6488 Trifolium pratense HOM05D005604 ORTHO05D006745 2.3e-110 403.7 299 75.9
Zm00001eb175070 Zea mays HOM05D005604 ORTHO05D006745 1.7e-92 344.4 563 41.9
SGA_v2.0_scaffold158G37516 Striga asiatica HOM05D005604 ORTHO05D006745 1.8e-91 340.9 297 63.3
Os08g0528800 Oryza sativa ssp. japonica HOM05D005604 ORTHO05D006745 1.4e-86 324.7 548 39.8
CDE05G1628 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 4.6e-74 283.1 359 47.9
CAN.G1432.2 Capsicum annuum HOM05D005604 ORTHO05D006745 1.2e-66 258.5 498 39.2
SEGI_00167 Sequoiadendron giganteum HOM05D005604 ORTHO05D006745 5.1e-49 199.9 491 34.0
DCAR_026186 Daucus carota HOM05D005604 ORTHO05D006745 1.1e-40 172.2 391 36.8
TPR.G6487 Trifolium pratense HOM05D005604 ORTHO05D006745 7.9e-34 149.4 91 82.4
ECA247G2712 Erigeron canadensis HOM05D005604 ORTHO05D006745 4.9e-28 130.2 154 56.5
Gohir.A05G304001 Gossypium hirsutum HOM05D005604 ORTHO05D006745 5.1e-25 120.2 120 58.3
Manes.12G047141 Manihot esculenta HOM05D005604 ORTHO05D006745 2.8e-23 114.4 85 68.2
Oeu057862.1 Olea europaea HOM05D005604 ORTHO05D006745 1.0e-20 105.9 86 64.0
SMO117G0236 Selaginella moellendorffii HOM05D005604 ORTHO05D006745 3.9e-17 94.0 199 29.1
AagrBONN_evm.TU.Sc2ySwM_117.906 Anthoceros agrestis HOM05D005604 ORTHO05D006745 1.9e-16 91.7 214 29.0
AagrBONN_evm.TU.Sc2ySwM_362.1199 Anthoceros agrestis HOM05D005604 ORTHO05D006745 2.5e-16 91.3 228 31.6
Mapoly0029s0037 Marchantia polymorpha HOM05D005604 ORTHO05D006745 4.8e-15 87.0 219 30.6
Hma1.2p1_1324F.1_g275630 Hydrangea macrophylla HOM05D005604 ORTHO05D006745 4.1e-14 84.0 78 60.3
AagrBONN_evm.TU.Sc2ySwM_368.1401 Anthoceros agrestis HOM05D005604 ORTHO05D006745 1.5e-13 82.0 196 28.6
QL09p051399 Quercus lobata HOM05D005604 ORTHO05D006745 5.5e-11 73.6 62 64.5
Medtr7g014365 Medicago truncatula HOM05D000103 ORTHO05D006745 3.1e-06 57.8 108 44.4


User provided reference genes

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