Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G156700 Glycine max HOM05D003579 ORTHO05D025634 7.5e-19 96.3 52 100.0
Glyma.07G107100 Glycine max HOM05D003579 ORTHO05D004266 5.7e-11 70.1 38 89.5
Lalb_Chr24g0398301 Lupinus albus HOM05D003579 ORTHO05D004266 7.5e-11 69.7 38 89.5
Atru.chr9.1578_Atru.chr9.1579 Acer truncatum HOM05D003579 ORTHO05D004266 1.3e-10 68.9 38 89.5
Glyma.09G170600 Glycine max HOM05D003579 ORTHO05D004266 1.3e-10 68.9 38 89.5
Lj5A164G66 Lonicera japonica HOM05D003579 ORTHO05D004266 1.3e-10 68.9 38 89.5
Phvul.004G146300 Phaseolus vulgaris HOM05D003579 ORTHO05D004266 1.3e-10 68.9 38 89.5
Potri.015G032500 Populus trichocarpa HOM05D003579 ORTHO05D004266 1.3e-10 68.9 38 89.5
TWI15G0294 Tripterygium wilfordii HOM05D003579 ORTHO05D004266 1.3e-10 68.9 38 86.8
VMungo0464G0093 Vigna mungo HOM05D003579 ORTHO05D004266 1.3e-10 68.9 38 89.5
AUR62038599 Chenopodium quinoa HOM05D003579 ORTHO05D004266 1.7e-10 68.6 39 84.6
Solyc06g072380.3 Solanum lycopersicum HOM05D003579 ORTHO05D004266 1.7e-10 68.6 38 86.8
Sopen06g028750 Solanum pennellii HOM05D003579 ORTHO05D004266 1.7e-10 68.6 38 86.8
PGSC0003DMG400026957 Solanum tuberosum HOM05D003579 ORTHO05D004266 1.7e-10 68.6 38 86.8
Dinv07799 Davidia involucrata HOM05D003579 ORTHO05D004266 2.2e-10 68.2 38 86.8
Sc10g0008960 Simmondsia chinensis HOM05D003579 ORTHO05D004266 2.2e-10 68.2 38 86.8
CSS0000253 Camellia sinensis var. sinensis HOM05D003579 ORTHO05D004266 2.8e-10 67.8 38 86.8
CANSAT56G2203 Cannabis sativa HOM05D003579 ORTHO05D004266 2.8e-10 67.8 38 86.8
CANSAT56G3429 Cannabis sativa HOM05D003579 ORTHO05D004266 2.8e-10 67.8 38 86.8
CiPaw.16G098300 Carya illinoinensis HOM05D003579 ORTHO05D004266 2.8e-10 67.8 38 86.8
Haze_18948 Corylus avellana HOM05D003579 ORTHO05D004266 2.8e-10 67.8 38 86.8
FvH4_5g17820 Fragaria vesca HOM05D003579 ORTHO05D004266 2.8e-10 67.8 38 86.8
FAN04G1919 Fragaria x ananassa HOM05D003579 ORTHO05D004266 2.8e-10 67.8 38 86.8
FAN08G1300 Fragaria x ananassa HOM05D003579 ORTHO05D004266 2.8e-10 67.8 38 86.8
FAN18G3127 Fragaria x ananassa HOM05D003579 ORTHO05D004266 2.8e-10 67.8 38 86.8
Hma1.2p1_0471F.1_g159320 Hydrangea macrophylla HOM05D003579 ORTHO05D004266 2.8e-10 67.8 38 86.8
MD06G1234200 Malus domestica HOM05D003579 ORTHO05D004266 2.8e-10 67.8 38 86.8
MD14G1240900 Malus domestica HOM05D003579 ORTHO05D004266 2.8e-10 67.8 38 86.8
Nn4g24545 Nelumbo nucifera HOM05D003579 ORTHO05D004266 2.8e-10 67.8 38 86.8
Prupe.5G238700 Prunus persica HOM05D003579 ORTHO05D004266 2.8e-10 67.8 38 86.8
QL10p038058 Quercus lobata HOM05D003579 ORTHO05D004266 2.8e-10 67.8 38 86.8
Rhsim08G0128400 Rhododendron simsii HOM05D003579 ORTHO05D004266 2.8e-10 67.8 38 86.8
RcHm_v2.0_Chr7g0177761 Rosa chinensis HOM05D003579 ORTHO05D004266 2.8e-10 67.8 38 86.8
GSVIVG01012941001 Vitis vinifera HOM05D003579 ORTHO05D004266 2.8e-10 67.8 38 86.8
DCAR_011388 Daucus carota HOM05D003579 ORTHO05D004266 3.7e-10 67.4 51 64.7
Eucgr.H00571 Eucalyptus grandis HOM05D003579 ORTHO05D004266 3.7e-10 67.4 38 86.8
Lalb_Chr14g0370501 Lupinus albus HOM05D003579 ORTHO05D004266 3.7e-10 67.4 38 86.8
MBI13_g21695_MAGBIO Magnolia biondii HOM05D003579 ORTHO05D004266 3.7e-10 67.4 38 86.8
Potri.012G041100 Populus trichocarpa HOM05D003579 ORTHO05D004266 3.7e-10 67.4 38 86.8
Sabra12G0028200 Salix brachista HOM05D003579 ORTHO05D004266 3.7e-10 67.4 38 86.8
Sabra15G0026700 Salix brachista HOM05D003579 ORTHO05D004266 3.7e-10 67.4 38 86.8
SabraUnG0005900 Salix brachista HOM05D003579 ORTHO05D004266 3.7e-10 67.4 38 86.8
HPP92_013127 Vanilla planifolia HOM05D003579 ORTHO05D004266 3.7e-10 67.4 38 86.8
Ah.14g085880 Amaranthus hybridus HOM05D003579 ORTHO05D004266 4.8e-10 67.0 51 68.6
CiPaw.15G149000 Carya illinoinensis HOM05D003579 ORTHO05D004266 4.8e-10 67.0 38 84.2
AUR62034013 Chenopodium quinoa HOM05D003579 ORTHO05D004266 4.8e-10 67.0 39 82.1
Aqoxy3G00001 Aquilegia oxysepala HOM05D003579 ORTHO05D004266 6.3e-10 66.6 38 84.2
AL1G55060 Arabidopsis lyrata HOM05D003579 ORTHO05D004266 6.3e-10 66.6 38 86.8
AT1G48430 Arabidopsis thaliana HOM05D003579 ORTHO05D004266 6.3e-10 66.6 38 86.8
arahy.Tifrunner.gnm1.ann1.7TIF1A Arachis hypogaea HOM05D003579 ORTHO05D004266 6.3e-10 66.6 38 84.2
arahy.Tifrunner.gnm1.ann1.N38075 Arachis hypogaea HOM05D003579 ORTHO05D004266 6.3e-10 66.6 38 84.2
EL10Ac8g19495 Beta vulgaris HOM05D003579 ORTHO05D004266 6.3e-10 66.6 39 84.6
Cc04_g09220 Coffea canephora HOM05D003579 ORTHO05D004266 6.3e-10 66.6 38 84.2
FAN13G2047 Fragaria x ananassa HOM05D003579 ORTHO05D004266 6.3e-10 66.6 38 84.2
Glyma.15G201250 Glycine max HOM05D003579 ORTHO05D004266 6.3e-10 66.6 38 86.8
PGR083G0897 Punica granatum HOM05D003579 ORTHO05D004266 6.3e-10 66.6 38 81.6
Actinidia34663 Actinidia chinensis HOM05D003579 ORTHO05D004266 8.3e-10 66.2 38 84.2
PSO017G1464 Papaver somniferum HOM05D003579 ORTHO05D004266 8.3e-10 66.2 38 84.2
PSO478G0806 Papaver somniferum HOM05D003579 ORTHO05D004266 8.3e-10 66.2 38 84.2
SGA_v2.0_scaffold74G24677 Striga asiatica HOM05D003579 ORTHO05D004266 8.3e-10 66.2 38 84.2
vmacro17766 Vaccinium macrocarpon HOM05D003579 ORTHO05D004266 8.3e-10 66.2 38 86.8
ATR0598G272 Amborella trichopoda HOM05D003579 ORTHO05D004266 1.1e-09 65.9 38 81.6
CAN.G65.87 Capsicum annuum HOM05D003579 ORTHO05D004266 1.1e-09 65.9 38 84.2
CsaV3_1G004890 Cucumis sativus L. HOM05D003579 ORTHO05D004266 1.1e-09 65.9 38 84.2
Manes.06G001700 Manihot esculenta HOM05D003579 ORTHO05D004266 1.1e-09 65.9 38 84.2
Nn3g19567 Nelumbo nucifera HOM05D003579 ORTHO05D004266 1.1e-09 65.9 38 86.8
TWI60G0145 Tripterygium wilfordii HOM05D003579 ORTHO05D004266 1.1e-09 65.9 38 84.2
unitig_736.g22827 Utricularia gibba HOM05D003579 ORTHO05D004266 1.1e-09 65.9 38 84.2
HPP92_013151 Vanilla planifolia HOM05D003579 ORTHO05D004266 1.1e-09 65.9 38 84.2
CARHR038050 Cardamine hirsuta HOM05D003579 ORTHO05D004266 1.4e-09 65.5 38 86.8
Ciclev10019405m.g Citrus clementina HOM05D003579 ORTHO05D004266 1.4e-09 65.5 38 84.2
Thhalv10011337m.g Eutrema salsugineum HOM05D003579 ORTHO05D004266 1.4e-09 65.5 38 86.8
Sp1g35380 Schrenkiella parvula HOM05D003579 ORTHO05D004266 1.4e-09 65.5 38 86.8
Sed0003427 Sechium edule HOM05D003579 ORTHO05D004266 1.4e-09 65.5 38 84.2
MSTRG.9359 Avicennia marina HOM05D003579 ORTHO05D004266 1.8e-09 65.1 38 81.6
Nitab4.5_0000033g0340 Nicotiana tabacum HOM05D003579 ORTHO05D004266 1.8e-09 65.1 38 84.2
Nitab4.5_0003127g0010 Nicotiana tabacum HOM05D003579 ORTHO05D004266 1.8e-09 65.1 38 84.2
Peaxi162Scf00643g00664 Petunia axillaris HOM05D003579 ORTHO05D004266 1.8e-09 65.1 38 84.2
PGR044G2375 Punica granatum HOM05D003579 ORTHO05D004266 1.8e-09 65.1 38 84.2
Cc04_g09210 Coffea canephora HOM05D003579 ORTHO05D004266 2.4e-09 64.7 38 81.6
SalBow1G2020 Salvia bowleyana HOM05D003579 ORTHO05D004266 2.4e-09 64.7 38 84.2
Carub.0001s3756 Capsella rubella HOM05D003579 ORTHO05D004266 3.1e-09 64.3 38 84.2
BcaC07g37135 Brassica carinata HOM05D003579 ORTHO05D004266 4.1e-09 63.9 38 84.2
A08p04710 Brassica napus HOM05D003579 ORTHO05D004266 4.1e-09 63.9 38 84.2
BolC8t47313H Brassica oleracea HOM05D003579 ORTHO05D004266 4.1e-09 63.9 38 84.2
BraA08t32501Z Brassica rapa HOM05D003579 ORTHO05D004266 4.1e-09 63.9 38 84.2
ClCG04G012750 Citrullus lanatus HOM05D003579 ORTHO05D004266 4.1e-09 63.9 37 83.8
MELO3C001926.2 Cucumis melo HOM05D003579 ORTHO05D004266 4.1e-09 63.9 37 83.8
Duzib205G0446 Durio zibethinus HOM05D003579 ORTHO05D004266 4.1e-09 63.9 38 84.2
Migut.D01207 Erythranthe guttata HOM05D003579 ORTHO05D004266 4.1e-09 63.9 37 83.8
Os03g0719300 Oryza sativa ssp. japonica HOM05D003579 ORTHO05D004266 5.4e-09 63.5 38 78.9
Psat1g124800 Pisum sativum HOM05D003579 ORTHO05D004266 5.4e-09 63.5 39 79.5
TPR.G31707 Trifolium pratense HOM05D003579 ORTHO05D004266 5.4e-09 63.5 39 79.5
AL3G30930 Arabidopsis lyrata HOM05D003579 ORTHO05D004266 7.0e-09 63.2 38 84.2
AT3G17770 Arabidopsis thaliana HOM05D003579 ORTHO05D004266 7.0e-09 63.2 38 84.2
A05p32070 Brassica napus HOM05D003579 ORTHO05D004266 7.0e-09 63.2 38 84.2
C05p48570 Brassica napus HOM05D003579 ORTHO05D004266 7.0e-09 63.2 38 84.2
BolC5t33593H Brassica oleracea HOM05D003579 ORTHO05D004266 7.0e-09 63.2 38 84.2
BraA05t22036Z Brassica rapa HOM05D003579 ORTHO05D004266 7.0e-09 63.2 38 84.2
CARHR093110 Cardamine hirsuta HOM05D003579 ORTHO05D004266 7.0e-09 63.2 38 84.2
Thhalv10020350m.g Eutrema salsugineum HOM05D003579 ORTHO05D004266 7.0e-09 63.2 38 84.2
Sp3g15890 Schrenkiella parvula HOM05D003579 ORTHO05D004266 7.0e-09 63.2 38 84.2
Ca_20292_v3 Cicer arietinum L. HOM05D003579 ORTHO05D004266 9.1e-09 62.8 39 79.5
Eucgr.K02291 Eucalyptus grandis HOM05D003579 ORTHO05D004266 9.1e-09 62.8 38 81.6
C08p05080 Brassica napus HOM05D003579 ORTHO05D004266 1.2e-08 62.4 38 81.6
ECA233G2231 Erigeron canadensis HOM05D003579 ORTHO05D004266 1.2e-08 62.4 38 84.2
HanXRQChr03g0087091 Helianthus annuus HOM05D003579 ORTHO05D004266 1.2e-08 62.4 38 84.2
Lj2g0026679 Lotus japonicus HOM05D003579 ORTHO05D004266 1.2e-08 62.4 38 78.9
Pp3c10_19150 Physcomitrium patens HOM05D003579 ORTHO05D004266 1.2e-08 62.4 46 67.4
Pp3c4_4070 Physcomitrium patens HOM05D003579 ORTHO05D004266 1.2e-08 62.4 46 67.4
Aa31LG8G4650 Aethionema arabicum HOM05D003579 ORTHO05D004266 2.0e-08 61.6 38 81.6
Carub.0003s1749 Capsella rubella HOM05D003579 ORTHO05D004266 2.0e-08 61.6 38 81.6
COL.COLO4_24456 Corchorus olitorius HOM05D003579 ORTHO05D004266 2.0e-08 61.6 51 66.7
Gohir.A03G091600 Gossypium hirsutum HOM05D003579 ORTHO05D004266 2.0e-08 61.6 51 66.7
Gohir.D02G120000 Gossypium hirsutum HOM05D003579 ORTHO05D004266 2.0e-08 61.6 51 66.7
Gorai.005G134000 Gossypium raimondii HOM05D003579 ORTHO05D004266 2.0e-08 61.6 51 66.7
Pp3c3_29160 Physcomitrium patens HOM05D003579 ORTHO05D004266 2.0e-08 61.6 51 62.7
Thecc.03G066100 Theobroma cacao HOM05D003579 ORTHO05D004266 2.0e-08 61.6 51 66.7
Lsat_1_v5_gn_8_1741 Lactuca sativa HOM05D003579 ORTHO05D004266 2.7e-08 61.2 38 81.6
SEGI_07046 Sequoiadendron giganteum HOM05D003579 ORTHO05D004266 2.7e-08 61.2 51 62.7
Cpa.g.sc3.337 Carica papaya HOM05D003579 ORTHO05D004266 3.5e-08 60.8 38 78.9
Lj2g0001753 Lotus japonicus HOM05D003579 ORTHO05D004266 3.5e-08 60.8 38 76.3
Duzib084G0133 Durio zibethinus HOM05D003579 ORTHO05D004266 4.5e-08 60.5 51 64.7
Gohir.A07G060800 Gossypium hirsutum HOM05D003579 ORTHO05D004266 5.9e-08 60.1 51 64.7
Gorai.001G069000 Gossypium raimondii HOM05D003579 ORTHO05D004266 5.9e-08 60.1 51 64.7
Medtr6g073003 Medicago truncatula HOM05D003579 ORTHO05D004266 5.9e-08 60.1 39 74.4
TAR028G0001 Trochodendron aralioides HOM05D003579 ORTHO05D004266 1.0e-07 59.3 35 80.0
Lsat_1_v5_gn_5_188701 Lactuca sativa HOM05D003579 ORTHO05D025634 2.2e-07 58.2 46 67.4
AagrBONN_evm.TU.Sc2ySwM_228.5556 Anthoceros agrestis HOM05D003579 ORTHO05D004266 2.9e-07 57.8 46 60.9
arahy.Tifrunner.gnm1.ann1.U86FK3 Arachis hypogaea HOM05D003579 ORTHO05D009264 5.0e-07 57.0 38 76.3
Lsat_1_v5_gn_6_17001 Lactuca sativa HOM05D003579 ORTHO05D025634 1.1e-06 55.8 36 77.8
Mapoly0125s0006 Marchantia polymorpha HOM05D003579 ORTHO05D004266 1.9e-06 55.1 46 58.7
SMO230G0064 Selaginella moellendorffii HOM05D003579 ORTHO05D004266 3.2e-06 54.3 46 58.7
BcaNung05880 Brassica carinata HOM05D003579 ORTHO05D004266 5.5e-06 53.5 33 81.8
Lsat_1_v5_gn_8_41041 Lactuca sativa HOM05D003579 ORTHO05D005739 7.2e-06 53.1 36 75.0
Oeu016194.1 Olea europaea HOM05D002938 ORTHO05D002074 7.2e-06 53.1 33 75.8
Lsat_1_v5_gn_6_16260 Lactuca sativa HOM05D003579 ORTHO05D025634 9.5e-06 52.8 36 75.0


User provided reference genes

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