Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G155400 Glycine max HOM05D001200 ORTHO05D009778 2.0e-27 125.2 69 100.0
PGR111G0025 Punica granatum HOM05D001200 ORTHO05D009778 4.7e-21 104.0 77 77.9
Medtr4g006110 Medicago truncatula HOM05D007371 ORTHO05D009319 8.1e-21 103.2 77 76.6
Medtr5g063410 Medicago truncatula HOM05D007371 ORTHO05D009319 8.1e-21 103.2 77 76.6
Medtr7g021710 Medicago truncatula HOM05D007371 ORTHO05D009319 8.1e-21 103.2 77 76.6
CAN.G1526.7 Capsicum annuum HOM05D001200 ORTHO05D009778 1.1e-20 102.8 77 76.6
CAN.G278.3 Capsicum annuum HOM05D001200 ORTHO05D009778 1.1e-20 102.8 77 76.6
Hma1.2p1_0656F.1_g196803 Hydrangea macrophylla HOM05D001200 ORTHO05D009778 1.1e-20 102.8 77 76.6
Lalb_Chr07g0191771 Lupinus albus HOM05D001200 ORTHO05D009778 1.1e-20 102.8 77 76.6
Nn1g08634 Nelumbo nucifera HOM05D001200 ORTHO05D009778 1.1e-20 102.8 77 76.6
RcHm_v2.0_Chr5g0017211 Rosa chinensis HOM05D001200 ORTHO05D009778 1.1e-20 102.8 77 76.6
RcHm_v2.0_CPg0502771 Rosa chinensis HOM05D001200 ORTHO05D009778 1.1e-20 102.8 77 76.6
PGSC0003DMG402011339 Solanum tuberosum HOM05D001200 ORTHO05D009778 1.1e-20 102.8 77 76.6
Gohir.1Z049531 Gossypium hirsutum HOM05D001200 ORTHO05D009778 1.4e-20 102.4 77 75.3
Gohir.A02G134500 Gossypium hirsutum HOM05D001200 ORTHO05D009778 1.4e-20 102.4 77 75.3
Gohir.A04G053130 Gossypium hirsutum HOM05D001200 ORTHO05D009778 1.4e-20 102.4 77 75.3
Gohir.A09G040995 Gossypium hirsutum HOM05D001200 ORTHO05D009778 1.4e-20 102.4 77 75.3
Nn064s42210 Nelumbo nucifera HOM05D001200 ORTHO05D009778 1.8e-20 102.1 77 75.3
DCAR_032538 Daucus carota HOM05D001200 ORTHO05D009778 2.4e-20 101.7 77 74.0
Nitab4.5_0007979g0060 Nicotiana tabacum HOM05D001200 ORTHO05D009778 3.1e-20 101.3 76 75.0
RcHm_v2.0_Chr5g0043031 Rosa chinensis HOM05D001200 ORTHO05D009778 3.1e-20 101.3 77 75.3
HanXRQChr00c0336g0573661 Helianthus annuus HOM05D001200 ORTHO05D009778 4.0e-20 100.9 77 72.7
HanXRQChr02g0059711 Helianthus annuus HOM05D001200 ORTHO05D002731 4.0e-20 100.9 77 72.7
HanXRQChr05g0152441 Helianthus annuus HOM05D001200 ORTHO05D009778 4.0e-20 100.9 77 72.7
HanXRQChr09g0258511 Helianthus annuus HOM05D001200 ORTHO05D009778 4.0e-20 100.9 77 72.7
HanXRQChr11g0323751 Helianthus annuus HOM05D001200 ORTHO05D009778 4.0e-20 100.9 77 72.7
HanXRQChr15g0465441 Helianthus annuus HOM05D001200 ORTHO05D009778 4.0e-20 100.9 77 72.7
HanXRQChr15g0465451 Helianthus annuus HOM05D001200 ORTHO05D009778 4.0e-20 100.9 77 72.7
HanXRQChr17g0569731 Helianthus annuus HOM05D001200 ORTHO05D009778 4.0e-20 100.9 77 72.7
HanXRQCPg0580351 Helianthus annuus HOM05D001200 ORTHO05D002731 4.0e-20 100.9 77 72.7
EL10As15g24099 Beta vulgaris HOM05D001200 ORTHO05D009778 6.9e-20 100.1 77 72.7
EL10As15g24137 Beta vulgaris HOM05D001200 ORTHO05D002731 6.9e-20 100.1 77 72.7
HanXRQChr02g0040741 Helianthus annuus HOM05D001200 ORTHO05D009778 6.9e-20 100.1 77 72.7
MBI10_g47590_MAGBIO Magnolia biondii HOM05D001200 ORTHO05D002731 6.9e-20 100.1 77 74.0
MBI10_g47593_MAGBIO Magnolia biondii HOM05D001200 ORTHO05D002731 6.9e-20 100.1 77 74.0
Sed0017608 Sechium edule HOM05D000533 ORTHO05D006151 1.2e-19 99.4 77 72.7
Gohir.D04G175000 Gossypium hirsutum HOM05D001200 ORTHO05D009778 2.0e-19 98.6 77 72.7
Lalb_Chr19g0127811 Lupinus albus HOM05D001200 ORTHO05D009778 2.0e-19 98.6 77 75.3
Migut.D01252 Erythranthe guttata HOM05D001200 ORTHO05D009778 4.4e-19 97.4 77 71.4
PSO548G0037 Papaver somniferum HOM05D001200 ORTHO05D009778 4.4e-19 97.4 77 72.7
arahy.Tifrunner.gnm1.ann1.4VL02K Arachis hypogaea HOM05D001200 ORTHO05D009778 7.6e-19 96.7 77 74.0
arahy.Tifrunner.gnm1.ann1.9I8ZI2 Arachis hypogaea HOM05D001200 ORTHO05D009778 7.6e-19 96.7 77 74.0
arahy.Tifrunner.gnm1.ann1.V71EA1 Arachis hypogaea HOM05D001200 ORTHO05D009778 7.6e-19 96.7 77 74.0
C07p33450 Brassica napus HOM05D001200 ORTHO05D009778 7.6e-19 96.7 77 71.4
C09p40190 Brassica napus HOM05D001200 ORTHO05D009778 7.6e-19 96.7 77 71.4
BolC2t10596H Brassica oleracea HOM05D001200 ORTHO05D009778 7.6e-19 96.7 77 71.4
BolSC35t60704H Brassica oleracea HOM05D001200 ORTHO05D009778 7.6e-19 96.7 77 71.4
BolSC37t60793H Brassica oleracea HOM05D001200 ORTHO05D009778 7.6e-19 96.7 77 71.4
BolSC44t60822H Brassica oleracea HOM05D001200 ORTHO05D009778 7.6e-19 96.7 77 71.4
BolSC46t60958H Brassica oleracea HOM05D001200 ORTHO05D009778 7.6e-19 96.7 77 71.4
BolSC47t61065H Brassica oleracea HOM05D001200 ORTHO05D009778 7.6e-19 96.7 77 71.4
BraA10t43432Z Brassica rapa HOM05D001200 ORTHO05D009778 7.6e-19 96.7 77 71.4
BraSC59t46551Z Brassica rapa HOM05D001200 ORTHO05D009778 7.6e-19 96.7 77 71.4
AL9U11954 Arabidopsis lyrata HOM05D001200 ORTHO05D009778 9.9e-19 96.3 77 71.4
ATCG01070 Arabidopsis thaliana HOM05D001200 ORTHO05D009778 9.9e-19 96.3 77 71.4
CAN.G965.6 Capsicum annuum HOM05D001200 ORTHO05D009778 9.9e-19 96.3 77 72.7
CARHR282440 Cardamine hirsuta HOM05D001200 ORTHO05D009778 9.9e-19 96.3 77 71.4
Nn1g00558 Nelumbo nucifera HOM05D001200 ORTHO05D009778 1.7e-18 95.5 76 73.7
BolC9t56923H Brassica oleracea HOM05D001200 ORTHO05D009778 3.8e-18 94.4 77 70.1
HanXRQChr13g0393091 Helianthus annuus HOM05D001200 ORTHO05D009778 6.4e-18 93.6 77 68.8
HanXRQChr17g0569741 Helianthus annuus HOM05D001200 ORTHO05D009778 6.4e-18 93.6 58 81.0
Manes.17G012600 Manihot esculenta HOM05D001200 ORTHO05D009778 6.4e-18 93.6 77 70.1
SEGI_22361 Sequoiadendron giganteum HOM05D001200 ORTHO05D009778 8.4e-18 93.2 77 64.9
BolC6t36203H Brassica oleracea HOM05D001200 ORTHO05D009778 2.4e-17 91.7 76 68.4
BolSC29t60506H Brassica oleracea HOM05D001200 ORTHO05D009778 2.4e-17 91.7 63 76.2
Gohir.D13G164800 Gossypium hirsutum HOM05D001200 ORTHO05D009778 2.4e-17 91.7 77 67.5
Gohir.A08G113700 Gossypium hirsutum HOM05D001200 ORTHO05D009778 3.2e-17 91.3 76 71.1
HanXRQChr02g0038711 Helianthus annuus HOM05D001200 ORTHO05D009778 3.2e-17 91.3 58 79.3
Nitab4.5_0001313g0070 Nicotiana tabacum HOM05D001200 ORTHO05D009778 4.2e-17 90.9 76 71.1
HanXRQChr02g0038671 Helianthus annuus HOM05D001200 ORTHO05D009778 7.1e-17 90.1 58 77.6
BolSC45t60909H Brassica oleracea HOM05D001200 ORTHO05D009778 1.2e-16 89.4 58 79.3
BraSC103t45429Z Brassica rapa HOM05D001200 ORTHO05D009778 1.2e-16 89.4 58 79.3
HanXRQChr17g0557751 Helianthus annuus HOM05D001200 ORTHO05D009778 1.6e-16 89.0 58 77.6
BraSC179t45774Z Brassica rapa HOM05D001200 ORTHO05D009778 2.7e-16 88.2 58 77.6
Gohir.A01G112200 Gossypium hirsutum HOM05D001200 ORTHO05D009778 1.7e-15 85.5 77 64.9
HanXRQChr01g0000241 Helianthus annuus HOM05D001200 ORTHO05D009778 8.7e-15 83.2 50 82.0
BraSC143t45660Z Brassica rapa HOM05D001200 ORTHO05D009778 4.3e-14 80.9 51 80.4
LjContig00318g0024402 Lotus japonicus HOM05D001200 ORTHO05D009778 4.3e-14 80.9 68 72.1
LjContig00319g0019579 Lotus japonicus HOM05D001200 ORTHO05D009778 4.3e-14 80.9 68 72.1
Nitab4.5_0001342g0130 Nicotiana tabacum HOM05D001200 ORTHO05D002731 4.3e-14 80.9 68 66.2
C09p24640 Brassica napus HOM05D001200 ORTHO05D009778 5.6e-14 80.5 52 80.8
BolSC29t60546H Brassica oleracea HOM05D001200 ORTHO05D009778 5.6e-14 80.5 52 80.8
Glyma.08G367600 Glycine max HOM05D001200 ORTHO05D009778 1.3e-13 79.3 52 84.6
BolSC35t60692H Brassica oleracea HOM05D001200 ORTHO05D009778 2.1e-13 78.6 51 80.4
arahy.Tifrunner.gnm1.ann1.DP5I98 Arachis hypogaea HOM05D001200 ORTHO05D009778 2.8e-13 78.2 69 69.6
BolSC49t61143H Brassica oleracea HOM05D001200 ORTHO05D009778 1.4e-12 75.9 53 79.2
Lj2g0021700 Lotus japonicus HOM05D001200 ORTHO05D009778 1.8e-12 75.5 68 69.1
Phvul.011G095700 Phaseolus vulgaris HOM05D001200 ORTHO05D009778 2.9e-10 68.2 64 65.6
Oeu019750.1 Olea europaea HOM05D001200 ORTHO05D009778 3.5e-08 61.2 53 62.3
C02p52240 Brassica napus HOM05D001200 ORTHO05D009778 1.8e-07 58.9 82 52.4
Nn3g19076 Nelumbo nucifera HOM05D001200 ORTHO05D009778 8.7e-07 56.6 51 66.7
HanXRQChr08g0231311 Helianthus annuus HOM05D001200 ORTHO05D009778 1.5e-06 55.8 51 62.7
HanXRQChr10g0289681 Helianthus annuus HOM05D001200 ORTHO05D009778 1.9e-06 55.5 68 54.4
Medtr0002s0170 Medicago truncatula HOM05D001200 ORTHO05D002731 2.5e-06 55.1 51 60.8


User provided reference genes

Program Settings