Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G148901 Glycine max HOM05D003313 ORTHO05D004217 6.9e-37 156.8 77 100.0
Glyma.19G223400 Glycine max HOM05D003313 ORTHO05D004217 9.9e-36 152.9 76 97.4
Glyma.20G050100 Glycine max HOM05D003313 ORTHO05D004217 9.9e-36 152.9 76 97.4
Glyma.03G226400 Glycine max HOM05D003313 ORTHO05D004217 2.2e-35 151.8 76 96.1
Phvul.001G220300 Phaseolus vulgaris HOM05D003313 ORTHO05D004217 2.4e-34 148.3 77 96.1
VMungo1383G1216 Vigna mungo HOM05D003313 ORTHO05D004217 5.5e-34 147.1 77 94.8
Lj1g0026129 Lotus japonicus HOM05D003313 ORTHO05D004217 6.0e-33 143.7 77 92.2
Lalb_Chr15g0077831 Lupinus albus HOM05D003313 ORTHO05D004217 7.9e-33 143.3 77 92.2
arahy.Tifrunner.gnm1.ann1.9JB77L Arachis hypogaea HOM05D003313 ORTHO05D004217 1.0e-32 142.9 76 94.7
arahy.Tifrunner.gnm1.ann1.XWZQ7T Arachis hypogaea HOM05D003313 ORTHO05D004217 1.0e-32 142.9 76 94.7
Ca_09260_v3 Cicer arietinum L. HOM05D003313 ORTHO05D004217 3.0e-32 141.4 77 90.9
Medtr7g111080 Medicago truncatula HOM05D003313 ORTHO05D004217 3.0e-32 141.4 77 90.9
Psat3g015640 Pisum sativum HOM05D003313 ORTHO05D004217 3.0e-32 141.4 77 90.9
TPR.G8375 Trifolium pratense HOM05D003313 ORTHO05D004217 3.0e-32 141.4 77 90.9
QL11p018449 Quercus lobata HOM05D003313 ORTHO05D004217 8.7e-32 139.8 77 87.0
Lalb_Chr18g0046271 Lupinus albus HOM05D003313 ORTHO05D004217 9.6e-31 136.3 77 85.7
GSVIVG01029823001 Vitis vinifera HOM05D003313 ORTHO05D004217 1.3e-30 136.0 77 85.7
ClCG09G008380 Citrullus lanatus HOM05D003313 ORTHO05D004217 1.6e-30 135.6 77 85.7
MELO3C021123.2 Cucumis melo HOM05D003313 ORTHO05D004217 1.6e-30 135.6 77 85.7
CsaV3_7G026710 Cucumis sativus L. HOM05D003313 ORTHO05D004217 1.6e-30 135.6 77 85.7
PSO541G4460 Papaver somniferum HOM05D003313 ORTHO05D004217 1.6e-30 135.6 77 85.7
PSO675G1011 Papaver somniferum HOM05D003313 ORTHO05D004217 1.6e-30 135.6 77 85.7
Sed0021054 Sechium edule HOM05D003313 ORTHO05D004217 1.6e-30 135.6 77 85.7
TAR624G0023 Trochodendron aralioides HOM05D003313 ORTHO05D004217 1.6e-30 135.6 77 85.7
TAR624G1107 Trochodendron aralioides HOM05D003313 ORTHO05D004217 1.6e-30 135.6 77 85.7
ATR0620G123 Amborella trichopoda HOM05D003313 ORTHO05D004217 2.1e-30 135.2 77 84.4
Gohir.D08G091400 Gossypium hirsutum HOM05D003313 ORTHO05D004217 2.1e-30 135.2 77 87.0
Gorai.004G096900 Gossypium raimondii HOM05D003313 ORTHO05D004217 2.1e-30 135.2 77 87.0
Cpa.g.sc17.18 Carica papaya HOM05D003313 ORTHO05D004217 2.8e-30 134.8 77 84.4
Dinv30970 Davidia involucrata HOM05D003313 ORTHO05D004217 2.8e-30 134.8 77 83.1
Duzib150G0949 Durio zibethinus HOM05D003313 ORTHO05D004217 2.8e-30 134.8 77 85.7
ECA240G0535 Erigeron canadensis HOM05D003313 ORTHO05D004217 2.8e-30 134.8 77 81.8
Eucgr.B01361 Eucalyptus grandis HOM05D003313 ORTHO05D004217 2.8e-30 134.8 77 84.4
Cfa004406 Carpinus fangiana HOM05D003313 ORTHO05D004217 3.7e-30 134.4 76 85.5
Haze_14997 Corylus avellana HOM05D003313 ORTHO05D004217 3.7e-30 134.4 76 85.5
Nn3g20244 Nelumbo nucifera HOM05D003313 ORTHO05D004217 3.7e-30 134.4 77 84.4
Hma1.2p1_0052F.1_g030180 Hydrangea macrophylla HOM05D003313 ORTHO05D004217 6.2e-30 133.7 77 83.1
Gohir.A08G082000 Gossypium hirsutum HOM05D003313 ORTHO05D004217 8.1e-30 133.3 77 85.7
HanXRQChr15g0468281 Helianthus annuus HOM05D003313 ORTHO05D004217 8.1e-30 133.3 76 84.2
THA.LOC104814960 Tarenaya hassleriana HOM05D003313 ORTHO05D004217 8.1e-30 133.3 77 84.4
Ah.13g077320 Amaranthus hybridus HOM05D003313 ORTHO05D004217 1.1e-29 132.9 77 81.8
Aqoxy1G01346 Aquilegia oxysepala HOM05D003313 ORTHO05D004217 1.1e-29 132.9 77 83.1
AUR62018429 Chenopodium quinoa HOM05D003313 ORTHO05D004217 1.1e-29 132.9 77 81.8
AUR62021005 Chenopodium quinoa HOM05D003313 ORTHO05D004217 1.1e-29 132.9 77 81.8
Sp2g22700 Schrenkiella parvula HOM05D003313 ORTHO05D004217 1.1e-29 132.9 77 83.1
HPP92_021469 Vanilla planifolia HOM05D003313 ORTHO05D004217 1.1e-29 132.9 77 84.4
MBI07_g10943_MAGBIO Magnolia biondii HOM05D003313 ORTHO05D004217 1.8e-29 132.1 77 81.8
AT5G24710 Arabidopsis thaliana HOM05D003313 ORTHO05D004217 2.4e-29 131.7 77 81.8
BcaNung01252 Brassica carinata HOM05D003313 ORTHO05D004217 2.4e-29 131.7 77 81.8
A06p35540 Brassica napus HOM05D003313 ORTHO05D004217 2.4e-29 131.7 77 81.8
C07p43000 Brassica napus HOM05D003313 ORTHO05D004217 2.4e-29 131.7 77 81.8
BolC7t44829H Brassica oleracea HOM05D003313 ORTHO05D004217 2.4e-29 131.7 77 81.8
BraA06t26479Z Brassica rapa HOM05D003313 ORTHO05D004217 2.4e-29 131.7 77 81.8
CSS0016348 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 2.4e-29 131.7 77 83.1
CARHR188770 Cardamine hirsuta HOM05D003313 ORTHO05D004217 2.4e-29 131.7 77 81.8
Thhalv10003520m.g Eutrema salsugineum HOM05D003313 ORTHO05D004217 2.4e-29 131.7 77 81.8
Atru.chr3.2031 Acer truncatum HOM05D003313 ORTHO05D004217 4.0e-29 131.0 77 83.1
Lsat_1_v5_gn_7_68120 Lactuca sativa HOM05D003313 ORTHO05D004217 4.0e-29 131.0 69 87.0
Prupe.8G187800 Prunus persica HOM05D003313 ORTHO05D004217 4.0e-29 131.0 77 83.1
Thecc.09G202800 Theobroma cacao HOM05D003313 ORTHO05D004217 4.0e-29 131.0 77 83.1
Aa31LG11G3950 Aethionema arabicum HOM05D003313 ORTHO05D004217 5.3e-29 130.6 77 81.8
Actinidia11708 Actinidia chinensis HOM05D003313 ORTHO05D004217 6.9e-29 130.2 77 81.8
CSS0044155 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 6.9e-29 130.2 77 81.8
Ciclev10018511m.g Citrus clementina HOM05D003313 ORTHO05D004217 9.0e-29 129.8 77 83.1
Manes.11G105500 Manihot esculenta HOM05D003313 ORTHO05D004217 9.0e-29 129.8 77 81.8
CANSAT01G1610 Cannabis sativa HOM05D003313 ORTHO05D004217 1.2e-28 129.4 77 81.8
AL6G36310 Arabidopsis lyrata HOM05D003313 ORTHO05D004217 1.5e-28 129.0 77 80.5
Migut.B00692 Erythranthe guttata HOM05D003313 ORTHO05D004217 1.5e-28 129.0 77 79.2
Oeu016865.1 Olea europaea HOM05D003313 ORTHO05D004217 1.5e-28 129.0 77 80.5
Carub.0006s2256 Capsella rubella HOM05D003313 ORTHO05D004217 2.0e-28 128.6 77 79.2
Sc10g0005440 Simmondsia chinensis HOM05D003313 ORTHO05D004217 2.0e-28 128.6 77 80.5
MSTRG.27897 Avicennia marina HOM05D003313 ORTHO05D004217 2.6e-28 128.3 77 79.2
BcaNung07352 Brassica carinata HOM05D003313 ORTHO05D004217 2.6e-28 128.3 77 80.5
CSS0008361 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 2.6e-28 128.3 75 82.7
CSS0011425 Camellia sinensis var. sinensis HOM05D003313 ORTHO05D004217 2.6e-28 128.3 75 82.7
TWI38G1822 Tripterygium wilfordii HOM05D003313 ORTHO05D004217 3.4e-28 127.9 76 82.9
MD05G1154700 Malus domestica HOM05D003313 ORTHO05D004217 4.5e-28 127.5 77 80.5
MD10G1148900 Malus domestica HOM05D003313 ORTHO05D004217 4.5e-28 127.5 77 80.5
Peaxi162Scf00071g00133 Petunia axillaris HOM05D003313 ORTHO05D004217 4.5e-28 127.5 77 80.5
RcHm_v2.0_Chr6g0282501 Rosa chinensis HOM05D003313 ORTHO05D004217 4.5e-28 127.5 77 79.2
SalBow4G0229 Salvia bowleyana HOM05D003313 ORTHO05D004217 4.5e-28 127.5 77 79.2
SalBow4G1329 Salvia bowleyana HOM05D003313 ORTHO05D004217 4.5e-28 127.5 77 79.2
FvH4_2g17560 Fragaria vesca HOM05D003313 ORTHO05D004217 5.8e-28 127.1 77 79.2
FAN15G1274 Fragaria x ananassa HOM05D003313 ORTHO05D004217 5.8e-28 127.1 77 79.2
FAN24G1237 Fragaria x ananassa HOM05D003313 ORTHO05D004217 5.8e-28 127.1 77 79.2
FAN27G0740 Fragaria x ananassa HOM05D003313 ORTHO05D004217 5.8e-28 127.1 77 79.2
Hund24556 Selenicereus undatus HOM05D003313 ORTHO05D004217 5.8e-28 127.1 77 77.9
Lj5C312G5 Lonicera japonica HOM05D003313 ORTHO05D004217 7.6e-28 126.7 76 80.3
A09p06410 Brassica napus HOM05D003313 ORTHO05D004217 1.0e-27 126.3 77 79.2
BraA09t36285Z Brassica rapa HOM05D003313 ORTHO05D004217 1.0e-27 126.3 77 79.2
Potri.006G081800 Populus trichocarpa HOM05D003313 ORTHO05D004217 1.3e-27 125.9 78 80.8
DCAR_029311 Daucus carota HOM05D003313 ORTHO05D004217 1.7e-27 125.6 77 77.9
DCAR_032259 Daucus carota HOM05D003313 ORTHO05D004217 1.7e-27 125.6 77 77.9
Lj9C240T5 Lonicera japonica HOM05D003313 ORTHO05D004217 2.9e-27 124.8 77 77.9
CAN.G1379.33 Capsicum annuum HOM05D003313 ORTHO05D004217 4.9e-27 124.0 67 85.1
Nitab4.5_0004090g0090 Nicotiana tabacum HOM05D003313 ORTHO05D004217 4.9e-27 124.0 67 85.1
Os01g0653800 Oryza sativa ssp. japonica HOM05D003313 ORTHO05D004217 4.9e-27 124.0 77 77.9
Solyc01g102510.4 Solanum lycopersicum HOM05D003313 ORTHO05D004217 4.9e-27 124.0 67 85.1
Sopen01g044950 Solanum pennellii HOM05D003313 ORTHO05D004217 4.9e-27 124.0 67 85.1
PGSC0003DMG400018227 Solanum tuberosum HOM05D003313 ORTHO05D004217 4.9e-27 124.0 67 85.1
BcaC04g23548 Brassica carinata HOM05D003313 ORTHO05D004217 1.1e-26 122.9 76 78.9
C09p07140 Brassica napus HOM05D003313 ORTHO05D004217 1.1e-26 122.9 76 78.9
BolC9t53629H Brassica oleracea HOM05D003313 ORTHO05D004217 1.1e-26 122.9 76 78.9
Cc02_g36830 Coffea canephora HOM05D003313 ORTHO05D004217 1.1e-26 122.9 77 75.3
FAN27G0645 Fragaria x ananassa HOM05D003313 ORTHO05D004217 1.1e-26 122.9 68 82.4
vmacro01643 Vaccinium macrocarpon HOM05D003313 ORTHO05D004217 1.1e-26 122.9 85 72.9
Zm00001eb158110 Zea mays HOM05D003313 ORTHO05D004217 1.9e-26 122.1 77 75.3
unitig_699.g19829 Utricularia gibba HOM05D003313 ORTHO05D004217 3.2e-26 121.3 72 76.4
EL10Ac3g07331 Beta vulgaris HOM05D003313 ORTHO05D004217 5.5e-26 120.6 98 64.3
Zm00001eb359400 Zea mays HOM05D003313 ORTHO05D004217 5.5e-26 120.6 77 74.0
Hund19080 Selenicereus undatus HOM05D003313 ORTHO05D004217 1.2e-25 119.4 77 72.7
SEGI_06427 Sequoiadendron giganteum HOM05D003313 ORTHO05D004217 1.2e-25 119.4 77 70.1
Rhsim11G0111700 Rhododendron simsii HOM05D003313 ORTHO05D004217 1.1e-23 112.8 114 55.3
AagrBONN_evm.TU.Sc2ySwM_228.3123 Anthoceros agrestis HOM05D003313 ORTHO05D004217 1.5e-23 112.5 77 68.8
Gohir.D08G026350 Gossypium hirsutum HOM05D003313 ORTHO05D004217 4.3e-23 110.9 75 72.0
Gorai.004G022800 Gossypium raimondii HOM05D003313 ORTHO05D004217 4.3e-23 110.9 75 72.0
Gohir.A08G023424 Gossypium hirsutum HOM05D003313 ORTHO05D004217 4.8e-22 107.5 75 70.7
CiPaw.01G000300 Carya illinoinensis HOM05D003313 ORTHO05D004217 3.4e-20 101.3 72 69.4
Sabra06G0061800 Salix brachista HOM05D003313 ORTHO05D004217 2.9e-19 98.2 145 44.1
SMO116G0300 Selaginella moellendorffii HOM05D003313 ORTHO05D004217 5.0e-19 97.4 77 54.5
CBR_g3034 Chara braunii HOM05D003313 ORTHO05D004217 1.1e-18 96.3 76 55.3
Pp3c1_36370 Physcomitrium patens HOM05D003313 ORTHO05D004217 1.4e-18 95.9 74 58.1
Peaxi162Scf00194g00629 Petunia axillaris HOM05D003313 ORTHO05D004217 9.3e-18 93.2 67 68.7
Mapoly0031s0124 Marchantia polymorpha HOM05D003313 ORTHO05D004217 3.6e-17 91.3 76 56.6
CDE09G1422 Ceratophyllum demersum HOM05D003313 ORTHO05D004217 1.0e-16 89.7 58 74.1
QL09p014688 Quercus lobata HOM05D000257 ORTHO05D009129 1.3e-16 89.4 48 85.4
SHI06533 Sapria himalayana HOM05D003313 ORTHO05D004217 5.1e-16 87.4 58 74.1
Nitab4.5_0000399g0070 Nicotiana tabacum HOM05D003313 ORTHO05D004217 2.2e-14 82.0 52 73.1
Nitab4.5_0011890g0010 Nicotiana tabacum HOM05D003313 ORTHO05D004217 4.8e-14 80.9 52 71.2
Nitab4.5_0005421g0020 Nicotiana tabacum HOM05D003313 ORTHO05D004217 8.2e-14 80.1 44 81.8
DCAR_029787 Daucus carota HOM05D003313 ORTHO05D004217 2.4e-13 78.6 44 79.5
SMO353G0154 Selaginella moellendorffii HOM05D003313 ORTHO05D004217 1.1e-10 69.7 58 53.4
SGA_v2.0_scaffold311G48230 Striga asiatica HOM05D003313 ORTHO05D004217 4.2e-10 67.8 113 40.7


User provided reference genes

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