Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G146500 Glycine max HOM05D000236 ORTHO05D214460 1.2e-33 146.0 75 100.0
Glyma.18G220900 Glycine max HOM05D000236 ORTHO05D000192 4.1e-26 120.9 65 95.4
Glyma.09G268900 Glycine max HOM05D000236 ORTHO05D000192 8.5e-24 113.2 63 92.1
VMungo1383G3723 Vigna mungo HOM05D000236 ORTHO05D000192 8.8e-21 103.2 63 85.7
Phvul.008G076100 Phaseolus vulgaris HOM05D000236 ORTHO05D000192 4.8e-19 97.4 63 82.5
TPR.G28856 Trifolium pratense HOM05D000236 ORTHO05D000192 1.7e-16 89.0 63 79.4
arahy.Tifrunner.gnm1.ann1.Y6JJLD Arachis hypogaea HOM05D000236 ORTHO05D000192 3.8e-16 87.8 63 77.8
arahy.Tifrunner.gnm1.ann1.USAE67 Arachis hypogaea HOM05D000236 ORTHO05D000192 6.5e-16 87.0 63 76.2
Ca_23853_v3 Cicer arietinum L. HOM05D000236 ORTHO05D000192 1.1e-15 86.3 66 74.2
Lj1g0017033 Lotus japonicus HOM05D000236 ORTHO05D000192 5.5e-15 84.0 65 76.9
Psat3g115640 Pisum sativum HOM05D000236 ORTHO05D000192 9.4e-15 83.2 63 69.8
Glyma.01G143100 Glycine max HOM05D000236 ORTHO05D000192 2.7e-14 81.6 66 69.7
TPR.G21741 Trifolium pratense HOM05D000236 ORTHO05D000192 2.7e-14 81.6 72 65.3
Glyma.03G023500 Glycine max HOM05D000236 ORTHO05D000192 3.6e-14 81.3 67 68.7
Phvul.010G084600 Phaseolus vulgaris HOM05D000236 ORTHO05D000192 4.7e-14 80.9 69 68.1
Lalb_Chr07g0189761 Lupinus albus HOM05D000236 ORTHO05D000192 1.4e-13 79.3 64 71.9
Lalb_Chr13g0291721 Lupinus albus HOM05D000236 ORTHO05D000192 1.8e-13 79.0 65 70.8
Lj3g0023128 Lotus japonicus HOM05D000236 ORTHO05D000192 4.0e-13 77.8 65 69.2
Ca_07820_v3 Cicer arietinum L. HOM05D000236 ORTHO05D000192 6.8e-13 77.0 63 65.1
VMungo0331G1380 Vigna mungo HOM05D000236 ORTHO05D000192 6.8e-13 77.0 68 64.7
arahy.Tifrunner.gnm1.ann1.ZI4JU1 Arachis hypogaea HOM05D000236 ORTHO05D000192 8.8e-13 76.6 71 63.4
Medtr7g074935 Medicago truncatula HOM05D000236 ORTHO05D000192 1.5e-12 75.9 63 68.3
CiPaw.01G261600 Carya illinoinensis HOM05D000236 ORTHO05D000192 2.2e-11 72.0 63 66.7
TAR375G1054 Trochodendron aralioides HOM05D000236 ORTHO05D000192 2.2e-11 72.0 63 65.1
Psat4g149160 Pisum sativum HOM05D000236 ORTHO05D000192 3.7e-11 71.2 79 54.4
Lalb_Chr12g0208291 Lupinus albus HOM05D000236 ORTHO05D000192 8.3e-11 70.1 69 62.3
Medtr8g036160 Medicago truncatula HOM05D000236 ORTHO05D000192 1.1e-10 69.7 74 55.4
Cpa.g.sc349.2 Carica papaya HOM05D000236 ORTHO05D000192 2.4e-10 68.6 63 63.5
Manes.05G044900 Manihot esculenta HOM05D000236 ORTHO05D000192 3.1e-10 68.2 63 61.9
Atru.chr5.314 Acer truncatum HOM05D000236 ORTHO05D000192 4.1e-10 67.8 63 60.3
Haze_16821 Corylus avellana HOM05D000236 ORTHO05D000192 4.1e-10 67.8 64 67.2
Cfa001714 Carpinus fangiana HOM05D000236 ORTHO05D000192 7.0e-10 67.0 64 65.6
Potri.014G070000 Populus trichocarpa HOM05D000236 ORTHO05D000192 1.2e-09 66.2 63 60.3
GSVIVG01027617001 Vitis vinifera HOM05D000236 ORTHO05D000192 3.5e-09 64.7 63 58.7
Ciclev10021116m.g Citrus clementina HOM05D000236 ORTHO05D000192 4.5e-09 64.3 63 58.7
Dinv32381 Davidia involucrata HOM05D000236 ORTHO05D000192 4.5e-09 64.3 63 60.3
QL08p052292 Quercus lobata HOM05D000236 ORTHO05D000192 5.9e-09 63.9 65 61.5
Sabra02G0115800 Salix brachista HOM05D000236 ORTHO05D000192 1.3e-08 62.8 63 57.1
Sabra02G0117600 Salix brachista HOM05D000236 ORTHO05D000192 1.3e-08 62.8 63 57.1
Duzib133G1460 Durio zibethinus HOM05D000236 ORTHO05D000192 1.7e-08 62.4 71 54.9
Potri.002G148600 Populus trichocarpa HOM05D000236 ORTHO05D000192 1.7e-08 62.4 65 56.9
Sed0023301 Sechium edule HOM05D000236 ORTHO05D000192 1.7e-08 62.4 65 58.5
TWI59G0397 Tripterygium wilfordii HOM05D000236 ORTHO05D000192 1.7e-08 62.4 63 61.9
Sabra14G0049600 Salix brachista HOM05D000236 ORTHO05D000192 2.2e-08 62.0 63 58.7
Duzib138G0464 Durio zibethinus HOM05D000236 ORTHO05D000192 3.8e-08 61.2 56 66.1
CiPaw.02G167200 Carya illinoinensis HOM05D000236 ORTHO05D000192 8.5e-08 60.1 63 58.7
TWI14G0710 Tripterygium wilfordii HOM05D000236 ORTHO05D000192 8.5e-08 60.1 63 60.3
MELO3C006186.2 Cucumis melo HOM05D000236 ORTHO05D000192 1.5e-07 59.3 65 55.4
Dinv37751 Davidia involucrata HOM05D000236 ORTHO05D000192 1.9e-07 58.9 64 54.7
Thecc.01G375700 Theobroma cacao HOM05D000236 ORTHO05D000192 2.5e-07 58.5 56 58.9
ClCG05G002200 Citrullus lanatus HOM05D000236 ORTHO05D000192 3.2e-07 58.2 65 55.4
CsaV3_3G009660 Cucumis sativus L. HOM05D000236 ORTHO05D000192 3.2e-07 58.2 65 56.9
CANSAT56G2216 Cannabis sativa HOM05D000236 ORTHO05D000192 4.2e-07 57.8 65 53.8
Sed0019723 Sechium edule HOM05D000236 ORTHO05D000192 1.6e-06 55.8 65 56.9
CSS0041786 Camellia sinensis var. sinensis HOM05D000236 ORTHO05D000192 2.1e-06 55.5 64 53.1
AUR62004217 Chenopodium quinoa HOM05D000236 ORTHO05D000192 2.1e-06 55.5 63 52.4
AUR62013631 Chenopodium quinoa HOM05D000236 ORTHO05D000192 2.1e-06 55.5 63 52.4
Cc02_g36660 Coffea canephora HOM05D000236 ORTHO05D000192 2.7e-06 55.1 66 50.0
Manes.01G265500 Manihot esculenta HOM05D000236 ORTHO05D000192 2.7e-06 55.1 34 76.5
TAR374G1224 Trochodendron aralioides HOM05D000236 ORTHO05D000192 3.6e-06 54.7 53 62.3
CSS0040906 Camellia sinensis var. sinensis HOM05D000236 ORTHO05D000192 4.7e-06 54.3 64 51.6
COL.COLO4_12552 Corchorus olitorius HOM05D000236 ORTHO05D000192 4.7e-06 54.3 56 55.4
Ah.05g174160 Amaranthus hybridus HOM05D000236 ORTHO05D000192 8.0e-06 53.5 63 49.2
Gohir.A08G134300 Gossypium hirsutum HOM05D000236 ORTHO05D000192 8.0e-06 53.5 56 55.4


User provided reference genes

Program Settings