Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G144900 Glycine max HOM05D007247 ORTHO05D009208 9.5e-56 219.9 111 100.0
Glyma.08G281800 Glycine max HOM05D007247 ORTHO05D009208 2.7e-42 175.3 112 86.6
Phvul.003G064700 Phaseolus vulgaris HOM05D007247 ORTHO05D009208 1.4e-27 126.3 105 71.4
VMungo0251G0750 Vigna mungo HOM05D007247 ORTHO05D009208 7.1e-27 124.0 113 67.3
Lj4g0020020 Lotus japonicus HOM05D007247 ORTHO05D009208 4.3e-24 114.8 104 65.4
Psat2g084240 Pisum sativum HOM05D007247 ORTHO05D009208 5.6e-24 114.4 102 61.8
Medtr8g069350 Medicago truncatula HOM05D007247 ORTHO05D009208 8.2e-23 110.5 105 63.8
Ca_22588_v3 Cicer arietinum L. HOM05D007247 ORTHO05D009208 1.8e-22 109.4 112 61.6
Gorai.005G177800 Gossypium raimondii HOM05D007247 ORTHO05D009208 1.7e-20 102.8 96 60.4
Gohir.A03G134800 Gossypium hirsutum HOM05D007247 ORTHO05D009208 4.9e-20 101.3 96 59.4
Gohir.D02G158400 Gossypium hirsutum HOM05D007247 ORTHO05D009208 4.9e-20 101.3 96 59.4
TPR.G38802 Trifolium pratense HOM05D007247 ORTHO05D009208 6.5e-20 100.9 99 57.6
Thecc.02G261000 Theobroma cacao HOM05D007247 ORTHO05D009208 1.1e-19 100.1 95 57.9
Medtr5g032790 Medicago truncatula HOM05D007247 ORTHO05D009208 7.9e-18 94.0 67 71.6
Duzib248G0486 Durio zibethinus HOM05D007247 ORTHO05D009208 1.0e-17 93.6 102 54.9
Psat4g115600 Pisum sativum HOM05D007247 ORTHO05D009208 1.0e-17 93.6 89 61.8
Duzib251G0560 Durio zibethinus HOM05D007247 ORTHO05D009208 1.8e-17 92.8 92 58.7
Lalb_Chr09g0326081 Lupinus albus HOM05D007247 ORTHO05D009208 3.9e-17 91.7 81 60.5
Manes.12G022500 Manihot esculenta HOM05D007247 ORTHO05D009208 5.1e-17 91.3 96 55.2
Potri.008G186200 Populus trichocarpa HOM05D007247 ORTHO05D009208 8.7e-17 90.5 95 52.6
Sabra10G0021600 Salix brachista HOM05D007247 ORTHO05D009208 8.7e-17 90.5 100 51.0
Dinv14726 Davidia involucrata HOM05D007247 ORTHO05D009208 9.7e-16 87.0 61 68.9
TPR.G17749 Trifolium pratense HOM05D007247 ORTHO05D009208 2.2e-15 85.9 74 63.5
COL.COLO4_04829 Corchorus olitorius HOM05D007247 ORTHO05D009208 2.8e-15 85.5 85 57.6
CiPaw.06G067400 Carya illinoinensis HOM05D007247 ORTHO05D009208 3.7e-15 85.1 65 66.2
MSTRG.13349 Avicennia marina HOM05D007247 ORTHO05D009208 6.3e-15 84.3 87 55.2
QL03p057801 Quercus lobata HOM05D007247 ORTHO05D009208 6.3e-15 84.3 100 47.0
Oeu001697.1 Olea europaea HOM05D007247 ORTHO05D009208 8.2e-15 84.0 54 74.1
Potri.010G046700 Populus trichocarpa HOM05D007247 ORTHO05D009208 1.1e-14 83.6 100 49.0
Haze_12254 Corylus avellana HOM05D007247 ORTHO05D009208 1.4e-14 83.2 64 60.9
GSVIVG01005747001 Vitis vinifera HOM05D000233 ORTHO05D000020 1.4e-14 83.2 63 63.5
Cfa009217 Carpinus fangiana HOM05D007247 ORTHO05D009208 2.4e-14 82.4 66 62.1
CARHR026490 Cardamine hirsuta HOM05D007247 ORTHO05D009208 6.9e-14 80.9 60 65.0
CiPaw.05G181400 Carya illinoinensis HOM05D007247 ORTHO05D009208 6.9e-14 80.9 63 66.7
AL1G40330 Arabidopsis lyrata HOM05D007247 ORTHO05D009208 9.0e-14 80.5 54 70.4
Atru.chr11.2143 Acer truncatum HOM05D007247 ORTHO05D009208 1.2e-13 80.1 55 67.3
AT1G67910 Arabidopsis thaliana HOM05D007247 ORTHO05D009208 1.2e-13 80.1 67 62.7
Dinv15222 Davidia involucrata HOM05D007247 ORTHO05D009208 1.2e-13 80.1 100 48.0
Eucgr.H02494 Eucalyptus grandis HOM05D007247 ORTHO05D009208 1.2e-13 80.1 55 67.3
HanXRQChr12g0385811 Helianthus annuus HOM05D007247 ORTHO05D009208 1.2e-13 80.1 67 62.7
Manes.13G023600 Manihot esculenta HOM05D007247 ORTHO05D009208 1.2e-13 80.1 57 68.4
BcaB03g15384 Brassica carinata HOM05D007247 ORTHO05D009208 1.5e-13 79.7 54 70.4
MD13G1100900 Malus domestica HOM05D007247 ORTHO05D009208 1.5e-13 79.7 50 78.0
Prupe.1G245600 Prunus persica HOM05D007247 ORTHO05D009208 1.5e-13 79.7 41 87.8
Sp1g23190 Schrenkiella parvula HOM05D007247 ORTHO05D009208 1.5e-13 79.7 70 58.6
AL2G26710 Arabidopsis lyrata HOM05D007247 ORTHO05D009208 2.0e-13 79.3 59 67.8
A08p26670 Brassica napus HOM05D007247 ORTHO05D009208 2.0e-13 79.3 57 70.2
C03p73320 Brassica napus HOM05D007247 ORTHO05D009208 2.0e-13 79.3 57 70.2
BraA08t34615Z Brassica rapa HOM05D007247 ORTHO05D009208 2.0e-13 79.3 57 70.2
Carub.0002s1440 Capsella rubella HOM05D007247 ORTHO05D009208 2.6e-13 79.0 67 59.7
Cfa009218 Carpinus fangiana HOM05D007247 ORTHO05D009208 2.6e-13 79.0 97 47.4
BcaC08g46018 Brassica carinata HOM05D007247 ORTHO05D009208 3.4e-13 78.6 57 66.7
A07p32290 Brassica napus HOM05D007247 ORTHO05D009208 3.4e-13 78.6 57 66.7
C06p38130 Brassica napus HOM05D007247 ORTHO05D009208 3.4e-13 78.6 57 66.7
BolC6t38910H Brassica oleracea HOM05D007247 ORTHO05D009208 3.4e-13 78.6 57 66.7
BraA07t30854Z Brassica rapa HOM05D007247 ORTHO05D009208 3.4e-13 78.6 57 66.7
Carub.0001s2551 Capsella rubella HOM05D007247 ORTHO05D009208 4.5e-13 78.2 52 69.2
BcaB03g12051 Brassica carinata HOM05D007247 ORTHO05D009208 7.6e-13 77.4 46 76.1
DCAR_026511 Daucus carota HOM05D007247 ORTHO05D009208 7.6e-13 77.4 69 60.9
Thhalv10009220m.g Eutrema salsugineum HOM05D007247 ORTHO05D009208 1.0e-12 77.0 48 72.9
MD16G1101300 Malus domestica HOM05D007247 ORTHO05D009208 1.0e-12 77.0 89 57.3
BcaC01g01656 Brassica carinata HOM05D007247 ORTHO05D009208 1.7e-12 76.3 57 68.4
BolC3t19629H Brassica oleracea HOM05D007247 ORTHO05D009208 1.7e-12 76.3 57 68.4
Aqoxy5G03750 Aquilegia oxysepala HOM05D007247 ORTHO05D009208 2.9e-12 75.5 50 72.0
Hma1.2p1_0079F.1_g041000 Hydrangea macrophylla HOM05D007247 ORTHO05D009208 5.0e-12 74.7 96 45.8
Oeu057538.1 Olea europaea HOM05D007247 ORTHO05D009208 5.0e-12 74.7 90 50.0
THA.LOC104825564 Tarenaya hassleriana HOM05D007247 ORTHO05D009208 5.0e-12 74.7 58 65.5
Actinidia15099 Actinidia chinensis HOM05D000233 ORTHO05D000020 6.5e-12 74.3 57 64.9
Aa31sc790G10 Aethionema arabicum HOM05D007247 ORTHO05D009208 6.5e-12 74.3 52 67.3
Lsat_1_v5_gn_4_4161 Lactuca sativa HOM05D007247 ORTHO05D009208 8.5e-12 73.9 46 76.1
Ciclev10033189m.g Citrus clementina HOM05D007247 ORTHO05D009208 1.1e-11 73.6 67 61.2
HanXRQChr17g0569581 Helianthus annuus HOM05D007247 ORTHO05D009208 1.1e-11 73.6 46 78.3
Lj6E813T0 Lonicera japonica HOM05D007247 ORTHO05D009208 1.1e-11 73.6 82 51.2
Nn4g22599 Nelumbo nucifera HOM05D007247 ORTHO05D009208 1.1e-11 73.6 54 70.4
Rhsim12G0040300 Rhododendron simsii HOM05D007247 ORTHO05D009208 1.1e-11 73.6 60 65.0
Solyc05g013560.3 Solanum lycopersicum HOM05D007247 ORTHO05D009208 1.1e-11 73.6 48 75.0
Peaxi162Scf00128g00216 Petunia axillaris HOM05D007247 ORTHO05D009208 1.9e-11 72.8 61 62.3
Sopen05g008460 Solanum pennellii HOM05D007247 ORTHO05D009208 1.9e-11 72.8 48 75.0
CANSAT01G0364 Cannabis sativa HOM05D007247 ORTHO05D009208 3.2e-11 72.0 77 50.6
Migut.E00205 Erythranthe guttata HOM05D000233 ORTHO05D000020 5.5e-11 71.2 48 70.8
TAR622G0973 Trochodendron aralioides HOM05D007247 ORTHO05D009208 5.5e-11 71.2 45 73.3
unitig_8.g3935 Utricularia gibba HOM05D007247 ORTHO05D009208 7.2e-11 70.9 46 71.7
AT1G24577 Arabidopsis thaliana HOM05D007247 ORTHO05D009208 1.2e-10 70.1 54 61.1
Actinidia01350 Actinidia chinensis HOM05D000233 ORTHO05D000020 1.6e-10 69.7 47 72.3
Actinidia08135 Actinidia chinensis HOM05D007247 ORTHO05D009208 1.6e-10 69.7 47 72.3
Aqoxy3G01230 Aquilegia oxysepala HOM05D007247 ORTHO05D009208 4.6e-10 68.2 50 66.0
CSS0032991 Camellia sinensis var. sinensis HOM05D007247 ORTHO05D009208 4.6e-10 68.2 55 67.3
CSS0043579 Camellia sinensis var. sinensis HOM05D007247 ORTHO05D009208 4.6e-10 68.2 55 67.3
SalBow8G0600 Salvia bowleyana HOM05D007247 ORTHO05D009208 7.9e-10 67.4 50 58.0
Sc04g0009510 Simmondsia chinensis HOM05D007247 ORTHO05D009208 1.0e-09 67.0 61 57.4
AUR62005467 Chenopodium quinoa HOM05D007247 ORTHO05D009208 1.8e-09 66.2 46 69.6
ECA234G3809 Erigeron canadensis HOM05D007247 ORTHO05D009208 3.0e-09 65.5 54 63.0
AUR62024275 Chenopodium quinoa HOM05D007247 ORTHO05D009208 3.9e-09 65.1 46 67.4
ATR0824G192 Amborella trichopoda HOM05D007247 ORTHO05D009208 8.8e-09 63.9 71 59.2
TAR629G1528 Trochodendron aralioides HOM05D007247 ORTHO05D009208 8.8e-09 63.9 53 62.3
EL10Ac6g13820 Beta vulgaris HOM05D007247 ORTHO05D009208 1.5e-08 63.2 45 68.9
FvH4_4g25640 Fragaria vesca HOM05D007247 ORTHO05D009208 1.9e-08 62.8 50 60.0
FAN07G0181 Fragaria x ananassa HOM05D007247 ORTHO05D009208 1.9e-08 62.8 50 60.0
FAN17G2797 Fragaria x ananassa HOM05D007247 ORTHO05D009208 1.9e-08 62.8 50 60.0
FAN22G0007 Fragaria x ananassa HOM05D007247 ORTHO05D009208 1.9e-08 62.8 50 60.0
FAN22G1782 Fragaria x ananassa HOM05D007247 ORTHO05D009208 1.9e-08 62.8 50 60.0
FAN12G2765 Fragaria x ananassa HOM05D007247 ORTHO05D009208 3.3e-08 62.0 50 60.0
TAR636G3092 Trochodendron aralioides HOM05D007247 ORTHO05D009208 9.7e-08 60.5 80 43.8
TAR636G3342 Trochodendron aralioides HOM05D007247 ORTHO05D009208 1.3e-07 60.1 80 43.8
RcHm_v2.0_Chr4g0433081 Rosa chinensis HOM05D007247 ORTHO05D009208 2.2e-07 59.3 45 62.2
PSO063G6114 Papaver somniferum HOM05D007247 ORTHO05D009208 8.2e-07 57.4 59 52.5
Manes.01G003400 Manihot esculenta HOM05D006736 ORTHO05D008459 1.1e-06 57.0 54 57.4
PSO754G0004 Papaver somniferum HOM05D007247 ORTHO05D009208 1.1e-06 57.0 59 52.5
TAR624G0983 Trochodendron aralioides HOM05D006736 ORTHO05D008459 1.4e-06 56.6 48 52.1
DCAR_024425 Daucus carota HOM05D000669 ORTHO05D000679 1.8e-06 56.2 41 65.9
Lsat_1_v5_gn_9_89061 Lactuca sativa HOM05D007247 ORTHO05D009208 1.8e-06 56.2 41 63.4
Rhsim06G0178800 Rhododendron simsii HOM05D006736 ORTHO05D008459 1.8e-06 56.2 40 60.0
Solyc07g045200.1 Solanum lycopersicum HOM05D006736 ORTHO05D008459 3.1e-06 55.5 47 55.3
Sopen07g023750 Solanum pennellii HOM05D006736 ORTHO05D008459 4.1e-06 55.1 47 55.3


User provided reference genes

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