Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G143400 Glycine max HOM05D000684 ORTHO05D020333 3.9e-44 181.0 88 100.0
Manes.03G009801 Manihot esculenta HOM05D004632 ORTHO05D005556 2.1e-21 105.5 82 62.2
MD15G1038900 Malus domestica HOM05D004632 ORTHO05D005556 9.0e-17 90.1 82 54.9
Glyma.14G103600 Glycine max HOM05D004632 ORTHO05D005556 8.5e-15 83.6 84 51.2
Lsat_1_v5_gn_2_114481 Lactuca sativa HOM05D001092 ORTHO05D020333 1.1e-14 83.2 81 50.6
CARHR188970 Cardamine hirsuta HOM05D003913 ORTHO05D020333 8.8e-12 73.6 112 40.2
Cc02_g39010 Coffea canephora HOM05D000684 ORTHO05D000688 3.8e-07 58.2 65 38.5
BcaB05g24152 Brassica carinata HOM05D000684 ORTHO05D000688 5.0e-07 57.8 60 43.3
BcaC04g21108 Brassica carinata HOM05D000684 ORTHO05D000688 5.0e-07 57.8 60 43.3
AL6G45270 Arabidopsis lyrata HOM05D000684 ORTHO05D000688 6.5e-07 57.4 60 41.7
AT4G11110 Arabidopsis thaliana HOM05D000684 ORTHO05D000688 6.5e-07 57.4 60 41.7
Carub.0006s2993 Capsella rubella HOM05D000684 ORTHO05D000688 6.5e-07 57.4 60 41.7
CARHR255480 Cardamine hirsuta HOM05D000684 ORTHO05D000688 6.5e-07 57.4 60 41.7
Thhalv10028383m.g Eutrema salsugineum HOM05D000684 ORTHO05D000688 6.5e-07 57.4 60 41.7
Sp6g06310 Schrenkiella parvula HOM05D000684 ORTHO05D000688 6.5e-07 57.4 60 41.7
THA.LOC104814910 Tarenaya hassleriana HOM05D000684 ORTHO05D000688 8.5e-07 57.0 60 41.7
GSVIVG01019492001 Vitis vinifera HOM05D000684 ORTHO05D000688 1.1e-06 56.6 60 41.7
CSS0001264 Camellia sinensis var. sinensis HOM05D000684 ORTHO05D000688 1.4e-06 56.2 66 40.9
ECA240G3643 Erigeron canadensis HOM05D000684 ORTHO05D000688 1.4e-06 56.2 66 39.4
Hund11408 Selenicereus undatus HOM05D000684 ORTHO05D000688 1.4e-06 56.2 60 41.7
Thecc.07G089800 Theobroma cacao HOM05D000684 ORTHO05D000688 1.4e-06 56.2 59 42.4
BolC9t56397H Brassica oleracea HOM05D000684 ORTHO05D000688 1.9e-06 55.8 71 38.0
Dinv43896 Davidia involucrata HOM05D000684 ORTHO05D000688 1.9e-06 55.8 65 35.4
Duzib205G0698 Durio zibethinus HOM05D000684 ORTHO05D000688 2.5e-06 55.5 61 42.6
HPP92_007625 Vanilla planifolia HOM05D000684 ORTHO05D000688 2.5e-06 55.5 59 42.4
Atru.chr9.2051 Acer truncatum HOM05D000684 ORTHO05D000688 3.2e-06 55.1 60 40.0
Ah.12g052260 Amaranthus hybridus HOM05D000684 ORTHO05D000688 3.2e-06 55.1 60 43.3
Cpa.g.sc122.30 Carica papaya HOM05D000684 ORTHO05D000688 3.2e-06 55.1 60 40.0
Dinv37553 Davidia involucrata HOM05D000684 ORTHO05D000688 3.2e-06 55.1 60 38.3
Gohir.A12G234800 Gossypium hirsutum HOM05D000684 ORTHO05D000688 3.2e-06 55.1 60 40.0
Gohir.D12G235900 Gossypium hirsutum HOM05D000684 ORTHO05D000688 3.2e-06 55.1 60 40.0
Gorai.008G252600 Gossypium raimondii HOM05D000684 ORTHO05D000688 3.2e-06 55.1 60 40.0
Mapoly0100s0059 Marchantia polymorpha HOM05D000684 ORTHO05D000688 3.2e-06 55.1 66 36.4
CSS0011869 Camellia sinensis var. sinensis HOM05D000684 ORTHO05D000688 4.2e-06 54.7 60 38.3
CSS0035979 Camellia sinensis var. sinensis HOM05D000684 ORTHO05D000688 4.2e-06 54.7 60 38.3
Cre12.g526950 Chlamydomonas reinhardtii HOM05D004632 ORTHO05D005556 4.2e-06 54.7 79 35.4
Duzib084G0870 Durio zibethinus HOM05D000684 ORTHO05D000688 4.2e-06 54.7 60 40.0
Lj9C592T5 Lonicera japonica HOM05D000684 ORTHO05D000688 4.2e-06 54.7 72 34.7
Lj3g0014884 Lotus japonicus HOM05D000684 ORTHO05D000688 4.2e-06 54.7 60 40.0
Manes.15G087200 Manihot esculenta HOM05D000684 ORTHO05D000688 4.2e-06 54.7 59 39.0
COL.COLO4_21724 Corchorus olitorius HOM05D000684 ORTHO05D000688 5.5e-06 54.3 60 40.0
Peaxi162Scf00099g01818 Petunia axillaris HOM05D000684 ORTHO05D000688 5.5e-06 54.3 65 36.9
PGSC0003DMG400019379 Solanum tuberosum HOM05D000684 ORTHO05D000688 5.5e-06 54.3 65 38.5
CiPaw.11G124200 Carya illinoinensis HOM05D000684 ORTHO05D000688 7.2e-06 53.9 60 40.0
Ciclev10018610m.g Citrus clementina HOM05D000684 ORTHO05D000688 7.2e-06 53.9 66 34.8
Migut.E01232 Erythranthe guttata HOM05D000684 ORTHO05D000688 7.2e-06 53.9 71 35.2
HanXRQChr10g0292671 Helianthus annuus HOM05D000684 ORTHO05D000688 7.2e-06 53.9 66 37.9
Lsat_1_v5_gn_3_10081 Lactuca sativa HOM05D000684 ORTHO05D000688 7.2e-06 53.9 60 40.0
Manes.03G109800 Manihot esculenta HOM05D000684 ORTHO05D000688 7.2e-06 53.9 64 35.9
Nn3g19084 Nelumbo nucifera HOM05D000684 ORTHO05D000688 7.2e-06 53.9 66 34.8
Nitab4.5_0000522g0110 Nicotiana tabacum HOM05D000684 ORTHO05D000688 7.2e-06 53.9 65 35.4
Os05g0571000 Oryza sativa ssp. japonica HOM05D000684 ORTHO05D000688 7.2e-06 53.9 60 40.0
Potri.014G095300 Populus trichocarpa HOM05D000684 ORTHO05D000688 7.2e-06 53.9 60 38.3
SMO147G0313 Selaginella moellendorffii HOM05D000684 ORTHO05D000688 7.2e-06 53.9 60 43.3
Sc23g0002250 Simmondsia chinensis HOM05D000684 ORTHO05D000688 7.2e-06 53.9 60 40.0
Sc23g0002330 Simmondsia chinensis HOM05D000684 ORTHO05D000688 7.2e-06 53.9 60 40.0
Zm00001eb296410 Zea mays HOM05D000684 ORTHO05D000688 7.2e-06 53.9 60 40.0
Atru.chr5.625 Acer truncatum HOM05D000684 ORTHO05D000688 9.4e-06 53.5 66 36.4
Aqoxy1G01620 Aquilegia oxysepala HOM05D000684 ORTHO05D000688 9.4e-06 53.5 66 39.4
Aqoxy5G04129 Aquilegia oxysepala HOM05D000684 ORTHO05D000688 9.4e-06 53.5 66 39.4
HanXRQChr03g0085121 Helianthus annuus HOM05D000684 ORTHO05D000688 9.4e-06 53.5 66 36.4
Hma1.2p1_2900F.1_g330010 Hydrangea macrophylla HOM05D000684 ORTHO05D000688 9.4e-06 53.5 60 40.0
MBI06_g22399_MAGBIO Magnolia biondii HOM05D000684 ORTHO05D000688 9.4e-06 53.5 60 38.3
TAR374G0912 Trochodendron aralioides HOM05D000684 ORTHO05D000688 9.4e-06 53.5 66 34.8
Zm00001eb344140 Zea mays HOM05D000684 ORTHO05D000688 9.4e-06 53.5 65 35.4


User provided reference genes

Program Settings