Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G143200 Glycine max HOM05D006585 ORTHO05D007798 1.1e-164 583.2 292 100.0
Phvul.003G063800 Phaseolus vulgaris HOM05D006585 ORTHO05D007798 2.9e-136 488.8 298 82.9
VMungo0251G2192 Vigna mungo HOM05D006585 ORTHO05D007798 2.1e-118 429.5 274 79.6
arahy.Tifrunner.gnm1.ann1.I6QGYY Arachis hypogaea HOM05D006585 ORTHO05D007798 2.6e-113 412.5 299 70.9
arahy.Tifrunner.gnm1.ann1.QD46ZG Arachis hypogaea HOM05D006585 ORTHO05D007798 3.2e-111 405.6 299 69.9
Lj4g0008721 Lotus japonicus HOM05D006585 ORTHO05D007798 1.5e-108 396.7 304 69.7
Psat1g023160 Pisum sativum HOM05D006585 ORTHO05D007798 2.4e-106 389.4 300 68.7
Medtr2g079800 Medicago truncatula HOM05D006585 ORTHO05D007798 2.3e-101 372.9 303 67.0
Medtr8g069560 Medicago truncatula HOM05D006585 ORTHO05D007798 1.1e-98 364.0 325 63.1
Ca_22577_v3 Cicer arietinum L. HOM05D006585 ORTHO05D007798 7.5e-92 341.3 281 67.6
QL03p058556 Quercus lobata HOM05D006585 ORTHO05D007798 9.2e-82 307.8 288 59.4
Cfa009198 Carpinus fangiana HOM05D006585 ORTHO05D007798 1.1e-74 284.3 303 54.1
Duzib248G0505 Durio zibethinus HOM05D006585 ORTHO05D007798 1.5e-71 273.9 305 52.5
Lalb_Chr16g0392221 Lupinus albus HOM05D006585 ORTHO05D007798 8.0e-70 268.1 209 67.0
Thecc.02G257200 Theobroma cacao HOM05D006585 ORTHO05D007798 1.8e-69 266.9 314 47.1
RcHm_v2.0_Chr4g0433351 Rosa chinensis HOM05D006585 ORTHO05D007798 2.4e-66 256.5 326 45.7
TWI36G0027 Tripterygium wilfordii HOM05D006585 ORTHO05D007798 3.2e-66 256.1 283 52.3
CiPaw.05G183700 Carya illinoinensis HOM05D006585 ORTHO05D007798 1.6e-65 253.8 299 51.2
Potri.010G044800 Populus trichocarpa HOM05D006585 ORTHO05D007798 1.6e-65 253.8 304 50.3
CANSAT01G1755 Cannabis sativa HOM05D006585 ORTHO05D007798 3.0e-64 249.6 329 45.6
ClCG08G017740 Citrullus lanatus HOM05D006585 ORTHO05D007798 3.9e-64 249.2 307 45.6
Gorai.005G179800 Gossypium raimondii HOM05D006585 ORTHO05D007798 8.6e-64 248.1 304 47.4
Sed0016045 Sechium edule HOM05D006585 ORTHO05D007798 7.3e-63 245.0 293 45.7
COL.COLO4_24245 Corchorus olitorius HOM05D006585 ORTHO05D002520 2.8e-62 243.0 285 48.1
Gohir.A03G136500 Gossypium hirsutum HOM05D006585 ORTHO05D007798 3.6e-62 242.7 283 48.4
Prupe.1G247500 Prunus persica HOM05D006585 ORTHO05D007798 8.1e-62 241.5 347 41.5
Dinv24805 Davidia involucrata HOM05D006585 ORTHO05D007798 6.8e-61 238.4 302 46.7
MD13G1097800 Malus domestica HOM05D006585 ORTHO05D007798 1.5e-60 237.3 332 44.3
TAR371G0523 Trochodendron aralioides HOM05D006585 ORTHO05D007798 4.4e-60 235.7 296 47.6
FvH4_4g25900 Fragaria vesca HOM05D006585 ORTHO05D007798 1.3e-59 234.2 329 42.9
TWI75G0333 Tripterygium wilfordii HOM05D006585 ORTHO05D007798 3.7e-59 232.6 298 47.3
Sabra10G0023300 Salix brachista HOM05D000740 ORTHO05D003236 2.4e-58 229.9 332 44.6
Prupe.1G247600 Prunus persica HOM05D006585 ORTHO05D007798 5.4e-58 228.8 283 48.1
FAN17G2552 Fragaria x ananassa HOM05D006585 ORTHO05D007798 1.6e-57 227.3 340 41.2
THA.LOC104823651 Tarenaya hassleriana HOM05D006585 ORTHO05D007798 6.0e-57 225.3 300 44.7
Cpa.g.sc33.3 Carica papaya HOM05D006585 ORTHO05D007798 1.3e-56 224.2 291 46.4
GSVIVG01004087001 Vitis vinifera HOM05D006585 ORTHO05D007798 2.3e-56 223.4 300 48.3
MD13G1097900 Malus domestica HOM05D006585 ORTHO05D007798 1.1e-55 221.1 322 41.9
Manes.13G025900 Manihot esculenta HOM05D006585 ORTHO05D007798 1.5e-55 220.7 284 49.6
TPR.G34666 Trifolium pratense HOM05D006585 ORTHO05D007798 3.3e-55 219.5 168 69.6
Ciclev10033875m.g Citrus clementina HOM05D006585 ORTHO05D007798 9.5e-55 218.0 305 47.2
Lj6C811T17 Lonicera japonica HOM05D006585 ORTHO05D007798 1.1e-53 214.5 310 46.5
Aqoxy5G03808 Aquilegia oxysepala HOM05D006585 ORTHO05D007798 8.9e-53 211.5 305 43.9
Actinidia27800 Actinidia chinensis HOM05D006585 ORTHO05D007798 4.4e-52 209.1 338 42.0
FAN12G1097 Fragaria x ananassa HOM05D006585 ORTHO05D007798 7.6e-52 208.4 320 40.3
FAN12G1379 Fragaria x ananassa HOM05D006585 ORTHO05D007798 7.6e-52 208.4 320 40.3
Gohir.D02G159700 Gossypium hirsutum HOM05D006585 ORTHO05D007798 1.0e-48 198.0 251 43.8
Glyma.08G283200 Glycine max HOM05D006585 ORTHO05D007798 1.3e-48 197.6 176 65.9
Sopen05g008150 Solanum pennellii HOM05D006585 ORTHO05D007798 2.3e-48 196.8 294 42.9
DCAR_031138 Daucus carota HOM05D006585 ORTHO05D007798 3.0e-48 196.4 309 40.8
Dinv20613 Davidia involucrata HOM05D006585 ORTHO05D007798 5.6e-47 192.2 286 42.3
Thhalv10007956m.g Eutrema salsugineum HOM05D006585 ORTHO05D007798 8.1e-46 188.3 375 34.4
Oeu049180.1 Olea europaea HOM05D006585 ORTHO05D007798 8.1e-46 188.3 313 39.6
Carub.0001s1022 Capsella rubella HOM05D006585 ORTHO05D007798 2.4e-45 186.8 359 37.0
Sp1g09410 Schrenkiella parvula HOM05D006585 ORTHO05D007798 2.0e-44 183.7 340 36.5
Nn3g16750 Nelumbo nucifera HOM05D006585 ORTHO05D007798 2.6e-44 183.3 285 43.2
MBI10_g00733_MAGBIO Magnolia biondii HOM05D006585 ORTHO05D007798 3.4e-44 183.0 286 39.5
AT1G10710 Arabidopsis thaliana HOM05D006585 ORTHO05D007798 4.4e-44 182.6 346 34.7
AL1G21590 Arabidopsis lyrata HOM05D006585 ORTHO05D007798 5.8e-44 182.2 352 34.9
Nitab4.5_0002255g0100 Nicotiana tabacum HOM05D006585 ORTHO05D007798 9.9e-44 181.4 273 42.5
MBI16_g23844_MAGBIO Magnolia biondii HOM05D006585 ORTHO05D007798 2.2e-43 180.3 303 41.3
Peaxi162Scf00128g00033 Petunia axillaris HOM05D006585 ORTHO05D007798 7.1e-42 175.3 290 40.7
Solyc05g013360.3 Solanum lycopersicum HOM05D006585 ORTHO05D007798 7.1e-42 175.3 275 40.4
Sc04g0009420 Simmondsia chinensis HOM05D006585 ORTHO05D007798 1.9e-39 167.2 291 38.1
BcaC07g41800 Brassica carinata HOM05D006585 ORTHO05D007798 4.3e-39 166.0 355 33.0
GSVIVG01007676001 Vitis vinifera HOM05D006585 ORTHO05D007798 7.3e-39 165.2 297 35.7
CARHR010890 Cardamine hirsuta HOM05D006585 ORTHO05D007798 2.1e-38 163.7 340 34.1
HanXRQChr17g0539731 Helianthus annuus HOM05D006585 ORTHO05D007798 2.8e-38 163.3 290 38.3
BcaB08g37368 Brassica carinata HOM05D006585 ORTHO05D007798 8.1e-38 161.8 404 30.7
Haze_12236 Corylus avellana HOM05D006585 ORTHO05D007798 1.8e-37 160.6 212 49.1
Nitab4.5_0002552g0050 Nicotiana tabacum HOM05D006585 ORTHO05D007798 2.4e-37 160.2 271 38.4
BraA09t41832Z Brassica rapa HOM05D006585 ORTHO05D007798 6.9e-37 158.7 382 31.7
C08p48610 Brassica napus HOM05D006585 ORTHO05D007798 1.2e-36 157.9 375 31.7
Lsat_1_v5_gn_3_28841 Lactuca sativa HOM05D006585 ORTHO05D007798 1.3e-35 154.5 304 35.2
EL10Ac6g13783 Beta vulgaris HOM05D006585 ORTHO05D007798 2.9e-35 153.3 321 35.5
TAR629G0056 Trochodendron aralioides HOM05D006585 ORTHO05D007798 4.9e-35 152.5 244 42.6
Aa31LG1G4120 Aethionema arabicum HOM05D006585 ORTHO05D007798 1.4e-34 151.0 290 34.8
FAN07G1571 Fragaria x ananassa HOM05D006585 ORTHO05D007798 1.4e-34 151.0 154 50.0
SGA_v2.0_scaffold63G21726 Striga asiatica HOM05D006585 ORTHO05D007798 2.4e-34 150.2 305 33.1
BolC8t52400H Brassica oleracea HOM05D006585 ORTHO05D007798 7.9e-33 145.2 422 29.1
COL.COLO4_30156 Corchorus olitorius HOM05D006585 ORTHO05D007798 1.3e-32 144.4 276 37.7
AUR62024297 Chenopodium quinoa HOM05D006585 ORTHO05D007798 3.0e-32 143.3 296 35.8
Cc11_g15560 Coffea canephora HOM05D006585 ORTHO05D007798 6.7e-32 142.1 316 36.4
FAN22G0568 Fragaria x ananassa HOM05D006585 ORTHO05D007798 6.7e-32 142.1 169 46.2
Ah.03g133160 Amaranthus hybridus HOM05D006585 ORTHO05D007798 1.1e-31 141.4 291 34.7
A09p64570 Brassica napus HOM05D006585 ORTHO05D007798 2.8e-30 136.7 391 29.2
ECA246G2324 Erigeron canadensis HOM05D000225 ORTHO05D002520 1.1e-29 134.8 267 36.3
ATR1154G038 Amborella trichopoda HOM05D006585 ORTHO05D007798 1.2e-28 131.3 289 37.0
SGA_v2.0_scaffold87G27084 Striga asiatica HOM05D006585 ORTHO05D007798 1.2e-28 131.3 304 29.9
Migut.E00193 Erythranthe guttata HOM05D006585 ORTHO05D007798 7.6e-28 128.6 234 35.5
PGR119G1584 Punica granatum HOM05D006585 ORTHO05D007798 4.9e-27 125.9 308 33.1
Zm00001eb382430 Zea mays HOM05D006585 ORTHO05D007798 4.9e-27 125.9 337 30.9
Rhsim12G0041300 Rhododendron simsii HOM05D006585 ORTHO05D007798 5.6e-23 112.5 423 29.6
ATR1154G026 Amborella trichopoda HOM05D006585 ORTHO05D007798 3.7e-22 109.8 240 35.4
Actinidia08143 Actinidia chinensis HOM05D006585 ORTHO05D007798 1.2e-20 104.8 349 30.4
CSS0026295 Camellia sinensis var. sinensis HOM05D006585 ORTHO05D007798 1.3e-19 101.3 120 45.0
Glyma.08G283250 Glycine max HOM05D006585 ORTHO05D007798 1.1e-18 98.2 60 75.0
Thecc.03G022200 Theobroma cacao HOM05D006585 ORTHO05D007798 1.1e-18 98.2 230 33.9
Atru.chr11.2134 Acer truncatum HOM05D006585 ORTHO05D007798 2.5e-18 97.1 129 45.7
Lalb_Chr16g0392231 Lupinus albus HOM05D006585 ORTHO05D007798 1.2e-17 94.7 93 57.0
Atru.chr11.2118 Acer truncatum HOM05D006585 ORTHO05D007798 2.1e-17 94.0 129 45.0
HPP92_008331 Vanilla planifolia HOM05D006585 ORTHO05D007798 1.3e-16 91.3 135 39.3
PSO832G3049 Papaver somniferum HOM05D000629 ORTHO05D007798 2.3e-16 90.5 149 36.2
PSO063G7660 Papaver somniferum HOM05D000629 ORTHO05D007798 3.9e-16 89.7 202 31.2
HPP92_008334 Vanilla planifolia HOM05D034240 ORTHO05D007798 6.7e-16 89.0 205 31.7
Oeu056719.1 Olea europaea HOM05D006585 ORTHO05D007798 1.1e-15 88.2 170 37.6
SalBow8G1297 Salvia bowleyana HOM05D006585 ORTHO05D007798 1.9e-15 87.4 137 38.7
SHI17754 Sapria himalayana HOM05D006585 ORTHO05D007798 2.5e-15 87.0 217 29.0
Cc04_g11830 Coffea canephora HOM05D006585 ORTHO05D007798 9.0e-13 78.6 110 43.6
PSO832G2940 Papaver somniferum HOM05D006585 ORTHO05D007798 7.6e-12 75.5 102 41.2
EL10Ac5g10683 Beta vulgaris HOM05D006585 ORTHO05D007798 1.0e-11 75.1 112 39.3
SGA_v2.0_scaffold779G53588 Striga asiatica HOM05D006585 ORTHO05D007798 1.3e-11 74.7 95 37.9
PSO063G0496 Papaver somniferum HOM05D006585 ORTHO05D007798 1.7e-11 74.3 327 28.4
SalBow8G2270 Salvia bowleyana HOM05D006585 ORTHO05D007798 2.2e-11 73.9 193 31.1
SGA_v2.0_scaffold34G13586 Striga asiatica HOM05D006585 ORTHO05D007798 2.2e-11 73.9 95 37.9
SEGI_25539 Sequoiadendron giganteum HOM05D006585 ORTHO05D007798 6.5e-11 72.4 134 34.3
SHI17755 Sapria himalayana HOM05D006585 ORTHO05D007798 7.2e-10 68.9 164 34.8
CDE06G0796 Ceratophyllum demersum HOM05D006585 ORTHO05D007798 2.2e-06 57.4 69 46.4
AUR62005444 Chenopodium quinoa HOM05D006585 ORTHO05D007798 2.8e-06 57.0 217 31.3


User provided reference genes

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