Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G133800 Glycine max HOM05D005184 ORTHO05D006222 4.9e-97 357.8 187 100.0
Glyma.08G290400 Glycine max HOM05D005184 ORTHO05D006222 1.4e-96 356.3 187 96.3
Phvul.003G054400 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 1.8e-86 322.8 187 87.2
VMungo0251G1371 Vigna mungo HOM05D005184 ORTHO05D006222 6.7e-86 320.9 185 86.5
arahy.Tifrunner.gnm1.ann1.GIV1JF Arachis hypogaea HOM05D005184 ORTHO05D006222 1.3e-84 316.6 181 89.5
Ca_22770_v3 Cicer arietinum L. HOM05D005184 ORTHO05D006222 2.6e-82 308.9 187 83.4
Lj4g0016473 Lotus japonicus HOM05D005184 ORTHO05D006222 8.5e-81 303.9 172 87.2
Lalb_Chr11g0071121 Lupinus albus HOM05D005184 ORTHO05D006222 8.5e-81 303.9 187 82.4
Medtr8g063230 Medicago truncatula HOM05D005184 ORTHO05D006222 4.2e-80 301.6 176 85.2
arahy.Tifrunner.gnm1.ann1.G4BVC6 Arachis hypogaea HOM05D005184 ORTHO05D006222 7.4e-77 290.8 240 67.5
TPR.G32980 Trifolium pratense HOM05D005184 ORTHO05D006222 3.1e-75 285.4 171 83.0
CiPaw.05G149300 Carya illinoinensis HOM05D005184 ORTHO05D006222 1.9e-72 276.2 173 79.8
Manes.01G197300 Manihot esculenta HOM05D005184 ORTHO05D006222 4.2e-72 275.0 183 74.9
Cfa009129 Carpinus fangiana HOM05D005184 ORTHO05D006222 5.5e-72 274.6 173 79.2
PGR119G0379 Punica granatum HOM05D005184 ORTHO05D006222 5.5e-72 274.6 168 80.4
Atru.chr11.1971 Acer truncatum HOM05D005184 ORTHO05D006222 1.6e-71 273.1 172 78.5
COL.COLO4_19542 Corchorus olitorius HOM05D005184 ORTHO05D006222 4.7e-71 271.6 170 79.4
Potri.008G146200 Populus trichocarpa HOM05D005184 ORTHO05D006222 2.3e-70 269.2 185 73.0
Thecc.02G243600 Theobroma cacao HOM05D005184 ORTHO05D006222 3.0e-70 268.9 170 78.2
Ciclev10032867m.g Citrus clementina HOM05D005184 ORTHO05D006222 8.8e-70 267.3 170 78.8
TAR374G1061 Trochodendron aralioides HOM05D005184 ORTHO05D006222 8.8e-70 267.3 173 75.1
Lsat_1_v5_gn_4_6340 Lactuca sativa HOM05D005184 ORTHO05D006222 2.0e-69 266.2 173 76.3
CsaV3_5G031800 Cucumis sativus L. HOM05D005184 ORTHO05D006222 2.6e-69 265.8 173 75.7
HanXRQChr04g0103681 Helianthus annuus HOM05D005184 ORTHO05D006222 2.6e-69 265.8 173 75.7
Potri.010G095601 Populus trichocarpa HOM05D005184 ORTHO05D006222 4.4e-69 265.0 183 72.7
Duzib268G0446 Durio zibethinus HOM05D005184 ORTHO05D006222 5.7e-69 264.6 170 76.5
Nn4g22873 Nelumbo nucifera HOM05D005184 ORTHO05D006222 5.7e-69 264.6 170 76.5
FvH4_4g34930 Fragaria vesca HOM05D005184 ORTHO05D006222 9.7e-69 263.8 171 74.3
MELO3C012019.2 Cucumis melo HOM05D005184 ORTHO05D006222 1.3e-68 263.5 165 79.4
Gohir.D01G129700 Gossypium hirsutum HOM05D005184 ORTHO05D006222 3.7e-68 261.9 170 75.9
Sabra10G0068200 Salix brachista HOM05D005184 ORTHO05D006222 3.7e-68 261.9 188 71.3
CANSAT01G1514 Cannabis sativa HOM05D005184 ORTHO05D006222 4.8e-68 261.5 173 75.1
Gohir.A01G139200 Gossypium hirsutum HOM05D005184 ORTHO05D006222 1.4e-67 260.0 170 75.3
Cpa.g.sc5.359 Carica papaya HOM05D005184 ORTHO05D006222 2.4e-67 259.2 172 75.0
Actinidia27771 Actinidia chinensis HOM05D005184 ORTHO05D006222 4.1e-67 258.5 170 75.3
Psat4g125480 Pisum sativum HOM05D005184 ORTHO05D006222 4.1e-67 258.5 170 78.2
ECA234G0428 Erigeron canadensis HOM05D005184 ORTHO05D003386 9.1e-67 257.3 168 75.6
Aqoxy3G03072 Aquilegia oxysepala HOM05D005184 ORTHO05D006222 4.5e-66 255.0 169 72.8
MSTRG.614 Avicennia marina HOM05D005184 ORTHO05D006222 7.7e-66 254.2 173 73.4
Cc11_g14330 Coffea canephora HOM05D005184 ORTHO05D006222 1.3e-65 253.4 180 72.2
Migut.E00145 Erythranthe guttata HOM05D005184 ORTHO05D006222 1.3e-65 253.4 173 71.7
RcHm_v2.0_Chr5g0030111 Rosa chinensis HOM05D005184 ORTHO05D006222 2.2e-65 252.7 175 71.4
Oeu040755.2 Olea europaea HOM05D005184 ORTHO05D006222 1.5e-64 250.0 173 69.9
MD13G1087800 Malus domestica HOM05D005184 ORTHO05D006222 4.2e-64 248.4 181 67.4
Rhsim12G0048500 Rhododendron simsii HOM05D005184 ORTHO05D006222 5.5e-64 248.1 188 69.1
Medtr8g461280 Medicago truncatula HOM05D005184 ORTHO05D006222 9.4e-64 247.3 167 74.3
TWI18G1303 Tripterygium wilfordii HOM05D005184 ORTHO05D006222 1.6e-63 246.5 166 72.9
PSO478G1620 Papaver somniferum HOM05D005184 ORTHO05D006222 2.7e-63 245.7 165 71.5
ClCG05G025100 Citrullus lanatus HOM05D005184 ORTHO05D006222 3.6e-63 245.4 159 76.1
Eucgr.B02549 Eucalyptus grandis HOM05D005184 ORTHO05D006222 3.6e-63 245.4 168 72.6
Oeu039485.1 Olea europaea HOM05D005184 ORTHO05D006222 4.7e-63 245.0 172 70.3
Gorai.002G161300 Gossypium raimondii HOM05D005184 ORTHO05D006222 8.0e-63 244.2 205 62.9
PSO017G3562 Papaver somniferum HOM05D005184 ORTHO05D006222 8.0e-63 244.2 165 70.9
MD16G1088100 Malus domestica HOM05D005184 ORTHO05D006222 4.0e-62 241.9 173 68.8
CSS0049337 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 8.8e-62 240.7 171 70.8
Haze_12160 Corylus avellana HOM05D005184 ORTHO05D006222 1.7e-60 236.5 173 71.1
Os02g0741900 Oryza sativa ssp. japonica HOM05D005184 ORTHO05D006222 4.8e-60 235.0 187 64.2
Sc04g0008930 Simmondsia chinensis HOM05D005184 ORTHO05D006222 1.4e-59 233.4 170 70.6
CSS0034024 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 5.3e-59 231.5 170 68.8
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 5.3e-59 231.5 187 64.2
Mapoly0065s0085 Marchantia polymorpha HOM05D005184 ORTHO05D006222 7.0e-59 231.1 170 65.3
Zm00001eb254250 Zea mays HOM05D005184 ORTHO05D006222 4.5e-58 228.4 174 65.5
Zm00001eb194690 Zea mays HOM05D005184 ORTHO05D006222 5.9e-58 228.0 174 65.5
FAN12G2936 Fragaria x ananassa HOM05D005184 ORTHO05D006222 2.2e-57 226.1 171 66.7
FAN17G0007 Fragaria x ananassa HOM05D005184 ORTHO05D006222 1.5e-56 223.4 171 66.1
FAN22G1244 Fragaria x ananassa HOM05D005184 ORTHO05D006222 1.5e-56 223.4 171 66.1
FAN07G0314 Fragaria x ananassa HOM05D005184 ORTHO05D006222 1.9e-56 223.0 171 65.5
DCAR_007099 Daucus carota HOM05D005184 ORTHO05D006222 4.2e-56 221.9 177 67.8
CSS0002866 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.1e-55 219.5 159 68.6
CSS0033197 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 3.0e-54 215.7 169 65.1
TAR622G1169 Trochodendron aralioides HOM05D005184 ORTHO05D006222 3.0e-54 215.7 158 70.9
GSVIVG01020163001 Vitis vinifera HOM05D005184 ORTHO05D006222 6.8e-54 214.5 136 78.7
CSS0009826 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.2e-53 213.8 157 68.2
unitig_749.g13268 Utricularia gibba HOM05D005184 ORTHO05D006222 4.4e-53 211.8 187 59.4
SGA_v2.0_scaffold166G38348 Striga asiatica HOM05D005184 ORTHO05D006222 1.3e-52 210.3 144 73.6
HPP92_015265 Vanilla planifolia HOM05D000076 ORTHO05D002949 2.2e-52 209.5 182 61.0
Phvul.003G054101 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 8.3e-52 207.6 129 81.4
CBR_g30806 Chara braunii HOM05D005184 ORTHO05D006222 1.4e-51 206.8 169 59.2
CBR_g30798 Chara braunii HOM05D005184 ORTHO05D006222 2.4e-51 206.1 169 59.2
AUR62005318 Chenopodium quinoa HOM05D005184 ORTHO05D006222 3.5e-50 202.2 137 74.5
CDE06G1803 Ceratophyllum demersum HOM05D005184 ORTHO05D006222 4.5e-50 201.8 166 62.7
Pp3c1_7410 Physcomitrium patens HOM05D005184 ORTHO05D006222 4.5e-50 201.8 167 59.9
Lj3A1049G57 Lonicera japonica HOM05D005184 ORTHO05D006222 5.9e-50 201.4 128 78.9
RcHm_v2.0_Chr3g0467191 Rosa chinensis HOM05D005184 ORTHO05D006222 7.7e-50 201.1 162 62.3
RcHm_v2.0_Chr1g0347741 Rosa chinensis HOM05D005184 ORTHO05D006222 6.5e-49 198.0 138 69.6
Carub.0001s2347 Capsella rubella HOM05D005184 ORTHO05D006222 7.2e-48 194.5 169 57.4
THA.LOC104822060 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 1.2e-47 193.7 169 55.6
Aa31LG7G7840 Aethionema arabicum HOM05D005184 ORTHO05D006222 8.0e-47 191.0 169 56.8
ATR1149G050 Amborella trichopoda HOM05D005184 ORTHO05D006222 3.0e-46 189.1 127 73.2
THA.LOC104808902 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 5.2e-46 188.3 168 56.0
AagrBONN_evm.TU.Sc2ySwM_344.3206 Anthoceros agrestis HOM05D005184 ORTHO05D006222 2.0e-45 186.4 157 56.1
Sp1g21380 Schrenkiella parvula HOM05D005184 ORTHO05D006222 2.0e-45 186.4 169 55.0
AL1G37810 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 3.4e-45 185.7 169 55.0
SMO117G0191 Selaginella moellendorffii HOM05D005184 ORTHO05D006222 5.7e-45 184.9 169 56.8
AT1G24050 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 1.7e-44 183.3 169 54.4
RcHm_v2.0_Chr2g0143691 Rosa chinensis HOM05D005184 ORTHO05D006222 1.7e-44 183.3 138 66.7
Nitab4.5_0000031g0060 Nicotiana tabacum HOM05D005184 ORTHO05D006222 8.3e-44 181.0 197 53.8
Hund05960 Selenicereus undatus HOM05D005184 ORTHO05D006222 3.1e-43 179.1 122 73.0
Sed0020204 Sechium edule HOM05D005184 ORTHO05D006222 1.2e-42 177.2 119 72.3
BcaC05g26302 Brassica carinata HOM05D005184 ORTHO05D006222 1.6e-42 176.8 172 52.9
BolC5t31020H Brassica oleracea HOM05D005184 ORTHO05D006222 3.8e-41 172.2 173 52.6
C07p20080 Brassica napus HOM05D005184 ORTHO05D006222 5.0e-41 171.8 169 52.7
BolC7t42528H Brassica oleracea HOM05D005184 ORTHO05D006222 5.0e-41 171.8 169 52.7
Thhalv10009785m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 6.6e-41 171.4 169 53.3
BraA07t29118Z Brassica rapa HOM05D005184 ORTHO05D006222 8.6e-41 171.0 169 52.7
RcHm_v2.0_Chr4g0444381 Rosa chinensis HOM05D005184 ORTHO05D006222 1.1e-40 170.6 111 75.7
RcHm_v2.0_Chr7g0224821 Rosa chinensis HOM05D005184 ORTHO05D006222 1.1e-40 170.6 117 69.2
BcaB07g32379 Brassica carinata HOM05D005184 ORTHO05D006222 4.3e-40 168.7 169 52.7
BraA09t39575Z Brassica rapa HOM05D005184 ORTHO05D006222 1.2e-39 167.2 173 51.4
Duzib248G0500 Durio zibethinus HOM05D005184 ORTHO05D006222 6.1e-39 164.9 134 64.9
C05p23190 Brassica napus HOM05D001690 ORTHO05D009096 8.9e-38 161.0 164 52.4
A09p40800 Brassica napus HOM05D001690 ORTHO05D009096 1.3e-36 157.1 164 51.2
Pp3c7_23840 Physcomitrium patens HOM05D005184 ORTHO05D006222 1.4e-35 153.7 133 58.6
AL2G29520 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 1.6e-34 150.2 169 46.7
BraA02t06699Z Brassica rapa HOM05D005184 ORTHO05D006222 1.3e-33 147.1 171 45.0
BcaB03g14122 Brassica carinata HOM05D005184 ORTHO05D006222 3.0e-33 146.0 119 59.7
Sp5g25350 Schrenkiella parvula HOM05D005184 ORTHO05D006222 3.0e-33 146.0 176 43.2
Prupe.1G258500 Prunus persica HOM05D005184 ORTHO05D006222 8.6e-33 144.4 118 61.0
Carub.0002s1692 Capsella rubella HOM05D005184 ORTHO05D006222 1.1e-32 144.1 171 47.4
A02p16400 Brassica napus HOM05D005184 ORTHO05D006222 4.3e-32 142.1 189 40.7
CSS0000441 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 9.5e-32 141.0 116 61.2
BcaC03g15168 Brassica carinata HOM05D005184 ORTHO05D006222 4.7e-31 138.7 175 44.6
Thhalv10019170m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 8.0e-31 137.9 181 43.6
AT1G70220 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 2.3e-30 136.3 169 42.6
EL10Ac6g13619 Beta vulgaris HOM05D005184 ORTHO05D006222 4.0e-30 135.6 158 49.4
C02p27410 Brassica napus HOM05D005184 ORTHO05D006222 4.0e-30 135.6 175 44.0
BolC2t08801H Brassica oleracea HOM05D005184 ORTHO05D006222 4.0e-30 135.6 175 44.0
CARHR024350 Cardamine hirsuta HOM05D005184 ORTHO05D006222 1.2e-29 134.0 136 50.7
Cc02_g24860 Coffea canephora HOM05D005184 ORTHO05D006222 1.3e-28 130.6 163 47.9
CARHR063340 Cardamine hirsuta HOM05D005184 ORTHO05D006222 2.4e-27 126.3 174 40.8
BcaC06g35075 Brassica carinata HOM05D005184 ORTHO05D006222 5.4e-27 125.2 136 47.8
vmacro22616 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 1.9e-24 116.7 78 71.8
Cre10.g421850 Chlamydomonas reinhardtii HOM05D005184 ORTHO05D006222 9.5e-24 114.4 165 38.2
BcaB05g24540 Brassica carinata HOM05D005184 ORTHO05D006222 3.4e-21 105.9 122 48.4
Cc00_g31660 Coffea canephora HOM05D005184 ORTHO05D006222 6.4e-20 101.7 123 49.6
MCO16G256 Micromonas commoda HOM05D005184 ORTHO05D006222 1.9e-19 100.1 154 37.7
A07p13470 Brassica napus HOM05D005184 ORTHO05D006222 4.6e-18 95.5 160 35.6
Solyc04g025670.4 Solanum lycopersicum HOM05D005184 ORTHO05D006222 1.7e-17 93.6 55 81.8
Prupe.1G258600 Prunus persica HOM05D005184 ORTHO05D006222 2.3e-17 93.2 55 83.6
QL03p062286 Quercus lobata HOM05D005184 ORTHO05D006222 6.6e-17 91.7 64 75.0
Nitab4.5_0000925g0110 Nicotiana tabacum HOM05D005184 ORTHO05D006222 1.1e-16 90.9 55 81.8
vmacro22617 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 3.3e-16 89.4 52 84.6
BcaB02g09680 Brassica carinata HOM05D000630 ORTHO05D014858 9.5e-16 87.8 90 51.1
PRCOL_00005775 Prasinoderma coloniale HOM05D005184 ORTHO05D006222 5.2e-14 82.0 98 49.0
Cc00_g05590 Coffea canephora HOM05D005184 ORTHO05D006222 2.0e-13 80.1 76 55.3
CSS0046251 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.6e-13 79.7 52 75.0
Peaxi162Scf00792g00021 Petunia axillaris HOM05D005184 ORTHO05D006222 1.7e-12 77.0 41 90.2
Cc00_g11840 Coffea canephora HOM05D001087 ORTHO05D006222 9.2e-11 71.2 67 56.7
RcHm_v2.0_Chr4g0444371 Rosa chinensis HOM05D005184 ORTHO05D006222 3.0e-09 66.2 35 80.0
BolC5t28869H Brassica oleracea HOM05D000630 ORTHO05D014858 2.5e-08 63.2 64 48.4
Cfa024934 Carpinus fangiana HOM05D006964 ORTHO05D008861 1.1e-06 57.8 118 35.6


User provided reference genes

Program Settings