Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G132600 Glycine max HOM05D000274 ORTHO05D002552 1.7e-31 138.7 67 100.0
BraSC58t46495Z Brassica rapa HOM05D000274 ORTHO05D002552 4.6e-21 104.0 69 79.7
Oeu028774.1 Olea europaea HOM05D000274 ORTHO05D002552 4.6e-21 104.0 66 75.8
BolSC29t60479H Brassica oleracea HOM05D000274 ORTHO05D002552 2.2e-15 85.1 66 68.2
BraSC103t45453Z Brassica rapa HOM05D000274 ORTHO05D002552 8.4e-15 83.2 50 84.0
PSO548G0031 Papaver somniferum HOM05D000274 ORTHO05D002552 3.9e-12 74.3 41 85.4
ATCG00670 Arabidopsis thaliana HOM05D000274 ORTHO05D002552 5.1e-12 73.9 39 92.3
arahy.Tifrunner.gnm1.ann1.002YPW Arachis hypogaea HOM05D000274 ORTHO05D002552 5.1e-12 73.9 39 92.3
arahy.Tifrunner.gnm1.ann1.3I6E4U Arachis hypogaea HOM05D000274 ORTHO05D002552 5.1e-12 73.9 39 92.3
arahy.Tifrunner.gnm1.ann1.8S8FMR Arachis hypogaea HOM05D000274 ORTHO05D002552 5.1e-12 73.9 39 92.3
arahy.Tifrunner.gnm1.ann1.JE9GG4 Arachis hypogaea HOM05D000274 ORTHO05D002552 5.1e-12 73.9 39 92.3
arahy.Tifrunner.gnm1.ann1.KX9QRC Arachis hypogaea HOM05D000274 ORTHO05D002552 5.1e-12 73.9 39 92.3
CARHR282180 Cardamine hirsuta HOM05D000274 ORTHO05D002552 5.1e-12 73.9 39 92.3
Cfa021574 Carpinus fangiana HOM05D000274 ORTHO05D002552 5.1e-12 73.9 39 92.3
DCAR_032510 Daucus carota HOM05D000274 ORTHO05D002552 5.1e-12 73.9 40 87.5
LjContig00318g0024179 Lotus japonicus HOM05D000274 ORTHO05D002552 5.1e-12 73.9 39 92.3
RcHm_v2.0_CPg0501991 Rosa chinensis HOM05D000274 ORTHO05D002552 5.1e-12 73.9 39 89.7
Phvul.002G090301 Phaseolus vulgaris HOM05D000274 ORTHO05D002552 8.7e-12 73.2 39 92.3
Sc02g0004580 Simmondsia chinensis HOM05D000274 ORTHO05D002552 8.7e-12 73.2 39 89.7
Sc24g0000880 Simmondsia chinensis HOM05D000274 ORTHO05D002552 8.7e-12 73.2 39 89.7
AL2G21640 Arabidopsis lyrata HOM05D000274 ORTHO05D002552 1.1e-11 72.8 39 89.7
Lalb_Chr07g0192041 Lupinus albus HOM05D000274 ORTHO05D002552 1.1e-11 72.8 39 89.7
EL10Ac5g13040 Beta vulgaris HOM05D000274 ORTHO05D002552 1.5e-11 72.4 39 87.2
EL10As12g24030 Beta vulgaris HOM05D000274 ORTHO05D002552 1.5e-11 72.4 39 87.2
MBI14_g38700_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D002552 1.9e-11 72.0 39 87.2
PGR111G0023 Punica granatum HOM05D000274 ORTHO05D002552 1.9e-11 72.0 39 87.2
SalBow1G7090 Salvia bowleyana HOM05D000274 ORTHO05D002552 1.9e-11 72.0 39 87.2
ATR0303G006 Amborella trichopoda HOM05D000274 ORTHO05D002552 2.5e-11 71.6 39 89.7
arahy.Tifrunner.gnm1.ann1.H8UXH3 Arachis hypogaea HOM05D000274 ORTHO05D002552 2.5e-11 71.6 39 89.7
Gohir.A05G285000 Gossypium hirsutum HOM05D000274 ORTHO05D002552 2.5e-11 71.6 39 87.2
Gohir.A12G229201 Gossypium hirsutum HOM05D000274 ORTHO05D002552 2.5e-11 71.6 39 87.2
Gohir.D01G102021 Gossypium hirsutum HOM05D000274 ORTHO05D002552 2.5e-11 71.6 39 87.2
Gohir.D09G093050 Gossypium hirsutum HOM05D000274 ORTHO05D002552 2.5e-11 71.6 39 87.2
Gohir.D12G107600 Gossypium hirsutum HOM05D000274 ORTHO05D002552 2.5e-11 71.6 39 87.2
Gorai.009G282800 Gossypium raimondii HOM05D000274 ORTHO05D002552 2.5e-11 71.6 39 87.2
BcaC03g15273 Brassica carinata HOM05D000274 ORTHO05D002552 3.3e-11 71.2 39 89.7
BcaC07g42433 Brassica carinata HOM05D000274 ORTHO05D002552 3.3e-11 71.2 39 89.7
BNapus_Darmor_BZH_scaffold_287p00220 Brassica napus HOM05D000274 ORTHO05D002552 3.3e-11 71.2 39 89.7
C02p28700 Brassica napus HOM05D000274 ORTHO05D002552 3.3e-11 71.2 39 89.7
C02p43600 Brassica napus HOM05D000274 ORTHO05D002552 3.3e-11 71.2 39 89.7
C04p42950 Brassica napus HOM05D000274 ORTHO05D002552 3.3e-11 71.2 39 89.7
C06p22930 Brassica napus HOM05D000274 ORTHO05D002552 3.3e-11 71.2 39 89.7
C06p23060 Brassica napus HOM05D000274 ORTHO05D002552 3.3e-11 71.2 39 89.7
BolC4t25865H Brassica oleracea HOM05D000274 ORTHO05D002552 3.3e-11 71.2 39 89.7
BolSC29t60600H Brassica oleracea HOM05D000274 ORTHO05D002552 3.3e-11 71.2 39 89.7
BolSC35t60659H Brassica oleracea HOM05D000274 ORTHO05D002552 3.3e-11 71.2 39 89.7
BolSC46t61010H Brassica oleracea HOM05D000274 ORTHO05D002552 3.3e-11 71.2 39 89.7
BraSC103t45477Z Brassica rapa HOM05D000274 ORTHO05D002552 3.3e-11 71.2 39 89.7
BraSC138t45563Z Brassica rapa HOM05D000274 ORTHO05D002552 3.3e-11 71.2 39 89.7
MBI14_g38260_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D002552 5.6e-11 70.5 39 87.2
Sed0002260 Sechium edule HOM05D000274 ORTHO05D002552 5.6e-11 70.5 39 87.2
Sed0019404 Sechium edule HOM05D000274 ORTHO05D002552 5.6e-11 70.5 39 87.2
Sed0022936 Sechium edule HOM05D000274 ORTHO05D002552 5.6e-11 70.5 39 87.2
EL10Ac1g01444 Beta vulgaris HOM05D000274 ORTHO05D002552 7.4e-11 70.1 39 84.6
Gohir.D06G018300 Gossypium hirsutum HOM05D000274 ORTHO05D002552 7.4e-11 70.1 39 84.6
SalBow6G1627 Salvia bowleyana HOM05D000274 ORTHO05D002552 9.6e-11 69.7 39 84.6
Sc09g0009710 Simmondsia chinensis HOM05D000274 ORTHO05D002552 1.6e-10 68.9 38 86.8
MELO3C027089.2 Cucumis melo HOM05D000274 ORTHO05D002552 2.8e-10 68.2 39 82.1
MD11G1294400 Malus domestica HOM05D000274 ORTHO05D002552 4.8e-10 67.4 38 84.2
Nitab4.5_0010531g0050 Nicotiana tabacum HOM05D000274 ORTHO05D002552 6.2e-10 67.0 39 79.5
Gohir.1Z049602 Gossypium hirsutum HOM05D000274 ORTHO05D002552 8.2e-10 66.6 35 88.6
Gohir.D06G113800 Gossypium hirsutum HOM05D000274 ORTHO05D002552 8.2e-10 66.6 38 84.2
Lalb_Chr03g0038761 Lupinus albus HOM05D000274 ORTHO05D002552 8.2e-10 66.6 39 82.1
BcaC02g09867 Brassica carinata HOM05D000274 ORTHO05D002552 1.1e-09 66.2 39 82.1
C04p35750 Brassica napus HOM05D000274 ORTHO05D002552 1.1e-09 66.2 39 82.1
C09p40540 Brassica napus HOM05D000274 ORTHO05D002552 1.1e-09 66.2 39 84.6
BolC4t25226H Brassica oleracea HOM05D000274 ORTHO05D002552 1.1e-09 66.2 39 82.1
Gohir.D06G104800 Gossypium hirsutum HOM05D000274 ORTHO05D002552 1.1e-09 66.2 39 82.1
Gorai.012G094800 Gossypium raimondii HOM05D007792 ORTHO05D009931 1.4e-09 65.9 61 60.7
Eucgr.I00671 Eucalyptus grandis HOM05D000274 ORTHO05D002552 1.8e-09 65.5 39 79.5
Gohir.D04G084960 Gossypium hirsutum HOM05D007792 ORTHO05D009931 2.4e-09 65.1 61 59.0
Nitab4.5_0005769g0060 Nicotiana tabacum HOM05D000274 ORTHO05D002552 4.0e-09 64.3 37 81.1
SabraPtG0003900 Salix brachista HOM05D000274 ORTHO05D002552 4.0e-09 64.3 39 74.4
MBI06_g25326_MAGBIO Magnolia biondii HOM05D000274 ORTHO05D002552 9.0e-09 63.2 41 75.6
Gohir.A10G134850 Gossypium hirsutum HOM05D000274 ORTHO05D002552 1.5e-08 62.4 56 55.4
EL10Ac1g01196 Beta vulgaris HOM05D000274 ORTHO05D002552 2.0e-08 62.0 39 76.9
BolC6t36200H Brassica oleracea HOM05D040023 ORTHO05D031552 5.8e-08 60.5 30 83.3
MBI18_g10796_MAGBIO Magnolia biondii HOM05D000274 ORTHO05D002552 5.8e-08 60.5 41 73.2
Medtr4g034690 Medicago truncatula HOM05D000274 ORTHO05D002552 5.8e-08 60.5 39 71.8
ECA074G0006 Erigeron canadensis HOM05D000274 ORTHO05D002552 7.6e-08 60.1 39 74.4
HanXRQChr00c0314g0573521 Helianthus annuus HOM05D000274 ORTHO05D002552 7.6e-08 60.1 39 74.4
HanXRQChr01g0020281 Helianthus annuus HOM05D000274 ORTHO05D002552 7.6e-08 60.1 39 74.4
HanXRQChr10g0283621 Helianthus annuus HOM05D000274 ORTHO05D002552 7.6e-08 60.1 39 74.4
HanXRQChr10g0284311 Helianthus annuus HOM05D000274 ORTHO05D002552 7.6e-08 60.1 39 74.4
HanXRQChr10g0289321 Helianthus annuus HOM05D000274 ORTHO05D002552 7.6e-08 60.1 39 74.4
HanXRQChr10g0318131 Helianthus annuus HOM05D000274 ORTHO05D002552 7.6e-08 60.1 39 74.4
HanXRQChr11g0326901 Helianthus annuus HOM05D000274 ORTHO05D002552 7.6e-08 60.1 39 74.4
HanXRQCPg0580111 Helianthus annuus HOM05D000274 ORTHO05D002552 7.6e-08 60.1 39 74.4
Lsat_1_v5_gn_9_50981 Lactuca sativa HOM05D000274 ORTHO05D002552 7.6e-08 60.1 39 74.4
Gohir.D02G116125 Gossypium hirsutum HOM05D000274 ORTHO05D002552 1.0e-07 59.7 39 71.8
Gohir.D12G266650 Gossypium hirsutum HOM05D000274 ORTHO05D002552 1.0e-07 59.7 35 80.0
RcHm_v2.0_Chr6g0260431 Rosa chinensis HOM05D000274 ORTHO05D002552 1.0e-07 59.7 33 84.8
BcaB02g11359 Brassica carinata HOM05D000274 ORTHO05D002552 1.3e-07 59.3 37 78.4
Gorai.002G210500 Gossypium raimondii HOM05D000274 ORTHO05D002552 1.7e-07 58.9 48 60.4
Gorai.013G004600 Gossypium raimondii HOM05D000274 ORTHO05D002552 1.7e-07 58.9 35 74.3
SMO086G0017 Selaginella moellendorffii HOM05D000274 ORTHO05D002552 2.2e-07 58.5 39 64.1
ATR1132G067 Amborella trichopoda HOM05D000274 ORTHO05D002552 2.9e-07 58.2 41 68.3
HanXRQChr11g0345211 Helianthus annuus HOM05D000274 ORTHO05D002552 3.8e-07 57.8 39 71.8
HanXRQChr04g0094301 Helianthus annuus HOM05D000274 ORTHO05D002552 6.5e-07 57.0 39 71.8
Sed0002969 Sechium edule HOM05D000274 ORTHO05D002552 6.5e-07 57.0 34 82.4
HanXRQChr04g0095101 Helianthus annuus HOM05D000274 ORTHO05D002552 8.4e-07 56.6 38 71.1
Medtr4g077730 Medicago truncatula HOM05D000274 ORTHO05D002552 8.4e-07 56.6 39 69.2
Solyc00g500023.1 Solanum lycopersicum HOM05D000274 ORTHO05D002552 8.4e-07 56.6 39 64.1
Gohir.D01G169088 Gossypium hirsutum HOM05D000274 ORTHO05D002552 1.4e-06 55.8 48 58.3
Lsat_1_v5_gn_4_118880 Lactuca sativa HOM05D000274 ORTHO05D002552 1.4e-06 55.8 39 71.8
Medtr0002s0730 Medicago truncatula HOM05D000274 ORTHO05D002552 1.4e-06 55.8 39 66.7
GSVIVG01019296001 Vitis vinifera HOM05D000274 ORTHO05D002552 1.4e-06 55.8 45 57.8
Zm00001eb039170 Zea mays HOM05D000274 ORTHO05D002552 1.4e-06 55.8 39 66.7
Zm00001eb255900 Zea mays HOM05D000274 ORTHO05D002552 1.4e-06 55.8 39 66.7
Zm00001eb434890 Zea mays HOM05D000274 ORTHO05D002552 1.4e-06 55.8 39 66.7
Zm00001eb435080 Zea mays HOM05D000274 ORTHO05D002552 1.4e-06 55.8 39 66.7
Zm00001eb435150 Zea mays HOM05D000274 ORTHO05D002552 1.4e-06 55.8 39 66.7
Zm00001eb435370 Zea mays HOM05D000274 ORTHO05D002552 1.4e-06 55.8 39 66.7
Zm00001eb437160 Zea mays HOM05D000274 ORTHO05D002552 1.4e-06 55.8 39 66.7
Zm00001eb439970 Zea mays HOM05D000274 ORTHO05D002552 1.4e-06 55.8 39 66.7
Zm00001eb440350 Zea mays HOM05D000274 ORTHO05D002552 1.4e-06 55.8 39 66.7
Gohir.D07G185750 Gossypium hirsutum HOM05D000274 ORTHO05D002552 2.5e-06 55.1 35 74.3
CAN.G1739.8 Capsicum annuum HOM05D000274 ORTHO05D002552 4.2e-06 54.3 39 66.7
Lsat_1_v5_gn_5_50301 Lactuca sativa HOM05D000274 ORTHO05D002552 4.2e-06 54.3 39 64.1
COL.COLO4_02977 Corchorus olitorius HOM05D000274 ORTHO05D002552 5.5e-06 53.9 39 61.5
COL.COLO4_03028 Corchorus olitorius HOM05D000274 ORTHO05D002552 5.5e-06 53.9 39 61.5
COL.COLO4_03061 Corchorus olitorius HOM05D000274 ORTHO05D002552 5.5e-06 53.9 39 61.5
COL.COLO4_04073 Corchorus olitorius HOM05D000274 ORTHO05D002552 5.5e-06 53.9 39 61.5
HanXRQChr06g0177591 Helianthus annuus HOM05D000274 ORTHO05D002552 9.3e-06 53.1 39 66.7


User provided reference genes

Program Settings