Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G123732 Glycine max HOM05D003784 ORTHO05D004345 2.3e-22 107.8 48 100.0
arahy.Tifrunner.gnm1.ann1.2UK2LN Arachis hypogaea HOM05D003784 ORTHO05D004345 2.1e-15 84.7 42 85.7
arahy.Tifrunner.gnm1.ann1.46601I Arachis hypogaea HOM05D003784 ORTHO05D004345 2.1e-15 84.7 42 85.7
arahy.Tifrunner.gnm1.ann1.6BI6KA Arachis hypogaea HOM05D003784 ORTHO05D004345 2.1e-15 84.7 42 85.7
arahy.Tifrunner.gnm1.ann1.9FD3VR Arachis hypogaea HOM05D003784 ORTHO05D004345 2.1e-15 84.7 42 85.7
arahy.Tifrunner.gnm1.ann1.V4GG8W Arachis hypogaea HOM05D003784 ORTHO05D004345 2.1e-15 84.7 42 85.7
arahy.Tifrunner.gnm1.ann1.VPW534 Arachis hypogaea HOM05D003784 ORTHO05D004345 2.1e-15 84.7 42 85.7
arahy.Tifrunner.gnm1.ann1.XG19R5 Arachis hypogaea HOM05D003784 ORTHO05D004345 7.9e-15 82.8 43 81.4
Ca_04758_v3 Cicer arietinum L. HOM05D003784 ORTHO05D004345 7.9e-15 82.8 42 83.3
Glyma.01G044200 Glycine max HOM05D003784 ORTHO05D004345 7.9e-15 82.8 42 83.3
Glyma.02G019400 Glycine max HOM05D003784 ORTHO05D004345 7.9e-15 82.8 42 83.3
Lj2g0024025 Lotus japonicus HOM05D003784 ORTHO05D004345 7.9e-15 82.8 42 83.3
Potri.006G110500 Populus trichocarpa HOM05D003784 ORTHO05D004345 7.9e-15 82.8 42 83.3
TPR.G4021 Trifolium pratense HOM05D003784 ORTHO05D004345 7.9e-15 82.8 42 83.3
Lalb_Chr10g0098081 Lupinus albus HOM05D003784 ORTHO05D004345 1.0e-14 82.4 42 83.3
Lalb_Chr17g0340481 Lupinus albus HOM05D003784 ORTHO05D004345 1.0e-14 82.4 42 83.3
Medtr5g038900 Medicago truncatula HOM05D003784 ORTHO05D004345 1.0e-14 82.4 42 83.3
Phvul.002G089000 Phaseolus vulgaris HOM05D003784 ORTHO05D004345 1.0e-14 82.4 42 83.3
Psat2g121920 Pisum sativum HOM05D003784 ORTHO05D004345 1.0e-14 82.4 42 83.3
PGR102G1616 Punica granatum HOM05D003784 ORTHO05D004345 1.3e-14 82.0 42 81.0
MD16G1076200 Malus domestica HOM05D003784 ORTHO05D004345 1.8e-14 81.6 42 81.0
Oeu045419.1 Olea europaea HOM05D003784 ORTHO05D004345 1.8e-14 81.6 42 81.0
Prupe.1G270800 Prunus persica HOM05D003784 ORTHO05D004345 1.8e-14 81.6 42 81.0
Migut.L01323 Erythranthe guttata HOM05D003784 ORTHO05D004345 2.3e-14 81.3 42 81.0
MSTRG.682 Avicennia marina HOM05D003784 ORTHO05D004345 3.0e-14 80.9 42 78.6
Nitab4.5_0000141g0330 Nicotiana tabacum HOM05D003784 ORTHO05D004345 3.0e-14 80.9 42 78.6
Oeu000625.2 Olea europaea HOM05D003784 ORTHO05D004345 3.0e-14 80.9 42 78.6
Peaxi162Scf00026g02810 Petunia axillaris HOM05D003784 ORTHO05D004345 3.0e-14 80.9 42 78.6
Solyc01g010650.3 Solanum lycopersicum HOM05D003784 ORTHO05D004345 3.0e-14 80.9 42 78.6
Sopen01g006280 Solanum pennellii HOM05D003784 ORTHO05D004345 3.0e-14 80.9 42 78.6
CiPaw.05G138300 Carya illinoinensis HOM05D003784 ORTHO05D004345 3.9e-14 80.5 42 78.6
Nn4g23086 Nelumbo nucifera HOM05D003784 ORTHO05D004345 3.9e-14 80.5 42 81.0
SalBow2G2925 Salvia bowleyana HOM05D003784 ORTHO05D004345 3.9e-14 80.5 42 81.0
SGA_v2.0_scaffold53G19437 Striga asiatica HOM05D003784 ORTHO05D004345 3.9e-14 80.5 42 78.6
Ah.03g135330 Amaranthus hybridus HOM05D003784 ORTHO05D004345 5.1e-14 80.1 41 80.5
Aqoxy3G03325 Aquilegia oxysepala HOM05D003784 ORTHO05D004345 5.1e-14 80.1 42 78.6
arahy.Tifrunner.gnm1.ann1.23SP7E Arachis hypogaea HOM05D003784 ORTHO05D004345 5.1e-14 80.1 42 78.6
CANSAT64G0696 Cannabis sativa HOM05D003784 ORTHO05D004345 5.1e-14 80.1 42 78.6
CiPaw.06G082300 Carya illinoinensis HOM05D003784 ORTHO05D004345 5.1e-14 80.1 42 78.6
ClCG05G024480 Citrullus lanatus HOM05D003784 ORTHO05D004345 5.1e-14 80.1 42 78.6
MELO3C012076.2 Cucumis melo HOM05D003784 ORTHO05D004345 5.1e-14 80.1 42 78.6
CsaV3_5G032480 Cucumis sativus L. HOM05D003784 ORTHO05D004345 5.1e-14 80.1 42 78.6
DCAR_017796 Daucus carota HOM05D003784 ORTHO05D004345 5.1e-14 80.1 42 78.6
Dinv24971 Davidia involucrata HOM05D003784 ORTHO05D004345 5.1e-14 80.1 42 78.6
HanXRQChr17g0570491 Helianthus annuus HOM05D003784 ORTHO05D004345 5.1e-14 80.1 41 80.5
Nitab4.5_0012600g0020 Nicotiana tabacum HOM05D003784 ORTHO05D004345 5.1e-14 80.1 42 76.2
Sed0017884 Sechium edule HOM05D003784 ORTHO05D004345 5.1e-14 80.1 42 78.6
TAR629G2331 Trochodendron aralioides HOM05D003784 ORTHO05D004345 5.1e-14 80.1 42 78.6
VMungo1215G1164 Vigna mungo HOM05D003784 ORTHO05D004345 5.1e-14 80.1 42 78.6
Actinidia08219 Actinidia chinensis HOM05D003784 ORTHO05D004345 6.7e-14 79.7 42 78.6
Actinidia19859 Actinidia chinensis HOM05D003784 ORTHO05D004345 6.7e-14 79.7 43 76.7
EL10Ac6g13171 Beta vulgaris HOM05D003784 ORTHO05D004345 6.7e-14 79.7 42 78.6
BcaB08g34391 Brassica carinata HOM05D003784 ORTHO05D004345 6.7e-14 79.7 42 78.6
A09p62250 Brassica napus HOM05D003784 ORTHO05D004345 6.7e-14 79.7 42 78.6
C08p45770 Brassica napus HOM05D003784 ORTHO05D004345 6.7e-14 79.7 42 78.6
BolC8t52131H Brassica oleracea HOM05D003784 ORTHO05D004345 6.7e-14 79.7 42 78.6
BraA09t41588Z Brassica rapa HOM05D003784 ORTHO05D004345 6.7e-14 79.7 42 78.6
Cpa.g.sc183.26 Carica papaya HOM05D003784 ORTHO05D004345 6.7e-14 79.7 42 78.6
Ciclev10032069m.g Citrus clementina HOM05D003784 ORTHO05D004345 6.7e-14 79.7 42 78.6
COL.COLO4_22969 Corchorus olitorius HOM05D003784 ORTHO05D004345 6.7e-14 79.7 42 78.6
Dinv34176 Davidia involucrata HOM05D003784 ORTHO05D004345 6.7e-14 79.7 42 78.6
ECA234G1012 Erigeron canadensis HOM05D003784 ORTHO05D004345 6.7e-14 79.7 42 78.6
Lsat_1_v5_gn_4_8641 Lactuca sativa HOM05D003784 ORTHO05D004345 6.7e-14 79.7 42 78.6
MD07G1011400 Malus domestica HOM05D003784 ORTHO05D004345 6.7e-14 79.7 42 78.6
Potri.016G139100 Populus trichocarpa HOM05D003784 ORTHO05D004345 6.7e-14 79.7 42 78.6
Rhsim12G0060900 Rhododendron simsii HOM05D003784 ORTHO05D004345 6.7e-14 79.7 42 78.6
Hund05900 Selenicereus undatus HOM05D003784 ORTHO05D004345 6.7e-14 79.7 42 78.6
Hund25260 Selenicereus undatus HOM05D003784 ORTHO05D004345 6.7e-14 79.7 42 78.6
Thecc.02G352000 Theobroma cacao HOM05D003784 ORTHO05D004345 6.7e-14 79.7 42 78.6
TWI23G0896 Tripterygium wilfordii HOM05D003784 ORTHO05D004345 6.7e-14 79.7 42 78.6
TAR374G1722 Trochodendron aralioides HOM05D003784 ORTHO05D004345 6.7e-14 79.7 42 78.6
vmacro09253 Vaccinium macrocarpon HOM05D003784 ORTHO05D004345 6.7e-14 79.7 42 78.6
vmacro17528 Vaccinium macrocarpon HOM05D003784 ORTHO05D004345 6.7e-14 79.7 42 78.6
vmacro23353 Vaccinium macrocarpon HOM05D003784 ORTHO05D004345 6.7e-14 79.7 42 78.6
Duzib268G0480 Durio zibethinus HOM05D003784 ORTHO05D004345 8.7e-14 79.3 42 78.6
FvH4_4g31670 Fragaria vesca HOM05D003784 ORTHO05D004345 8.7e-14 79.3 42 78.6
FAN07G0095 Fragaria x ananassa HOM05D003784 ORTHO05D004345 8.7e-14 79.3 42 78.6
FAN12G3834 Fragaria x ananassa HOM05D003784 ORTHO05D004345 8.7e-14 79.3 42 78.6
FAN17G0203 Fragaria x ananassa HOM05D003784 ORTHO05D004345 8.7e-14 79.3 42 78.6
FAN22G2192 Fragaria x ananassa HOM05D003784 ORTHO05D004345 8.7e-14 79.3 42 78.6
Gohir.A13G072400 Gossypium hirsutum HOM05D003784 ORTHO05D004345 8.7e-14 79.3 42 78.6
Gohir.D13G072500 Gossypium hirsutum HOM05D003784 ORTHO05D004345 8.7e-14 79.3 42 78.6
Gorai.013G083200 Gossypium raimondii HOM05D003784 ORTHO05D004345 8.7e-14 79.3 42 78.6
MD13G1076000 Malus domestica HOM05D003784 ORTHO05D004345 8.7e-14 79.3 42 78.6
Manes.01G188100 Manihot esculenta HOM05D003784 ORTHO05D004345 8.7e-14 79.3 42 78.6
Manes.05G101600 Manihot esculenta HOM05D003784 ORTHO05D004345 8.7e-14 79.3 42 78.6
Psat4g142800 Pisum sativum HOM05D003784 ORTHO05D004345 8.7e-14 79.3 42 81.0
RcHm_v2.0_Chr4g0440181 Rosa chinensis HOM05D003784 ORTHO05D004345 8.7e-14 79.3 42 78.6
Eucgr.B03416 Eucalyptus grandis HOM05D003784 ORTHO05D004345 1.1e-13 79.0 42 76.2
PGSC0003DMG400000862 Solanum tuberosum HOM05D003784 ORTHO05D004345 1.1e-13 79.0 42 76.2
SGA_v2.0_scaffold302G47843 Striga asiatica HOM05D003784 ORTHO05D004345 1.1e-13 79.0 42 76.2
Aa31LG1G680 Aethionema arabicum HOM05D003784 ORTHO05D004345 1.5e-13 78.6 42 76.2
AL1G26250 Arabidopsis lyrata HOM05D003784 ORTHO05D004345 1.5e-13 78.6 42 76.2
AT1G14360 Arabidopsis thaliana HOM05D003784 ORTHO05D004345 1.5e-13 78.6 42 76.2
BcaB02g06486 Brassica carinata HOM05D003784 ORTHO05D004345 1.5e-13 78.6 42 76.2
BcaC05g25335 Brassica carinata HOM05D003784 ORTHO05D004345 1.5e-13 78.6 42 76.2
A06p10370 Brassica napus HOM05D003784 ORTHO05D004345 1.5e-13 78.6 42 76.2
BraA06t24218Z Brassica rapa HOM05D003784 ORTHO05D004345 1.5e-13 78.6 42 76.2
CSS0014710 Camellia sinensis var. sinensis HOM05D003784 ORTHO05D004345 1.5e-13 78.6 42 76.2
CSS0033561 Camellia sinensis var. sinensis HOM05D003784 ORTHO05D004345 1.5e-13 78.6 42 76.2
Carub.0001s1406 Capsella rubella HOM05D003784 ORTHO05D004345 1.5e-13 78.6 42 76.2
CAN.G512.10 Capsicum annuum HOM05D003784 ORTHO05D004345 1.5e-13 78.6 42 76.2
CARHR014800 Cardamine hirsuta HOM05D003784 ORTHO05D004345 1.5e-13 78.6 42 76.2
Cc11_g13340 Coffea canephora HOM05D003784 ORTHO05D004345 1.5e-13 78.6 42 76.2
DCAR_027398 Daucus carota HOM05D003784 ORTHO05D004345 1.5e-13 78.6 42 76.2
ECA246G4538 Erigeron canadensis HOM05D003784 ORTHO05D004345 1.5e-13 78.6 42 76.2
Thhalv10008161m.g Eutrema salsugineum HOM05D003784 ORTHO05D004345 1.5e-13 78.6 42 76.2
HanXRQChr17g0545081 Helianthus annuus HOM05D003784 ORTHO05D004345 1.5e-13 78.6 42 76.2
Lsat_1_v5_gn_8_53841 Lactuca sativa HOM05D003784 ORTHO05D004345 1.5e-13 78.6 42 76.2
Nitab4.5_0003062g0080 Nicotiana tabacum HOM05D003784 ORTHO05D004345 1.5e-13 78.6 42 76.2
Nitab4.5_0007777g0010 Nicotiana tabacum HOM05D003784 ORTHO05D004345 1.5e-13 78.6 42 76.2
PSO591G0079 Papaver somniferum HOM05D003784 ORTHO05D004345 1.5e-13 78.6 42 76.2
PSO832G3994 Papaver somniferum HOM05D003784 ORTHO05D004345 1.5e-13 78.6 42 76.2
Peaxi162Scf01030g00013 Petunia axillaris HOM05D003784 ORTHO05D004345 1.5e-13 78.6 42 76.2
SalBow2G2485 Salvia bowleyana HOM05D003784 ORTHO05D004345 1.5e-13 78.6 42 78.6
Sp1g12730 Schrenkiella parvula HOM05D003784 ORTHO05D004345 1.5e-13 78.6 42 76.2
Sc11g0001750 Simmondsia chinensis HOM05D003784 ORTHO05D004345 1.5e-13 78.6 42 76.2
Solyc05g007150.4 Solanum lycopersicum HOM05D003784 ORTHO05D004345 1.5e-13 78.6 42 76.2
Sopen05g003110 Solanum pennellii HOM05D003784 ORTHO05D004345 1.5e-13 78.6 42 76.2
PGSC0003DMG400025616 Solanum tuberosum HOM05D003784 ORTHO05D004345 1.5e-13 78.6 42 76.2
THA.LOC104805144 Tarenaya hassleriana HOM05D003784 ORTHO05D004345 1.5e-13 78.6 42 76.2
HPP92_009104 Vanilla planifolia HOM05D003784 ORTHO05D004345 1.5e-13 78.6 41 78.0
Duzib251G0232 Durio zibethinus HOM05D003784 ORTHO05D004345 1.9e-13 78.2 42 76.2
Nn3g17165 Nelumbo nucifera HOM05D003784 ORTHO05D004345 1.9e-13 78.2 42 76.2
GSVIVG01020040001 Vitis vinifera HOM05D003784 ORTHO05D004345 1.9e-13 78.2 42 76.2
CSS0030862 Camellia sinensis var. sinensis HOM05D003784 ORTHO05D004345 2.5e-13 77.8 42 73.8
Thhalv10004564m.g Eutrema salsugineum HOM05D003784 ORTHO05D004345 2.5e-13 77.8 42 76.2
arahy.Tifrunner.gnm1.ann1.5Y78DL Arachis hypogaea HOM05D003784 ORTHO05D004345 3.3e-13 77.4 42 78.6
Lj6A792T38 Lonicera japonica HOM05D003784 ORTHO05D004345 3.3e-13 77.4 42 78.6
MBI02_g05733_MAGBIO Magnolia biondii HOM05D003784 ORTHO05D004345 3.3e-13 77.4 42 76.2
CARHR145250 Cardamine hirsuta HOM05D003784 ORTHO05D004345 4.3e-13 77.0 42 73.8
AUR62005743 Chenopodium quinoa HOM05D003784 ORTHO05D004345 4.3e-13 77.0 42 76.2
THA.LOC104824085 Tarenaya hassleriana HOM05D003784 ORTHO05D004345 4.3e-13 77.0 42 73.8
Atru.chr11.1836 Acer truncatum HOM05D003784 ORTHO05D004345 5.6e-13 76.6 42 73.8
AL5G12020 Arabidopsis lyrata HOM05D003784 ORTHO05D004345 5.6e-13 76.6 42 73.8
BcaB07g30322 Brassica carinata HOM05D003784 ORTHO05D004345 5.6e-13 76.6 42 73.8
BcaC03g17169 Brassica carinata HOM05D003784 ORTHO05D004345 5.6e-13 76.6 42 73.8
A02p33120 Brassica napus HOM05D003784 ORTHO05D004345 5.6e-13 76.6 42 73.8
C02p50920 Brassica napus HOM05D003784 ORTHO05D004345 5.6e-13 76.6 42 73.8
BolC2t11183H Brassica oleracea HOM05D003784 ORTHO05D004345 5.6e-13 76.6 42 73.8
BraA02t08335Z Brassica rapa HOM05D003784 ORTHO05D004345 5.6e-13 76.6 42 73.8
Cfa009009 Carpinus fangiana HOM05D003784 ORTHO05D004345 5.6e-13 76.6 42 76.2
Haze_12038 Corylus avellana HOM05D003784 ORTHO05D004345 5.6e-13 76.6 42 76.2
Lj3A1041T80 Lonicera japonica HOM05D003784 ORTHO05D004345 5.6e-13 76.6 42 73.8
Sp2g13910 Schrenkiella parvula HOM05D003784 ORTHO05D004345 5.6e-13 76.6 42 73.8
unitig_26.g10312 Utricularia gibba HOM05D003784 ORTHO05D004345 5.6e-13 76.6 42 73.8
Aa31LG2G7460 Aethionema arabicum HOM05D003784 ORTHO05D004345 7.4e-13 76.3 42 73.8
QL03p065037 Quercus lobata HOM05D003784 ORTHO05D004345 7.4e-13 76.3 41 75.6
C05p12160 Brassica napus HOM05D003784 ORTHO05D004345 9.6e-13 75.9 42 73.8
Zm00001eb277180 Zea mays HOM05D003784 ORTHO05D004345 1.3e-12 75.5 42 69.0
BolC5t29969H Brassica oleracea HOM05D003784 ORTHO05D004345 2.1e-12 74.7 42 71.4
CDE04G2861 Ceratophyllum demersum HOM05D003784 ORTHO05D004345 2.8e-12 74.3 42 71.4
CDE07G0123 Ceratophyllum demersum HOM05D003784 ORTHO05D004345 2.8e-12 74.3 42 71.4
AT2G02810 Arabidopsis thaliana HOM05D003784 ORTHO05D004345 4.8e-12 73.6 42 71.4
Carub.0005s0172 Capsella rubella HOM05D003784 ORTHO05D004345 4.8e-12 73.6 42 71.4
AUR62028815 Chenopodium quinoa HOM05D003784 ORTHO05D004345 6.2e-12 73.2 42 73.8
Mapoly0006s0029 Marchantia polymorpha HOM05D003784 ORTHO05D004345 6.2e-12 73.2 42 69.0
Os06g0593100 Oryza sativa ssp. japonica HOM05D003784 ORTHO05D004345 6.2e-12 73.2 42 66.7
SMO165G0026 Selaginella moellendorffii HOM05D003784 ORTHO05D004345 6.2e-12 73.2 42 69.0
Zm00001eb277110 Zea mays HOM05D003784 ORTHO05D004345 6.2e-12 73.2 42 66.7
Zm00001eb386020 Zea mays HOM05D003784 ORTHO05D004345 6.2e-12 73.2 42 66.7
ATR0564G448 Amborella trichopoda HOM05D003784 ORTHO05D004345 8.1e-12 72.8 42 71.4
AagrBONN_evm.TU.Sc2ySwM_117.860 Anthoceros agrestis HOM05D003784 ORTHO05D004345 3.1e-11 70.9 44 63.6
Pp3c11_9530 Physcomitrium patens HOM05D003784 ORTHO05D004345 9.0e-11 69.3 42 64.3
CBR_g44614 Chara braunii HOM05D003784 ORTHO05D004345 1.5e-10 68.6 42 66.7
Pp3c2_15920 Physcomitrium patens HOM05D003784 ORTHO05D004345 1.0e-09 65.9 42 61.9
SEGI_25531 Sequoiadendron giganteum HOM05D003784 ORTHO05D004345 1.0e-09 65.9 41 58.5
C09p34230 Brassica napus HOM05D003784 ORTHO05D004345 2.2e-09 64.7 37 67.6
BolC9t56267H Brassica oleracea HOM05D003784 ORTHO05D004345 2.2e-09 64.7 37 67.6
arahy.Tifrunner.gnm1.ann1.XR1P03 Arachis hypogaea HOM05D003784 ORTHO05D004345 1.2e-07 58.9 30 86.7
Sabra04G0155100 Salix brachista HOM05D003784 ORTHO05D004345 1.8e-06 55.1 89 34.8
Pp3c2_31960 Physcomitrium patens HOM05D003784 ORTHO05D004345 2.3e-06 54.7 41 51.2
Cre01.g032050 Chlamydomonas reinhardtii HOM05D003784 ORTHO05D004345 3.9e-06 53.9 42 50.0


User provided reference genes

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