Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G110601 Glycine max HOM05D000876 ORTHO05D000285 1.1e-128 463.4 240 100.0
Glyma.19G101700 Glycine max HOM05D000876 ORTHO05D000285 5.4e-88 328.2 180 95.0
Glyma.18G094800 Glycine max HOM05D000876 ORTHO05D000285 1.6e-84 316.6 180 91.1
Glyma.02G166900 Glycine max HOM05D000876 ORTHO05D000285 1.4e-75 287.0 161 93.2
Glyma.09G090801 Glycine max HOM05D000876 ORTHO05D000285 2.5e-69 266.2 240 68.8
Glyma.15G140101 Glycine max HOM05D000876 ORTHO05D000285 3.2e-48 196.1 117 88.9
Glyma.04G129400 Glycine max HOM05D000876 ORTHO05D000285 9.6e-45 184.5 104 92.3
Lj2g0008174 Lotus japonicus HOM05D000876 ORTHO05D000285 6.9e-43 178.3 177 55.4
Glyma.18G134450 Glycine max HOM05D000876 ORTHO05D000285 2.9e-41 172.9 112 84.8
Glyma.05G069200 Glycine max HOM05D000876 ORTHO05D000285 7.9e-39 164.9 90 94.4
Glyma.19G073700 Glycine max HOM05D000876 ORTHO05D000285 8.7e-38 161.4 90 93.3
Glyma.15G226650 Glycine max HOM05D000876 ORTHO05D000285 1.6e-36 157.1 90 91.1
Lj1g0007225 Lotus japonicus HOM05D000034 ORTHO05D000037 6.2e-36 155.2 159 54.7
Lj2g0028060 Lotus japonicus HOM05D000034 ORTHO05D000037 6.2e-36 155.2 159 54.7
Lj1g0001620 Lotus japonicus HOM05D000034 ORTHO05D000037 5.0e-25 119.0 104 58.7
Glyma.08G267500 Glycine max HOM05D000876 ORTHO05D000285 8.5e-25 118.2 67 91.0
arahy.Tifrunner.gnm1.ann1.GG5U8X Arachis hypogaea HOM05D000876 ORTHO05D000285 4.3e-21 105.9 184 40.8
arahy.Tifrunner.gnm1.ann1.AG0B9Q Arachis hypogaea HOM05D000034 ORTHO05D000285 7.4e-21 105.1 184 40.2
arahy.Tifrunner.gnm1.ann1.2911W9 Arachis hypogaea HOM05D000876 ORTHO05D000285 1.7e-20 104.0 182 40.7
arahy.Tifrunner.gnm1.ann1.GL17HH Arachis hypogaea HOM05D000034 ORTHO05D000037 2.2e-20 103.6 184 39.7
arahy.Tifrunner.gnm1.ann1.Z2QP4M Arachis hypogaea HOM05D000034 ORTHO05D000037 2.2e-20 103.6 182 40.1
arahy.Tifrunner.gnm1.ann1.PEG6DJ Arachis hypogaea HOM05D000034 ORTHO05D000037 3.7e-20 102.8 184 39.7
arahy.Tifrunner.gnm1.ann1.R6BV2D Arachis hypogaea HOM05D000876 ORTHO05D000285 4.8e-20 102.4 182 39.0
Glyma.06G250600 Glycine max HOM05D000876 ORTHO05D000285 6.3e-20 102.1 52 96.2
arahy.Tifrunner.gnm1.ann1.L4SQ9F Arachis hypogaea HOM05D000034 ORTHO05D000037 1.1e-19 101.3 184 39.7
arahy.Tifrunner.gnm1.ann1.7Y6611 Arachis hypogaea HOM05D000034 ORTHO05D000037 1.4e-19 100.9 184 39.1
arahy.Tifrunner.gnm1.ann1.X5RLQI Arachis hypogaea HOM05D000034 ORTHO05D000285 2.0e-18 97.1 184 39.1
arahy.Tifrunner.gnm1.ann1.M8N6J9 Arachis hypogaea HOM05D000876 ORTHO05D000285 3.4e-18 96.3 177 39.5
arahy.Tifrunner.gnm1.ann1.2F6TQ9 Arachis hypogaea HOM05D000876 ORTHO05D000285 7.7e-18 95.1 183 38.8
arahy.Tifrunner.gnm1.ann1.I2TZJW Arachis hypogaea HOM05D000876 ORTHO05D000285 7.7e-18 95.1 183 38.8
Lj1g0019277 Lotus japonicus HOM05D000876 ORTHO05D000285 1.4e-16 90.9 191 35.6
arahy.Tifrunner.gnm1.ann1.01IP25 Arachis hypogaea HOM05D000034 ORTHO05D000037 6.1e-15 85.5 170 37.6
QL04p079613 Quercus lobata HOM05D000876 ORTHO05D000285 9.7e-13 78.2 185 32.4
arahy.Tifrunner.gnm1.ann1.ZGB0RI Arachis hypogaea HOM05D000034 ORTHO05D000037 1.7e-12 77.4 176 34.7
CANSAT56G2973 Cannabis sativa HOM05D000876 ORTHO05D000285 1.7e-12 77.4 198 34.3
arahy.Tifrunner.gnm1.ann1.UKR2WH Arachis hypogaea HOM05D000034 ORTHO05D000037 3.7e-12 76.3 136 39.0
Psat0s2829g0240 Pisum sativum HOM05D011477 ORTHO05D000285 6.3e-12 75.5 191 31.9
Psat7g204440 Pisum sativum HOM05D011477 ORTHO05D000285 8.2e-12 75.1 166 31.9
QL08p029247 Quercus lobata HOM05D013302 ORTHO05D015047 8.2e-12 75.1 186 30.6
arahy.Tifrunner.gnm1.ann1.41KYN2 Arachis hypogaea HOM05D000876 ORTHO05D000285 1.4e-11 74.3 60 58.3
CANSAT78G1247 Cannabis sativa HOM05D000876 ORTHO05D000285 2.4e-11 73.6 178 34.3
Psat2g138640 Pisum sativum HOM05D011477 ORTHO05D004705 2.4e-11 73.6 182 30.8
CSS0024396 Camellia sinensis var. sinensis HOM05D021170 ORTHO05D000285 3.1e-11 73.2 178 31.5
QL05p031161 Quercus lobata HOM05D000034 ORTHO05D000037 5.3e-11 72.4 188 30.3
Hund23719 Selenicereus undatus HOM05D000876 ORTHO05D000285 5.3e-11 72.4 211 29.9
arahy.Tifrunner.gnm1.ann1.L9L2A8 Arachis hypogaea HOM05D000034 ORTHO05D000037 6.9e-11 72.0 172 35.5
CANSAT54G1231 Cannabis sativa HOM05D000876 ORTHO05D000285 9.1e-11 71.6 176 33.5
arahy.Tifrunner.gnm1.ann1.RZM5P2 Arachis hypogaea HOM05D000034 ORTHO05D000037 1.2e-10 71.2 138 37.0
CANSAT01G0041 Cannabis sativa HOM05D000876 ORTHO05D000285 1.2e-10 71.2 178 33.1
Psat5g073200 Pisum sativum HOM05D011477 ORTHO05D000285 2.0e-10 70.5 166 31.3
Sed0005915 Sechium edule HOM05D000876 ORTHO05D000285 2.6e-10 70.1 178 31.5
arahy.Tifrunner.gnm1.ann1.6EEP2Q Arachis hypogaea HOM05D000876 ORTHO05D000285 5.9e-10 68.9 178 32.6
arahy.Tifrunner.gnm1.ann1.89H18N Arachis hypogaea HOM05D000876 ORTHO05D000285 5.9e-10 68.9 178 32.6
Ah.01g014380 Amaranthus hybridus HOM05D000876 ORTHO05D002662 1.0e-09 68.2 185 27.6
Hund08047 Selenicereus undatus HOM05D000876 ORTHO05D002662 1.7e-09 67.4 211 29.4
SGA_v2.0_scaffold136G35048 Striga asiatica HOM05D045704 ORTHO05D000285 1.7e-09 67.4 185 28.6
MD15G1314200 Malus domestica HOM05D000876 ORTHO05D000285 2.2e-09 67.0 191 30.9
Hund08681 Selenicereus undatus HOM05D000876 ORTHO05D000285 2.2e-09 67.0 211 28.4
arahy.Tifrunner.gnm1.ann1.95169C Arachis hypogaea HOM05D000034 ORTHO05D000037 3.8e-09 66.2 135 35.6
CANSAT11G0869 Cannabis sativa HOM05D000876 ORTHO05D000285 5.0e-09 65.9 191 29.8
CANSAT64G0985 Cannabis sativa HOM05D000876 ORTHO05D000285 5.0e-09 65.9 191 29.8
Atru.chr2.2393 Acer truncatum HOM05D000034 ORTHO05D000037 8.5e-09 65.1 172 30.2
Hund30880 Selenicereus undatus HOM05D000876 ORTHO05D000285 8.5e-09 65.1 200 30.5
Atru.chr11.998 Acer truncatum HOM05D000876 ORTHO05D000285 1.1e-08 64.7 177 32.2
Psat7g217560 Pisum sativum HOM05D011477 ORTHO05D000285 1.1e-08 64.7 184 28.8
CANSAT35G0018 Cannabis sativa HOM05D000876 ORTHO05D000285 1.4e-08 64.3 183 32.2
CANSAT35G1570 Cannabis sativa HOM05D000876 ORTHO05D000285 1.4e-08 64.3 176 33.0
Psat5g236800 Pisum sativum HOM05D011477 ORTHO05D000285 1.9e-08 63.9 178 30.9
arahy.Tifrunner.gnm1.ann1.LVAF86 Arachis hypogaea HOM05D000034 ORTHO05D000037 2.5e-08 63.5 131 35.1
arahy.Tifrunner.gnm1.ann1.VI2TS7 Arachis hypogaea HOM05D000034 ORTHO05D000037 2.5e-08 63.5 53 56.6
CANSAT11G0810 Cannabis sativa HOM05D000876 ORTHO05D000285 9.4e-08 61.6 191 28.3
FAN08G3019 Fragaria x ananassa HOM05D000876 ORTHO05D000285 9.4e-08 61.6 197 29.4
QL01p041709 Quercus lobata HOM05D000876 ORTHO05D000285 9.4e-08 61.6 179 26.8
Hund14971 Selenicereus undatus HOM05D000876 ORTHO05D000285 9.4e-08 61.6 211 27.0
Psat5g021720 Pisum sativum HOM05D011477 ORTHO05D000285 1.2e-07 61.2 159 31.4
CsaV3_5G004940 Cucumis sativus L. HOM05D000876 ORTHO05D000285 1.6e-07 60.8 176 29.5
FAN17G2644 Fragaria x ananassa HOM05D000876 ORTHO05D000285 1.6e-07 60.8 191 27.7
FvH4_5g23913 Fragaria vesca HOM05D000876 ORTHO05D000285 2.7e-07 60.1 188 27.7
FAN05G3178 Fragaria x ananassa HOM05D000876 ORTHO05D000285 3.6e-07 59.7 197 29.4
CANSAT25G2261 Cannabis sativa HOM05D000876 ORTHO05D000285 4.7e-07 59.3 191 27.7
Atru.chr2.1367 Acer truncatum HOM05D000876 ORTHO05D000285 6.1e-07 58.9 127 30.7
Hund26462 Selenicereus undatus HOM05D000876 ORTHO05D002662 6.1e-07 58.9 140 32.1
FAN05G4669 Fragaria x ananassa HOM05D000876 ORTHO05D000285 8.0e-07 58.5 189 30.7
TWI09G1617 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 8.0e-07 58.5 204 29.9
QL03p014458 Quercus lobata HOM05D000876 ORTHO05D000285 1.0e-06 58.2 179 26.3
arahy.Tifrunner.gnm1.ann1.A1XH9Q Arachis hypogaea HOM05D000034 ORTHO05D000285 1.4e-06 57.8 170 34.7
arahy.Tifrunner.gnm1.ann1.NY2INN Arachis hypogaea HOM05D000876 ORTHO05D000285 1.4e-06 57.8 172 31.4
CANSAT21G1745 Cannabis sativa HOM05D000876 ORTHO05D000285 1.4e-06 57.8 191 27.7
QL06p033300 Quercus lobata HOM05D000876 ORTHO05D000285 1.4e-06 57.8 182 27.5
Ah.03g141330 Amaranthus hybridus HOM05D000876 ORTHO05D000285 1.8e-06 57.4 215 24.2
Ah.10g031690 Amaranthus hybridus HOM05D000034 ORTHO05D000285 1.8e-06 57.4 215 24.2
CANSAT21G2246 Cannabis sativa HOM05D000876 ORTHO05D000285 1.8e-06 57.4 191 27.7
CANSAT64G0872 Cannabis sativa HOM05D000876 ORTHO05D000285 2.3e-06 57.0 126 36.5
CANSAT78G0895 Cannabis sativa HOM05D000876 ORTHO05D000285 2.3e-06 57.0 191 27.2
CiPaw.10G065300 Carya illinoinensis HOM05D000876 ORTHO05D000285 2.3e-06 57.0 185 26.5
CiPaw.15G017800 Carya illinoinensis HOM05D000876 ORTHO05D000285 5.2e-06 55.8 182 28.0
FAN17G2734 Fragaria x ananassa HOM05D000876 ORTHO05D000285 6.7e-06 55.5 172 26.2


User provided reference genes

Program Settings