Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G093200 Glycine max HOM05D004902 ORTHO05D006603 0.0e+00 1159.8 581 100.0
Glyma.18G108300 Glycine max HOM05D004902 ORTHO05D006603 0.0e+00 1133.6 581 97.8
Phvul.006G046400 Phaseolus vulgaris HOM05D004902 ORTHO05D006603 0.0e+00 1085.9 581 94.3
Psat5g177120 Pisum sativum HOM05D004902 ORTHO05D006603 1.2e-298 1029.2 581 88.6
Lj4g0024994 Lotus japonicus HOM05D004902 ORTHO05D006603 7.7e-298 1026.5 552 92.0
Medtr3g052850 Medicago truncatula HOM05D004902 ORTHO05D006603 8.5e-297 1023.1 583 88.5
TPR.G33794 Trifolium pratense HOM05D004902 ORTHO05D006603 1.6e-295 1018.8 590 87.1
Ca_14752_v3 Cicer arietinum L. HOM05D004902 ORTHO05D006603 1.0e-294 1016.1 581 88.1
Hma1.2p1_0036F.1_g023440 Hydrangea macrophylla HOM05D004902 ORTHO05D006603 1.6e-287 992.3 548 89.1
arahy.Tifrunner.gnm1.ann1.67NMHM Arachis hypogaea HOM05D004902 ORTHO05D006603 4.7e-287 990.7 593 85.3
Dinv40776 Davidia involucrata HOM05D004902 ORTHO05D006603 4.0e-286 987.6 579 85.5
QL08p009339 Quercus lobata HOM05D004902 ORTHO05D006603 5.2e-286 987.3 593 84.5
TWI39G0824 Tripterygium wilfordii HOM05D004902 ORTHO05D006603 1.5e-285 985.7 577 85.8
MD03G1198000 Malus domestica HOM05D004902 ORTHO05D006603 3.3e-285 984.6 589 84.4
arahy.Tifrunner.gnm1.ann1.E3581I Arachis hypogaea HOM05D004902 ORTHO05D006603 7.5e-285 983.4 597 84.3
Lalb_Chr10g0107081 Lupinus albus HOM05D004902 ORTHO05D006603 7.5e-285 983.4 552 88.4
Prupe.4G217200 Prunus persica HOM05D004902 ORTHO05D006603 4.8e-284 980.7 589 84.4
RcHm_v2.0_Chr5g0040671 Rosa chinensis HOM05D004902 ORTHO05D006603 6.3e-284 980.3 591 84.3
GSVIVG01037683001 Vitis vinifera HOM05D004902 ORTHO05D006603 2.4e-283 978.4 589 83.4
Manes.03G132000 Manihot esculenta HOM05D004902 ORTHO05D006603 3.1e-283 978.0 571 85.6
MELO3C013152.2 Cucumis melo HOM05D004902 ORTHO05D006603 5.3e-283 977.2 572 85.1
Ciclev10007818m.g Citrus clementina HOM05D004902 ORTHO05D006603 9.1e-283 976.5 573 85.3
ClCG09G010930 Citrullus lanatus HOM05D004902 ORTHO05D006603 4.5e-282 974.2 572 84.6
Gohir.A11G067600 Gossypium hirsutum HOM05D004902 ORTHO05D006603 4.5e-282 974.2 580 84.8
Gorai.007G076800 Gossypium raimondii HOM05D004902 ORTHO05D006603 3.8e-281 971.1 581 84.5
Gohir.D11G071500 Gossypium hirsutum HOM05D004902 ORTHO05D006603 6.5e-281 970.3 580 84.3
CiPaw.11G191900 Carya illinoinensis HOM05D004902 ORTHO05D006603 1.5e-280 969.1 598 82.3
MSTRG.14441 Avicennia marina HOM05D004902 ORTHO05D006603 3.2e-280 968.0 577 83.9
CSS0007833 Camellia sinensis var. sinensis HOM05D004902 ORTHO05D006603 5.5e-280 967.2 549 87.1
Migut.M01740 Erythranthe guttata HOM05D004902 ORTHO05D006603 7.2e-280 966.8 576 82.8
CSS0000094 Camellia sinensis var. sinensis HOM05D004902 ORTHO05D006603 9.4e-280 966.5 549 87.2
MSTRG.12985 Avicennia marina HOM05D004902 ORTHO05D006603 2.7e-279 964.9 575 83.8
TAR362G0117 Trochodendron aralioides HOM05D004902 ORTHO05D006603 3.6e-279 964.5 588 82.7
FAN18G4155 Fragaria x ananassa HOM05D004902 ORTHO05D006603 6.1e-279 963.8 595 82.2
CANSAT11G1621 Cannabis sativa HOM05D004902 ORTHO05D006603 8.0e-279 963.4 587 82.3
Sed0009199 Sechium edule HOM05D004902 ORTHO05D006603 1.4e-278 962.6 598 81.4
Solyc07g064810.3 Solanum lycopersicum HOM05D004902 ORTHO05D006603 1.4e-278 962.6 580 83.8
Thecc.09G123200 Theobroma cacao HOM05D004902 ORTHO05D006603 1.4e-278 962.6 584 83.7
Sopen07g033000 Solanum pennellii HOM05D004902 ORTHO05D006603 3.0e-278 961.4 580 83.8
Atru.chr2.3483 Acer truncatum HOM05D004902 ORTHO05D006603 4.0e-278 961.1 572 85.1
Oeu062577.2 Olea europaea HOM05D004902 ORTHO05D006603 5.2e-278 960.7 565 85.8
PGSC0003DMG400022211 Solanum tuberosum HOM05D004902 ORTHO05D006603 6.8e-278 960.3 580 83.8
Cfa020314 Carpinus fangiana HOM05D004902 ORTHO05D006603 1.5e-277 959.1 595 81.8
SGA_v2.0_scaffold172G39008 Striga asiatica HOM05D004902 ORTHO05D006603 3.4e-277 958.0 580 83.3
THA.LOC104811618 Tarenaya hassleriana HOM05D004902 ORTHO05D006603 4.4e-277 957.6 578 83.6
Actinidia10742 Actinidia chinensis HOM05D004902 ORTHO05D006603 1.3e-276 956.1 603 81.4
Eucgr.F00742 Eucalyptus grandis HOM05D004902 ORTHO05D006603 1.3e-276 956.1 582 81.6
FAN04G1963 Fragaria x ananassa HOM05D004902 ORTHO05D006603 1.3e-276 956.1 600 81.7
Duzib264G0382 Durio zibethinus HOM05D004902 ORTHO05D006603 1.7e-276 955.7 575 83.7
FAN13G3021 Fragaria x ananassa HOM05D004902 ORTHO05D006603 1.7e-276 955.7 609 80.3
Lj1A876G36 Lonicera japonica HOM05D004902 ORTHO05D006603 2.2e-276 955.3 553 85.4
CARHR234510 Cardamine hirsuta HOM05D004902 ORTHO05D006603 3.7e-276 954.5 574 82.8
CAN.G337.72 Capsicum annuum HOM05D004902 ORTHO05D006603 4.8e-276 954.1 564 84.4
Carub.0007s1395 Capsella rubella HOM05D004902 ORTHO05D006603 1.1e-275 953.0 572 82.7
Thhalv10024744m.g Eutrema salsugineum HOM05D004902 ORTHO05D006603 1.4e-275 952.6 582 81.6
PGR083G1168 Punica granatum HOM05D004902 ORTHO05D006603 2.4e-275 951.8 575 82.6
Potri.001G267400 Populus trichocarpa HOM05D004902 ORTHO05D006603 5.4e-275 950.7 584 82.2
Sp7g24850 Schrenkiella parvula HOM05D004902 ORTHO05D006603 9.1e-275 949.9 573 82.5
C01p23080 Brassica napus HOM05D004902 ORTHO05D006603 1.2e-274 949.5 572 82.5
C04p45770 Brassica napus HOM05D004902 ORTHO05D006603 2.0e-274 948.7 573 82.5
Sc02g0003710 Simmondsia chinensis HOM05D004902 ORTHO05D006603 2.0e-274 948.7 545 85.1
Potri.009G061700 Populus trichocarpa HOM05D004902 ORTHO05D006603 3.5e-274 948.0 572 82.7
Aa31LG3G11010 Aethionema arabicum HOM05D004902 ORTHO05D006603 5.9e-274 947.2 576 82.8
BolC4t26162H Brassica oleracea HOM05D004902 ORTHO05D006603 7.7e-274 946.8 575 82.4
BcaB06g27301 Brassica carinata HOM05D004902 ORTHO05D006603 1.0e-273 946.4 573 82.2
AL7G25950 Arabidopsis lyrata HOM05D004902 ORTHO05D006603 1.7e-273 945.7 587 81.3
Aqoxy5G00324 Aquilegia oxysepala HOM05D004902 ORTHO05D006603 2.9e-273 944.9 548 85.2
AT4G26900 Arabidopsis thaliana HOM05D004902 ORTHO05D006603 1.1e-272 943.0 576 81.6
BolC1t02242H Brassica oleracea HOM05D004902 ORTHO05D006603 1.5e-272 942.6 574 82.1
A04p12110 Brassica napus HOM05D004902 ORTHO05D006603 3.2e-272 941.4 576 81.8
Hund26666 Selenicereus undatus HOM05D004902 ORTHO05D006603 1.6e-271 939.1 593 79.4
HanXRQChr08g0233501 Helianthus annuus HOM05D004902 ORTHO05D006603 1.4e-270 936.0 567 82.9
HanXRQChr05g0159411 Helianthus annuus HOM05D004902 ORTHO05D006603 6.8e-270 933.7 548 84.5
COL.COLO4_19537 Corchorus olitorius HOM05D004902 ORTHO05D006603 1.5e-269 932.6 587 80.9
CDE02G3624 Ceratophyllum demersum HOM05D004902 ORTHO05D006603 2.2e-268 928.7 577 79.9
Lsat_1_v5_gn_5_3021 Lactuca sativa HOM05D004902 ORTHO05D006603 3.5e-266 921.4 548 82.7
ATR0736G184 Amborella trichopoda HOM05D004902 ORTHO05D006603 5.9e-266 920.6 572 82.0
ECA246G3742 Erigeron canadensis HOM05D004902 ORTHO05D006603 1.0e-265 919.8 582 79.9
BcaNung03568 Brassica carinata HOM05D004902 ORTHO05D006603 6.6e-265 917.1 572 80.4
Nn8g38868 Nelumbo nucifera HOM05D004902 ORTHO05D006603 1.9e-264 915.6 565 81.4
BraA04t16876Z Brassica rapa HOM05D004902 ORTHO05D006603 5.6e-264 914.1 604 78.3
Oeu013136.2 Olea europaea HOM05D004902 ORTHO05D006603 2.8e-263 911.8 583 80.4
FAN08G0007 Fragaria x ananassa HOM05D004902 ORTHO05D006603 2.6e-261 905.2 580 79.7
EL10Ac1g01638 Beta vulgaris HOM05D004902 ORTHO05D006603 4.1e-259 897.9 581 77.3
AUR62026758 Chenopodium quinoa HOM05D004902 ORTHO05D006603 2.0e-258 895.6 602 75.4
Haze_09705 Corylus avellana HOM05D004902 ORTHO05D006603 2.0e-258 895.6 593 78.2
Gorai.011G209600 Gossypium raimondii HOM05D004902 ORTHO05D006603 3.9e-257 891.3 575 79.8
Rhsim06G0219700 Rhododendron simsii HOM05D004902 ORTHO05D006603 2.5e-256 888.6 584 76.9
Gohir.D10G186800 Gossypium hirsutum HOM05D004902 ORTHO05D006603 3.6e-255 884.8 575 79.3
HPP92_013494 Vanilla planifolia HOM05D004902 ORTHO05D006603 1.4e-254 882.9 581 75.2
HPP92_026047 Vanilla planifolia HOM05D004902 ORTHO05D006603 2.2e-252 875.5 575 75.5
FvH4_5g29730 Fragaria vesca HOM05D004902 ORTHO05D006603 2.5e-248 862.1 479 88.3
Sabra16G0163900 Salix brachista HOM05D004902 ORTHO05D006603 2.8e-247 858.6 638 71.8
vmacro02220 Vaccinium macrocarpon HOM05D004902 ORTHO05D006603 1.1e-246 856.7 624 72.4
Os03g0256400 Oryza sativa ssp. japonica HOM05D004902 ORTHO05D006603 1.2e-245 853.2 565 74.9
Gohir.A10G179900 Gossypium hirsutum HOM05D004902 ORTHO05D006603 9.9e-245 850.1 592 75.8
Peaxi162Scf00235g00424 Petunia axillaris HOM05D004902 ORTHO05D006603 2.9e-244 848.6 576 75.7
PSO210G2842 Papaver somniferum HOM05D004902 ORTHO05D006603 1.4e-243 846.3 577 75.4
Ah.13g076200 Amaranthus hybridus HOM05D004902 ORTHO05D006603 1.9e-243 845.9 583 75.8
CsaV3_7G021940 Cucumis sativus L. HOM05D004902 ORTHO05D006603 1.9e-243 845.9 496 84.3
PSO832G3378 Papaver somniferum HOM05D004902 ORTHO05D006603 5.4e-243 844.3 577 75.2
AagrBONN_evm.TU.Sc2ySwM_117.3547 Anthoceros agrestis HOM05D004902 ORTHO05D006603 1.9e-240 835.9 547 74.6
Mapoly0071s0086 Marchantia polymorpha HOM05D004902 ORTHO05D006603 2.8e-231 805.4 548 72.1
DCAR_022578 Daucus carota HOM05D004902 ORTHO05D006603 8.1e-231 803.9 548 75.0
Nitab4.5_0022774g0010 Nicotiana tabacum HOM05D004902 ORTHO05D006603 3.1e-230 802.0 463 84.7
Hma1.2p1_0036F.1_g023430 Hydrangea macrophylla HOM05D004902 ORTHO05D006603 1.3e-228 796.6 439 87.7
Pp3c1_20280 Physcomitrium patens HOM05D004902 ORTHO05D006603 3.5e-226 788.5 541 71.9
SMO119G0352 Selaginella moellendorffii HOM05D004902 ORTHO05D006603 2.5e-224 782.3 532 72.2
CBR_g4356 Chara braunii HOM05D004902 ORTHO05D006603 9.0e-222 773.9 590 66.1
unitig_85.g27329 Utricularia gibba HOM05D004902 ORTHO05D006603 8.4e-212 740.7 559 69.1
AUR62013514 Chenopodium quinoa HOM05D004902 ORTHO05D006603 2.5e-208 729.2 548 68.8
CAN.G677.16 Capsicum annuum HOM05D004902 ORTHO05D006603 4.1e-198 695.3 554 68.4
Nitab4.5_0013139g0010 Nicotiana tabacum HOM05D004902 ORTHO05D006603 4.2e-195 685.3 405 84.9
MCO02G311 Micromonas commoda HOM05D004902 ORTHO05D006603 1.1e-187 660.6 542 61.6
MD11G1214000 Malus domestica HOM05D004902 ORTHO05D006603 3.7e-167 592.4 341 87.4
A01p18110 Brassica napus HOM05D004902 ORTHO05D006603 8.2e-167 591.3 554 59.9
HanXRQChr08g0233821 Helianthus annuus HOM05D004902 ORTHO05D006603 1.2e-165 587.4 410 74.9
PRCOL_00006765 Prasinoderma coloniale HOM05D004902 ORTHO05D006603 2.9e-164 582.8 510 59.2
Zm00001eb011150 Zea mays HOM05D004902 ORTHO05D006603 2.0e-160 570.1 356 80.9
Cfa025092 Carpinus fangiana HOM05D004902 ORTHO05D006603 5.9e-157 558.5 550 53.8
Cre11.g481500 Chlamydomonas reinhardtii HOM05D004902 ORTHO05D006603 3.4e-136 489.6 566 50.2
Cpa.g.sc12.277 Carica papaya HOM05D004902 ORTHO05D006603 1.1e-131 474.6 257 91.4
Cpa.g.c34168 Carica papaya HOM05D004902 ORTHO05D006603 2.2e-95 354.0 234 74.4
MD11G1213900 Malus domestica HOM05D004902 ORTHO05D006603 2.7e-93 347.1 188 86.2
Glyma.08G323300 Glycine max HOM05D004902 ORTHO05D006603 4.5e-80 303.1 208 75.0
Lsat_1_v5_gn_3_2301 Lactuca sativa HOM05D004902 ORTHO05D006603 4.7e-69 266.5 400 43.8
VMungo0540G1125 Vigna mungo HOM05D004902 ORTHO05D006603 3.0e-60 237.3 149 85.2
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 5.3e-57 226.5 198 58.1
SEGI_16435 Sequoiadendron giganteum HOM05D004902 ORTHO05D006603 3.2e-46 190.7 116 81.9
RcHm_v2.0_Chr4g0412471 Rosa chinensis HOM05D004902 ORTHO05D006603 3.0e-44 184.1 153 64.7
SEGI_31768 Sequoiadendron giganteum HOM05D004902 ORTHO05D006603 6.6e-39 166.4 118 65.3
BraA01t01766Z Brassica rapa HOM05D004902 ORTHO05D006603 7.2e-38 162.9 102 77.5
Glyma.08G319400 Glycine max HOM05D004902 ORTHO05D029739 1.1e-30 139.0 76 93.4
Aqoxy84s005 Aquilegia oxysepala HOM05D004902 ORTHO05D038539 1.9e-30 138.3 314 32.5
Lsat_1_v5_gn_0_44000 Lactuca sativa HOM05D004902 ORTHO05D038539 4.0e-28 130.6 312 34.3
BcaNung03560 Brassica carinata HOM05D004902 ORTHO05D006603 6.2e-21 106.7 57 86.0
FvH4_6g25500 Fragaria vesca HOM05D000003 ORTHO05D000007 2.9e-18 97.8 58 81.0
TPR.G39977 Trifolium pratense HOM05D004902 ORTHO05D006603 6.6e-15 86.7 43 90.7
Ah.01g018890 Amaranthus hybridus HOM05D004902 ORTHO05D006603 1.2e-13 82.4 154 42.2
Lsat_1_v5_gn_3_69341 Lactuca sativa HOM05D004902 ORTHO05D006603 2.1e-13 81.6 126 42.9
Lsat_1_v5_gn_4_11281 Lactuca sativa HOM05D004902 ORTHO05D006603 6.2e-13 80.1 107 46.7
SEGI_35364 Sequoiadendron giganteum HOM05D004902 ORTHO05D025756 1.7e-10 72.0 45 66.7
HanXRQChr08g0233831 Helianthus annuus HOM05D004902 ORTHO05D006603 2.2e-10 71.6 42 76.2
TWI38G0888 Tripterygium wilfordii HOM05D004902 ORTHO05D029739 1.1e-09 69.3 70 61.4
BcaNung03565 Brassica carinata HOM05D004902 ORTHO05D006603 5.4e-09 67.0 70 57.1
RcHm_v2.0_Chr5g0040621 Rosa chinensis HOM05D004902 ORTHO05D006603 6.0e-08 63.5 37 83.8
GSVIVG01021644001 Vitis vinifera HOM05D004902 ORTHO05D024725 1.7e-07 62.0 35 74.3
Lsat_1_v5_gn_0_720 Lactuca sativa HOM05D004902 ORTHO05D029739 1.5e-06 58.9 55 58.2
Lsat_1_v5_gn_2_18401 Lactuca sativa HOM05D004902 ORTHO05D233888 3.3e-06 57.8 112 37.5


User provided reference genes

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