Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G086800 Glycine max HOM05D004024 ORTHO05D004639 1.3e-61 239.6 123 100.0
Glyma.18G089100 Glycine max HOM05D004024 ORTHO05D004639 2.4e-55 218.8 115 97.4
Glyma.18G087600 Glycine max HOM05D004024 ORTHO05D004639 1.6e-51 206.1 107 98.1
Phvul.006G049300 Phaseolus vulgaris HOM05D004024 ORTHO05D004639 7.8e-51 203.8 119 85.7
Glyma.08G323000 Glycine max HOM05D004024 ORTHO05D004639 2.1e-43 179.1 103 84.5
VMungo0540G1873 Vigna mungo HOM05D004024 ORTHO05D004639 7.9e-43 177.2 102 87.3
Lalb_Chr20g0116251 Lupinus albus HOM05D004024 ORTHO05D004639 2.8e-40 168.7 106 79.2
Ca_06362_v3 Cicer arietinum L. HOM05D004024 ORTHO05D004639 1.4e-39 166.4 111 73.9
arahy.Tifrunner.gnm1.ann1.01HUHH Arachis hypogaea HOM05D004024 ORTHO05D004639 1.8e-39 166.0 106 76.4
arahy.Tifrunner.gnm1.ann1.NPZ9GD Arachis hypogaea HOM05D004024 ORTHO05D004639 1.8e-39 166.0 106 76.4
Glyma.02G296700 Glycine max HOM05D004024 ORTHO05D004639 4.0e-39 164.9 111 73.9
SalBow8G0703 Salvia bowleyana HOM05D004024 ORTHO05D004639 4.0e-39 164.9 111 72.1
TPR.G31724 Trifolium pratense HOM05D004024 ORTHO05D004639 5.3e-39 164.5 111 71.2
CSS0029510 Camellia sinensis var. sinensis HOM05D004024 ORTHO05D004639 9.0e-39 163.7 111 73.0
CSS0039941 Camellia sinensis var. sinensis HOM05D004024 ORTHO05D004639 9.0e-39 163.7 111 73.0
SalBow8G4424 Salvia bowleyana HOM05D004024 ORTHO05D004639 9.0e-39 163.7 111 72.1
Lj6g0021305 Lotus japonicus HOM05D004024 ORTHO05D004639 1.5e-38 162.9 115 71.3
CiPaw.11G199900 Carya illinoinensis HOM05D004024 ORTHO05D004639 2.0e-38 162.5 111 72.1
Hma1.2p1_0036F.1_g022840 Hydrangea macrophylla HOM05D004024 ORTHO05D004639 2.0e-38 162.5 111 70.3
LjContig00272g0016413 Lotus japonicus HOM05D004024 ORTHO05D004639 2.0e-38 162.5 103 77.7
Psat0s4319g0040 Pisum sativum HOM05D004024 ORTHO05D004639 2.0e-38 162.5 112 71.4
VMungo0647G2266 Vigna mungo HOM05D004024 ORTHO05D004639 2.0e-38 162.5 106 78.3
Eucgr.F03519 Eucalyptus grandis HOM05D004024 ORTHO05D004639 2.6e-38 162.2 112 70.5
Glyma.14G016900 Glycine max HOM05D004024 ORTHO05D004639 2.6e-38 162.2 111 73.0
Dinv40827 Davidia involucrata HOM05D004024 ORTHO05D004639 3.4e-38 161.8 113 71.7
Migut.H01776 Erythranthe guttata HOM05D004024 ORTHO05D004639 4.5e-38 161.4 112 71.4
Phvul.008G274600 Phaseolus vulgaris HOM05D004024 ORTHO05D004639 5.8e-38 161.0 106 77.4
TAR626G0012 Trochodendron aralioides HOM05D004024 ORTHO05D004639 5.8e-38 161.0 111 70.3
Prupe.4G231300 Prunus persica HOM05D004024 ORTHO05D004639 7.6e-38 160.6 99 79.8
MSTRG.6976 Avicennia marina HOM05D004024 ORTHO05D004639 9.9e-38 160.2 113 70.8
GSVIVG01037765001 Vitis vinifera HOM05D004024 ORTHO05D004639 9.9e-38 160.2 111 70.3
Medtr5g094300 Medicago truncatula HOM05D004024 ORTHO05D004639 1.3e-37 159.8 111 71.2
MELO3C014143.2 Cucumis melo HOM05D004024 ORTHO05D004639 3.8e-37 158.3 102 76.5
MD03G1189900 Malus domestica HOM05D004024 ORTHO05D004639 3.8e-37 158.3 113 71.7
FAN25G0894 Fragaria x ananassa HOM05D004024 ORTHO05D004639 6.4e-37 157.5 113 69.0
Gohir.A13G135400 Gossypium hirsutum HOM05D004024 ORTHO05D004639 6.4e-37 157.5 112 71.4
Gohir.D13G139900 Gossypium hirsutum HOM05D004024 ORTHO05D004639 6.4e-37 157.5 112 71.4
Gorai.013G156500 Gossypium raimondii HOM05D004024 ORTHO05D004639 6.4e-37 157.5 112 71.4
QL08p008635 Quercus lobata HOM05D004024 ORTHO05D004639 6.4e-37 157.5 99 78.8
Sed0002582 Sechium edule HOM05D004024 ORTHO05D004639 8.4e-37 157.1 98 77.6
Lj8A175G77 Lonicera japonica HOM05D004024 ORTHO05D004639 1.1e-36 156.8 112 68.8
Manes.03G134000 Manihot esculenta HOM05D004024 ORTHO05D004639 1.1e-36 156.8 106 73.6
Thecc.07G023700 Theobroma cacao HOM05D004024 ORTHO05D004639 1.1e-36 156.8 107 74.8
Manes.15G064200 Manihot esculenta HOM05D004024 ORTHO05D004639 1.4e-36 156.4 101 76.2
PGR083G0593 Punica granatum HOM05D004024 ORTHO05D004639 1.4e-36 156.4 101 75.2
Actinidia35382 Actinidia chinensis HOM05D004024 ORTHO05D004639 1.9e-36 156.0 113 69.9
arahy.Tifrunner.gnm1.ann1.M3IDM0 Arachis hypogaea HOM05D004024 ORTHO05D004639 1.9e-36 156.0 113 69.0
FAN11G0159 Fragaria x ananassa HOM05D004024 ORTHO05D004639 1.9e-36 156.0 113 68.1
Lalb_Chr06g0174041 Lupinus albus HOM05D004024 ORTHO05D004639 1.9e-36 156.0 111 66.7
MD11G1206200 Malus domestica HOM05D004024 ORTHO05D004639 1.9e-36 156.0 99 76.8
FAN21G2056 Fragaria x ananassa HOM05D004024 ORTHO05D004639 2.4e-36 155.6 113 68.1
Gohir.A01G086400 Gossypium hirsutum HOM05D004024 ORTHO05D004639 2.4e-36 155.6 107 72.9
Gorai.002G095600 Gossypium raimondii HOM05D004024 ORTHO05D004639 2.4e-36 155.6 107 72.9
RcHm_v2.0_Chr5g0042411 Rosa chinensis HOM05D004024 ORTHO05D004639 2.4e-36 155.6 113 69.9
Cfa020239 Carpinus fangiana HOM05D004024 ORTHO05D004639 3.2e-36 155.2 97 77.3
Peaxi162Scf00285g00929 Petunia axillaris HOM05D004024 ORTHO05D004639 3.2e-36 155.2 111 71.2
CANSAT11G0326 Cannabis sativa HOM05D004024 ORTHO05D004639 4.2e-36 154.8 112 67.9
Sabra16G0237800 Salix brachista HOM05D004024 ORTHO05D004639 4.2e-36 154.8 108 74.1
SGA_v2.0_scaffold8G04376 Striga asiatica HOM05D004024 ORTHO05D004639 4.2e-36 154.8 111 68.5
Cc05_g14570 Coffea canephora HOM05D004024 ORTHO05D004639 5.5e-36 154.5 106 71.7
Nitab4.5_0001160g0210 Nicotiana tabacum HOM05D004024 ORTHO05D004639 5.5e-36 154.5 110 69.1
Nitab4.5_0008232g0030 Nicotiana tabacum HOM05D004024 ORTHO05D004639 5.5e-36 154.5 110 69.1
Sopen07g033420 Solanum pennellii HOM05D004024 ORTHO05D004639 5.5e-36 154.5 107 71.0
Gohir.D01G072600 Gossypium hirsutum HOM05D004024 ORTHO05D004639 7.1e-36 154.1 107 72.0
CAN.G337.35 Capsicum annuum HOM05D004024 ORTHO05D004639 9.3e-36 153.7 107 72.0
Potri.001G360300 Populus trichocarpa HOM05D004024 ORTHO05D004639 1.2e-35 153.3 101 75.2
PGSC0003DMG401022191 Solanum tuberosum HOM05D004024 ORTHO05D004639 1.2e-35 153.3 107 72.0
Actinidia39078 Actinidia chinensis HOM05D004024 ORTHO05D004639 1.6e-35 152.9 105 71.4
EL10Ac4g07627 Beta vulgaris HOM05D004024 ORTHO05D004639 1.6e-35 152.9 111 65.8
Duzib268G0935 Durio zibethinus HOM05D004024 ORTHO05D004639 1.6e-35 152.9 107 73.8
Sc07g0002950 Simmondsia chinensis HOM05D004024 ORTHO05D004639 1.6e-35 152.9 112 65.2
unitig_85.g27339 Utricularia gibba HOM05D004024 ORTHO05D004639 1.6e-35 152.9 108 67.6
DCAR_013207 Daucus carota HOM05D001671 ORTHO05D004639 2.1e-35 152.5 111 67.6
MBI16_g42313_MAGBIO Magnolia biondii HOM05D004024 ORTHO05D004639 2.1e-35 152.5 99 74.7
Oeu054320.1 Olea europaea HOM05D004024 ORTHO05D004639 2.1e-35 152.5 99 75.8
Potri.011G088500 Populus trichocarpa HOM05D004024 ORTHO05D004639 2.1e-35 152.5 101 75.2
PGR031G2461 Punica granatum HOM05D004024 ORTHO05D004639 2.1e-35 152.5 97 76.3
Solyc07g065200.3 Solanum lycopersicum HOM05D004024 ORTHO05D004639 2.1e-35 152.5 107 71.0
BcaC09g52251 Brassica carinata HOM05D004024 ORTHO05D004639 3.5e-35 151.8 108 67.6
A01p17920 Brassica napus HOM05D004024 ORTHO05D004639 3.5e-35 151.8 108 67.6
BraA01t01747Z Brassica rapa HOM05D004024 ORTHO05D004639 3.5e-35 151.8 108 67.6
Carub.0008s1586 Capsella rubella HOM05D004024 ORTHO05D004639 3.5e-35 151.8 106 67.0
AL8G31060 Arabidopsis lyrata HOM05D004024 ORTHO05D004639 4.6e-35 151.4 106 66.0
AT5G55510 Arabidopsis thaliana HOM05D004024 ORTHO05D004639 4.6e-35 151.4 106 66.0
BcaB03g12503 Brassica carinata HOM05D004024 ORTHO05D004639 4.6e-35 151.4 106 67.9
FAN16G1414 Fragaria x ananassa HOM05D004024 ORTHO05D004639 4.6e-35 151.4 119 65.5
HanXRQChr05g0159961 Helianthus annuus HOM05D004024 ORTHO05D004639 6.0e-35 151.0 113 66.4
Lsat_1_v5_gn_5_3461 Lactuca sativa HOM05D004024 ORTHO05D004639 6.0e-35 151.0 99 76.8
BcaC09g50630 Brassica carinata HOM05D004024 ORTHO05D004639 7.9e-35 150.6 106 67.9
C01p22720 Brassica napus HOM05D004024 ORTHO05D004639 7.9e-35 150.6 106 67.9
BolC1t02201H Brassica oleracea HOM05D004024 ORTHO05D004639 7.9e-35 150.6 106 67.9
Oeu034550.1 Olea europaea HOM05D004024 ORTHO05D004639 7.9e-35 150.6 99 74.7
Sp7g24640 Schrenkiella parvula HOM05D004024 ORTHO05D004639 7.9e-35 150.6 106 67.9
CARHR268820 Cardamine hirsuta HOM05D004024 ORTHO05D004639 1.3e-34 149.8 106 66.0
Sp6g17400 Schrenkiella parvula HOM05D004024 ORTHO05D004639 1.3e-34 149.8 106 66.0
HPP92_014278 Vanilla planifolia HOM05D004024 ORTHO05D004639 1.8e-34 149.4 104 69.2
HPP92_024489 Vanilla planifolia HOM05D004024 ORTHO05D004639 1.8e-34 149.4 104 69.2
Aqoxy1G04026 Aquilegia oxysepala HOM05D004024 ORTHO05D004639 2.3e-34 149.1 108 67.6
HanXRQChr11g0324641 Helianthus annuus HOM05D004024 ORTHO05D004639 2.3e-34 149.1 114 66.7
AL7G26210 Arabidopsis lyrata HOM05D004024 ORTHO05D004639 3.0e-34 148.7 99 70.7
AT4G26670 Arabidopsis thaliana HOM05D004024 ORTHO05D004639 3.0e-34 148.7 99 70.7
BcaC01g06372 Brassica carinata HOM05D004024 ORTHO05D004639 3.0e-34 148.7 111 64.0
A03p14010 Brassica napus HOM05D004024 ORTHO05D004639 3.0e-34 148.7 99 69.7
DCAR_017098 Daucus carota HOM05D004024 ORTHO05D004639 3.0e-34 148.7 112 67.0
Migut.M01685 Erythranthe guttata HOM05D004024 ORTHO05D004639 3.0e-34 148.7 105 69.5
TWI39G0215 Tripterygium wilfordii HOM05D004024 ORTHO05D004639 3.0e-34 148.7 108 71.3
Aa31LG3G11450 Aethionema arabicum HOM05D004024 ORTHO05D004639 3.9e-34 148.3 100 70.0
Aa31LG5G12280 Aethionema arabicum HOM05D004024 ORTHO05D004639 3.9e-34 148.3 99 70.7
BolC3t14065H Brassica oleracea HOM05D004024 ORTHO05D004639 3.9e-34 148.3 101 68.3
CARHR234270 Cardamine hirsuta HOM05D004024 ORTHO05D004639 3.9e-34 148.3 99 70.7
Haze_09776 Corylus avellana HOM05D004024 ORTHO05D004639 3.9e-34 148.3 114 67.5
ECA246G1790 Erigeron canadensis HOM05D004024 ORTHO05D004639 3.9e-34 148.3 102 69.6
arahy.Tifrunner.gnm1.ann1.IM9LRW Arachis hypogaea HOM05D004024 ORTHO05D004639 5.1e-34 147.9 139 57.6
Rhsim06G0225900 Rhododendron simsii HOM05D004024 ORTHO05D004639 5.1e-34 147.9 111 62.2
Carub.0007s1420 Capsella rubella HOM05D004024 ORTHO05D004639 6.7e-34 147.5 99 69.7
CDE05G1543 Ceratophyllum demersum HOM05D004024 ORTHO05D004639 6.7e-34 147.5 112 62.5
FAN25G3281 Fragaria x ananassa HOM05D004024 ORTHO05D004639 6.7e-34 147.5 128 60.9
A10p12590 Brassica napus HOM05D004024 ORTHO05D004639 8.7e-34 147.1 101 67.3
CDE04G2600 Ceratophyllum demersum HOM05D004024 ORTHO05D004639 8.7e-34 147.1 111 64.9
Gohir.A11G277566 Gossypium hirsutum HOM05D004024 ORTHO05D004639 8.7e-34 147.1 107 69.2
Hund23145 Selenicereus undatus HOM05D004024 ORTHO05D004639 8.7e-34 147.1 111 62.2
TWI38G2360 Tripterygium wilfordii HOM05D004024 ORTHO05D004639 8.7e-34 147.1 96 76.0
BcaB08g35907 Brassica carinata HOM05D004024 ORTHO05D001781 1.1e-33 146.7 99 68.7
C03p16450 Brassica napus HOM05D004024 ORTHO05D004639 1.1e-33 146.7 99 68.7
Ciclev10009483m.g Citrus clementina HOM05D004024 ORTHO05D004639 1.1e-33 146.7 113 66.4
Ah.06g181090 Amaranthus hybridus HOM05D004024 ORTHO05D004639 1.5e-33 146.4 112 62.5
C09p46180 Brassica napus HOM05D004024 ORTHO05D004639 1.5e-33 146.4 99 68.7
BraA10t43363Z Brassica rapa HOM05D004024 ORTHO05D004639 1.5e-33 146.4 99 68.7
COL.COLO4_09773 Corchorus olitorius HOM05D004024 ORTHO05D004639 1.5e-33 146.4 101 70.3
CsaV3_3G004470 Cucumis sativus L. HOM05D004024 ORTHO05D004639 1.5e-33 146.4 102 70.6
THA.LOC104811646 Tarenaya hassleriana HOM05D004024 ORTHO05D004639 1.9e-33 146.0 99 68.7
CDE02G1960 Ceratophyllum demersum HOM05D004024 ORTHO05D004639 4.3e-33 144.8 112 61.6
BolC9t57483H Brassica oleracea HOM05D004024 ORTHO05D004639 5.6e-33 144.4 98 68.4
Os03g0194500 Oryza sativa ssp. japonica HOM05D004024 ORTHO05D004639 5.6e-33 144.4 114 63.2
ATR0712G010 Amborella trichopoda HOM05D004024 ORTHO05D004639 9.6e-33 143.7 97 72.2
Rhsim04G0015500 Rhododendron simsii HOM05D001671 ORTHO05D004639 9.6e-33 143.7 99 69.7
ClCG10G004660 Citrullus lanatus HOM05D004024 ORTHO05D004639 1.6e-32 142.9 130 59.2
Atru.chr2.3628 Acer truncatum HOM05D004024 ORTHO05D004639 4.8e-32 141.4 101 65.3
vmacro11567 Vaccinium macrocarpon HOM05D004024 ORTHO05D004639 6.2e-32 141.0 111 61.3
Actinidia05039 Actinidia chinensis HOM05D004024 ORTHO05D004639 1.4e-31 139.8 110 61.8
Gorai.007G311300 Gossypium raimondii HOM05D004024 ORTHO05D004639 3.1e-31 138.7 106 67.9
Zm00001eb401140 Zea mays HOM05D004024 ORTHO05D004639 4.0e-31 138.3 95 70.5
BraA03t10700Z Brassica rapa HOM05D004024 ORTHO05D004639 5.3e-31 137.9 111 61.3
PSO210G2058 Papaver somniferum HOM05D004024 ORTHO05D004639 5.3e-31 137.9 115 60.0
Zm00001eb004090 Zea mays HOM05D004024 ORTHO05D004639 6.9e-31 137.5 113 59.3
PSO302G0156 Papaver somniferum HOM05D004024 ORTHO05D004639 3.4e-30 135.2 102 64.7
MD00G1122600 Malus domestica HOM05D004024 ORTHO05D004639 1.0e-29 133.7 112 64.3
AUR62015937 Chenopodium quinoa HOM05D004024 ORTHO05D004639 1.3e-29 133.3 111 57.7
Cpa.g.sc12.205 Carica papaya HOM05D004024 ORTHO05D004639 2.2e-29 132.5 104 66.3
SEGI_05638 Sequoiadendron giganteum HOM05D004024 ORTHO05D004639 2.9e-29 132.1 100 62.0
Zm00001eb264400 Zea mays HOM05D004024 ORTHO05D004639 4.9e-29 131.3 97 64.9
Os12g0514900 Oryza sativa ssp. japonica HOM05D004024 ORTHO05D004639 8.4e-29 130.6 97 62.9
Zm00001eb410970 Zea mays HOM05D004024 ORTHO05D004639 2.5e-28 129.0 95 65.3
Pp3c23_11700 Physcomitrium patens HOM05D004024 ORTHO05D004639 1.3e-26 123.2 103 59.2
AUR62040672 Chenopodium quinoa HOM05D004024 ORTHO05D004639 3.0e-26 122.1 97 62.9
Mapoly0060s0085 Marchantia polymorpha HOM05D004024 ORTHO05D004639 3.9e-26 121.7 111 54.1
AagrBONN_evm.TU.Sc2ySwM_344.687 Anthoceros agrestis HOM05D000165 ORTHO05D005214 5.1e-26 121.3 106 53.8
Pp3c24_12690 Physcomitrium patens HOM05D004024 ORTHO05D004639 8.7e-26 120.6 117 53.0
Zm00001eb027670 Zea mays HOM05D004024 ORTHO05D004639 7.4e-25 117.5 102 53.9
SGA_v2.0_scaffold478G52230 Striga asiatica HOM05D004024 ORTHO05D004639 2.4e-23 112.5 111 53.2
FvH4_3g23900 Fragaria vesca HOM05D004024 ORTHO05D004639 3.1e-23 112.1 65 84.6
Thhalv10026251m.g Eutrema salsugineum HOM05D004024 ORTHO05D004639 5.3e-23 111.3 79 69.6
Nn1g07427 Nelumbo nucifera HOM05D004024 ORTHO05D004639 9.0e-23 110.5 70 77.1
VMungo1127G1392 Vigna mungo HOM05D004024 ORTHO05D004639 1.2e-22 110.2 115 56.5
Nn1g03268 Nelumbo nucifera HOM05D004024 ORTHO05D004639 1.5e-22 109.8 70 75.7
CBR_g19503 Chara braunii HOM05D004024 ORTHO05D004639 4.5e-22 108.2 94 53.2
arahy.Tifrunner.gnm1.ann1.4LJY9R Arachis hypogaea HOM05D004024 ORTHO05D004639 1.3e-21 106.7 113 52.2
SMO115G0139 Selaginella moellendorffii HOM05D004024 ORTHO05D004639 8.5e-21 104.0 105 47.6
COL.COLO4_09508 Corchorus olitorius HOM05D002899 ORTHO05D003850 6.1e-19 97.8 102 54.9
MD05G1006500 Malus domestica HOM05D004024 ORTHO05D004639 1.7e-16 89.7 63 66.7
Hund01922 Selenicereus undatus HOM05D004024 ORTHO05D004639 2.8e-16 89.0 109 42.2
CARHR044370 Cardamine hirsuta HOM05D004024 ORTHO05D004639 2.6e-14 82.4 64 62.5
arahy.Tifrunner.gnm1.ann1.AMB9RJ Arachis hypogaea HOM05D004024 ORTHO05D004639 8.5e-13 77.4 140 40.0
Sabra11G0074500 Salix brachista HOM05D004024 ORTHO05D004639 1.9e-12 76.3 71 62.0
MD06G1020100 Malus domestica HOM05D004024 ORTHO05D004639 6.1e-11 71.2 60 60.0
Actinidia00101 Actinidia chinensis HOM05D004024 ORTHO05D004639 7.0e-07 57.8 43 67.4
EL10Ac7g15900 Beta vulgaris HOM05D004936 ORTHO05D005977 4.5e-06 55.1 67 43.3
Os03g0296300 Oryza sativa ssp. japonica HOM05D004936 ORTHO05D005977 4.5e-06 55.1 74 35.1
Ah.15g096180 Amaranthus hybridus HOM05D004936 ORTHO05D005977 7.7e-06 54.3 72 38.9


User provided reference genes

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