Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G085200 Glycine max HOM05D004336 ORTHO05D005367 2.2e-301 1038.1 504 100.0
Glyma.08G324800 Glycine max HOM05D004336 ORTHO05D005367 4.3e-281 970.7 505 93.3
Glyma.18G085100 Glycine max HOM05D004336 ORTHO05D005367 1.4e-250 869.4 508 84.3
Glyma.08G324900 Glycine max HOM05D004336 ORTHO05D005367 1.2e-246 856.3 507 82.4
Phvul.006G051000 Phaseolus vulgaris HOM05D004336 ORTHO05D005367 8.3e-232 807.0 511 76.7
VMungo0540G2288 Vigna mungo HOM05D004336 ORTHO05D005367 9.8e-225 783.5 539 72.5
arahy.Tifrunner.gnm1.ann1.KR0ZCF Arachis hypogaea HOM05D004336 ORTHO05D005367 2.8e-219 765.4 512 73.6
Lj6g0007567 Lotus japonicus HOM05D004336 ORTHO05D005367 3.6e-219 765.0 514 73.5
arahy.Tifrunner.gnm1.ann1.K6BPDT Arachis hypogaea HOM05D004336 ORTHO05D005367 6.4e-216 754.2 518 72.2
Psat5g171920 Pisum sativum HOM05D004336 ORTHO05D005367 4.0e-210 734.9 512 72.5
Medtr3g055690 Medicago truncatula HOM05D004336 ORTHO05D005367 4.1e-207 724.9 515 69.7
Lalb_Chr18g0050361 Lupinus albus HOM05D004336 ORTHO05D005367 1.2e-206 723.4 514 69.1
Ca_14783_v3 Cicer arietinum L. HOM05D004336 ORTHO05D005367 1.9e-204 716.1 518 69.5
Cfa020245 Carpinus fangiana HOM05D004336 ORTHO05D005367 7.6e-201 704.1 511 68.9
Prupe.4G229800 Prunus persica HOM05D004336 ORTHO05D005367 2.1e-198 696.0 516 67.2
PGR083G2301 Punica granatum HOM05D004336 ORTHO05D005367 3.5e-198 695.3 518 67.0
Haze_09771 Corylus avellana HOM05D004336 ORTHO05D005367 1.3e-197 693.3 511 68.5
Thecc.07G024300 Theobroma cacao HOM05D004336 ORTHO05D005367 8.1e-195 684.1 510 65.1
Duzib170G1061 Durio zibethinus HOM05D004336 ORTHO05D005367 2.4e-194 682.6 513 64.3
CSS0041250 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 9.0e-194 680.6 504 66.5
CSS0047700 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 9.0e-194 680.6 504 66.5
MD03G1190200 Malus domestica HOM05D004336 ORTHO05D005367 9.0e-194 680.6 517 66.5
COL.COLO4_09762 Corchorus olitorius HOM05D004336 ORTHO05D005367 1.1e-191 673.7 511 63.8
TWI38G0192 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 1.4e-191 673.3 510 65.9
Gohir.A01G085900 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.9e-191 672.9 514 64.8
RcHm_v2.0_Chr5g0041971 Rosa chinensis HOM05D004336 ORTHO05D005367 5.4e-191 671.4 513 66.3
FvH4_3g23790 Fragaria vesca HOM05D004336 ORTHO05D005367 9.3e-191 670.6 510 66.3
FAN11G0890 Fragaria x ananassa HOM05D004336 ORTHO05D005367 1.2e-190 670.2 510 66.3
TWI38G0059 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 1.6e-190 669.8 517 64.2
CSS0014417 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 2.1e-190 669.5 501 66.1
CSS0044060 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 2.1e-190 669.5 501 66.1
FAN25G1677 Fragaria x ananassa HOM05D004336 ORTHO05D005367 2.1e-190 669.5 510 65.9
ClCG09G020990 Citrullus lanatus HOM05D004336 ORTHO05D005367 3.5e-190 668.7 509 63.9
Actinidia05042 Actinidia chinensis HOM05D004336 ORTHO05D005367 2.3e-189 666.0 518 62.0
Gorai.002G095200 Gossypium raimondii HOM05D004336 ORTHO05D005367 2.3e-189 666.0 513 63.9
TAR627G0502 Trochodendron aralioides HOM05D004336 ORTHO05D005367 1.1e-188 663.7 526 63.1
Eucgr.F00628 Eucalyptus grandis HOM05D004336 ORTHO05D005367 1.5e-188 663.3 535 64.1
CiPaw.11G199400 Carya illinoinensis HOM05D004336 ORTHO05D005367 1.9e-188 662.9 507 65.1
Cpa.g.sc12.209 Carica papaya HOM05D004336 ORTHO05D005367 2.5e-188 662.5 517 63.1
CsaV3_7G018720 Cucumis sativus L. HOM05D004336 ORTHO05D005367 7.4e-188 661.0 509 63.5
Dinv40824 Davidia involucrata HOM05D004336 ORTHO05D005367 2.1e-187 659.4 527 62.4
HanXRQChr17g0546171 Helianthus annuus HOM05D004336 ORTHO05D005367 2.1e-187 659.4 513 62.4
FAN21G2219 Fragaria x ananassa HOM05D004336 ORTHO05D005367 6.2e-187 657.9 524 64.5
PGSC0003DMG400022194 Solanum tuberosum HOM05D004336 ORTHO05D005367 6.2e-187 657.9 530 60.9
Actinidia00105 Actinidia chinensis HOM05D004336 ORTHO05D005367 1.8e-186 656.4 516 62.0
Nn1g03279 Nelumbo nucifera HOM05D004336 ORTHO05D005367 2.4e-186 656.0 528 61.4
Nn1g03281 Nelumbo nucifera HOM05D004336 ORTHO05D005367 2.4e-186 656.0 528 61.4
Aqoxy1G04042 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 6.9e-186 654.4 521 61.6
Aqoxy4G01189 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 1.2e-185 653.7 516 63.8
Potri.001G360600 Populus trichocarpa HOM05D004336 ORTHO05D005367 2.0e-185 652.9 517 63.2
Sopen07g033360 Solanum pennellii HOM05D004336 ORTHO05D005367 4.5e-185 651.7 528 60.2
Peaxi162Scf00285g00932 Petunia axillaris HOM05D004336 ORTHO05D005367 7.6e-185 651.0 518 61.0
CAN.G337.39 Capsicum annuum HOM05D004336 ORTHO05D005367 1.3e-184 650.2 527 60.7
Lj1A883T40 Lonicera japonica HOM05D004336 ORTHO05D005367 2.9e-184 649.0 513 62.4
Solyc07g065140.4 Solanum lycopersicum HOM05D004336 ORTHO05D005367 6.4e-184 647.9 532 59.8
Migut.H01779 Erythranthe guttata HOM05D004336 ORTHO05D005367 9.3e-183 644.0 501 61.3
Nitab4.5_0010102g0040 Nicotiana tabacum HOM05D004336 ORTHO05D005367 1.2e-182 643.7 525 60.2
Sed0027079 Sechium edule HOM05D004336 ORTHO05D005367 1.6e-182 643.3 511 61.8
MSTRG.13007 Avicennia marina HOM05D004336 ORTHO05D005367 3.0e-181 639.0 516 60.5
TPR.G23588 Trifolium pratense HOM05D004336 ORTHO05D005367 6.7e-181 637.9 393 78.1
Sed0018719 Sechium edule HOM05D004336 ORTHO05D005367 1.1e-180 637.1 513 61.8
Atru.chr2.3600_Atru.chr2.3601 Acer truncatum HOM05D004336 ORTHO05D005367 1.9e-180 636.3 524 60.5
CSS0031037 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.9e-180 636.3 520 61.9
Eucgr.F03516 Eucalyptus grandis HOM05D004336 ORTHO05D005367 1.9e-180 636.3 516 61.2
Manes.15G064500 Manihot esculenta HOM05D004336 ORTHO05D005367 2.5e-180 636.0 530 60.6
vmacro11570 Vaccinium macrocarpon HOM05D004336 ORTHO05D005367 9.6e-180 634.0 495 62.6
Nitab4.5_0001160g0150 Nicotiana tabacum HOM05D004336 ORTHO05D005367 1.3e-179 633.6 527 59.2
SGA_v2.0_scaffold478G52227 Striga asiatica HOM05D004336 ORTHO05D005367 2.8e-179 632.5 509 60.5
CSS0013990 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 3.7e-179 632.1 520 61.5
Oeu057077.1 Olea europaea HOM05D004336 ORTHO05D005367 6.2e-179 631.3 535 59.1
Oeu057079.1 Olea europaea HOM05D004336 ORTHO05D005367 6.2e-179 631.3 535 59.1
Aa31LG3G11440 Aethionema arabicum HOM05D004336 ORTHO05D005367 1.1e-178 630.6 528 60.6
Gohir.D01G072200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.8e-178 629.8 513 62.0
CARHR268810 Cardamine hirsuta HOM05D004336 ORTHO05D005367 4.0e-178 628.6 548 58.9
Thhalv10013238m.g Eutrema salsugineum HOM05D004336 ORTHO05D005367 4.0e-178 628.6 532 59.8
Lsat_1_v5_gn_7_114040 Lactuca sativa HOM05D004336 ORTHO05D005367 6.9e-178 627.9 523 59.8
AT5G55500 Arabidopsis thaliana HOM05D004336 ORTHO05D005367 1.2e-177 627.1 541 59.7
MBI19_g06156_MAGBIO Magnolia biondii HOM05D004336 ORTHO05D005367 1.3e-176 623.6 507 60.6
PSO302G0308 Papaver somniferum HOM05D004336 ORTHO05D005367 1.7e-176 623.2 522 59.6
Sp6g17380 Schrenkiella parvula HOM05D004336 ORTHO05D005367 3.8e-176 622.1 537 60.0
HPP92_018937 Vanilla planifolia HOM05D004336 ORTHO05D005367 1.9e-175 619.8 511 60.7
Carub.0008s1585 Capsella rubella HOM05D004336 ORTHO05D005367 2.7e-174 615.9 541 58.8
AL8G31030 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 4.6e-174 615.1 539 58.1
Lj8A175T74 Lonicera japonica HOM05D004336 ORTHO05D005367 4.6e-174 615.1 495 63.0
Gohir.D05G377800 Gossypium hirsutum HOM05D004336 ORTHO05D005367 7.9e-174 614.4 523 58.9
EL10Ac4g07633 Beta vulgaris HOM05D004336 ORTHO05D005367 1.3e-173 613.6 517 60.5
BolC3t14066H Brassica oleracea HOM05D004336 ORTHO05D005367 3.9e-173 612.1 534 58.6
A03p14020 Brassica napus HOM05D004336 ORTHO05D005367 8.7e-173 610.9 530 58.5
HPP92_018936 Vanilla planifolia HOM05D004336 ORTHO05D005367 8.7e-173 610.9 492 60.8
Gorai.009G445600 Gossypium raimondii HOM05D004336 ORTHO05D005367 1.5e-172 610.1 523 58.9
PSO210G4424 Papaver somniferum HOM05D004336 ORTHO05D005367 1.5e-172 610.1 530 57.9
BraA03t10701Z Brassica rapa HOM05D004336 ORTHO05D005367 3.3e-172 609.0 529 58.4
MELO3C024890.2 Cucumis melo HOM05D004336 ORTHO05D005367 4.3e-172 608.6 509 60.1
DCAR_016633 Daucus carota HOM05D004336 ORTHO05D005367 9.6e-172 607.4 502 59.4
ATR0712G174 Amborella trichopoda HOM05D004336 ORTHO05D005367 3.7e-171 605.5 512 58.6
C03p16460 Brassica napus HOM05D004336 ORTHO05D005367 4.8e-171 605.1 529 58.4
Gohir.A04G010200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 4.8e-171 605.1 523 58.5
unitig_8.g4786 Utricularia gibba HOM05D004336 ORTHO05D005367 8.2e-171 604.4 515 58.8
Hund23166 Selenicereus undatus HOM05D004336 ORTHO05D005367 6.9e-170 601.3 519 58.6
Os08g0503800 Oryza sativa ssp. japonica HOM05D004336 ORTHO05D005367 3.4e-169 599.0 453 63.8
Ciclev10008121m.g Citrus clementina HOM05D004336 ORTHO05D005367 1.6e-166 590.1 516 58.7
Hund01925 Selenicereus undatus HOM05D004336 ORTHO05D005367 3.6e-166 589.0 519 56.5
THA.LOC104811644 Tarenaya hassleriana HOM05D004336 ORTHO05D005367 3.0e-165 585.9 524 55.5
Ah.04g166390 Amaranthus hybridus HOM05D004336 ORTHO05D005367 3.9e-165 585.5 477 58.9
Duzib213G0745 Durio zibethinus HOM05D004336 ORTHO05D005367 6.7e-165 584.7 516 58.1
BcaC01g06371 Brassica carinata HOM05D004336 ORTHO05D005367 4.1e-162 575.5 523 57.7
Sc03g0008140 Simmondsia chinensis HOM05D004336 ORTHO05D005367 2.0e-161 573.2 446 62.6
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 5.3e-154 548.5 455 59.8
SHI26554 Sapria himalayana HOM05D004336 ORTHO05D005367 1.0e-152 544.3 433 60.0
Rhsim06G0225600 Rhododendron simsii HOM05D004336 ORTHO05D005367 1.9e-151 540.0 449 60.1
AUR62040678 Chenopodium quinoa HOM05D004336 ORTHO05D005367 8.8e-149 531.2 382 65.4
EL10Ac4g07632 Beta vulgaris HOM05D004336 ORTHO05D005367 1.6e-145 520.4 507 54.2
GSVIVG01037759001 Vitis vinifera HOM05D004336 ORTHO05D005367 2.1e-142 510.0 311 76.2
A10p12600 Brassica napus HOM05D004336 ORTHO05D005367 8.8e-141 504.6 424 59.9
QL08p008529 Quercus lobata HOM05D004336 ORTHO05D005367 3.3e-140 502.7 291 80.1
Cc05_g14530 Coffea canephora HOM05D004336 ORTHO05D005367 1.6e-134 483.8 311 70.1
CDE07G1634 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 1.5e-132 477.2 312 71.5
RcHm_v2.0_Chr5g0041921 Rosa chinensis HOM05D004336 ORTHO05D005367 8.3e-131 471.5 303 72.9
AUR62015931 Chenopodium quinoa HOM05D004336 ORTHO05D005367 2.0e-121 440.3 382 57.1
SMO347G0076 Selaginella moellendorffii HOM05D004336 ORTHO05D005367 1.1e-119 434.5 502 45.6
Mapoly0007s0065 Marchantia polymorpha HOM05D004336 ORTHO05D005367 6.8e-117 425.2 525 43.8
Ah.06g181060 Amaranthus hybridus HOM05D004336 ORTHO05D005367 2.6e-116 423.3 288 68.4
Pp3c14_26580 Physcomitrium patens HOM05D004336 ORTHO05D005367 1.7e-112 410.6 571 39.8
QL04p097747 Quercus lobata HOM05D004336 ORTHO05D005367 1.4e-106 391.0 238 77.3
Sabra16G0237900 Salix brachista HOM05D004336 ORTHO05D005367 5.6e-103 379.0 254 71.3
Oeu019622.1 Olea europaea HOM05D004336 ORTHO05D005367 8.3e-99 365.2 239 71.1
BcaB08g35906 Brassica carinata HOM05D004336 ORTHO05D005367 2.9e-91 340.1 521 42.4
Zm00001eb034690 Zea mays HOM05D004336 ORTHO05D005367 1.1e-82 311.6 316 50.9
RcHm_v2.0_Chr5g0080011 Rosa chinensis HOM05D004336 ORTHO05D005367 4.2e-82 309.7 196 76.0
BraA10t43362Z Brassica rapa HOM05D004336 ORTHO05D005367 3.6e-78 296.6 336 49.4
FvH4_3g12320 Fragaria vesca HOM05D004336 ORTHO05D005367 1.3e-75 288.1 200 67.5
MD11G1206800 Malus domestica HOM05D004336 ORTHO05D005367 3.5e-73 280.0 217 63.6
BcaB01g04318 Brassica carinata HOM05D004336 ORTHO05D005367 2.4e-66 257.3 271 53.5
MD11G1206700 Malus domestica HOM05D004336 ORTHO05D005367 4.6e-65 253.1 166 73.5
CBR_g22021 Chara braunii HOM05D000019 ORTHO05D000048 3.7e-54 216.9 463 29.8
BolC9t57481H Brassica oleracea HOM05D004336 ORTHO05D005367 2.4e-53 214.2 250 50.8
C09p46150 Brassica napus HOM05D004336 ORTHO05D005367 1.2e-52 211.8 250 49.6
QL08p008521 Quercus lobata HOM05D004336 ORTHO05D005367 2.7e-49 200.7 220 50.9
C09p46160 Brassica napus HOM05D004336 ORTHO05D005367 2.5e-47 194.1 158 63.9
AagrBONN_evm.TU.Sc2ySwM_228.1049 Anthoceros agrestis HOM05D004336 ORTHO05D005367 9.7e-47 192.2 184 52.7
A04p06990 Brassica napus HOM05D004336 ORTHO05D005367 9.7e-47 192.2 155 58.7
BraA04t16398Z Brassica rapa HOM05D004336 ORTHO05D005367 9.7e-47 192.2 155 58.7
A03p66870 Brassica napus HOM05D004336 ORTHO05D005367 6.9e-45 186.0 124 67.7
Eucgr.I00174 Eucalyptus grandis HOM05D004336 ORTHO05D005367 4.2e-42 176.8 109 76.1
SHI26544 Sapria himalayana HOM05D004336 ORTHO05D005367 2.4e-37 161.0 165 49.1
SHI22211 Sapria himalayana HOM05D004336 ORTHO05D005367 2.5e-34 151.0 258 37.6
Ah.06g181050 Amaranthus hybridus HOM05D004336 ORTHO05D005367 1.2e-33 148.7 170 45.9
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 4.7e-33 146.7 106 61.3
SEGI_14116 Sequoiadendron giganteum HOM05D004336 ORTHO05D005367 6.1e-33 146.4 286 32.9
SHI40288 Sapria himalayana HOM05D004336 ORTHO05D005367 8.0e-33 146.0 161 49.1
MSTRG.14468 Avicennia marina HOM05D004336 ORTHO05D005367 3.3e-31 140.6 143 46.9
SHI48138 Sapria himalayana HOM05D004336 ORTHO05D005367 2.2e-30 137.9 261 37.2
TAR627G0477 Trochodendron aralioides HOM05D000054 ORTHO05D000171 3.1e-29 134.0 98 67.3
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 5.5e-26 123.2 76 69.7
BolC9t57326H Brassica oleracea HOM05D004336 ORTHO05D005367 5.5e-26 123.2 76 69.7
CDE07G0680 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 3.0e-24 117.5 171 42.1
AL8G29720 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 1.5e-23 115.2 95 58.9
BcaB05g23098 Brassica carinata HOM05D004336 ORTHO05D005367 5.3e-21 106.7 85 55.3
RcHm_v2.0_Chr5g0079391 Rosa chinensis HOM05D004336 ORTHO05D005367 1.0e-19 102.4 96 55.2
BcaB01g04317 Brassica carinata HOM05D004336 ORTHO05D005367 4.7e-17 93.6 72 65.3
HanXRQChr04g0109771 Helianthus annuus HOM05D004336 ORTHO05D005367 3.7e-14 84.0 88 44.3
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 1.3e-11 75.5 59 57.6
TAR612G0001 Trochodendron aralioides HOM05D000054 ORTHO05D000171 2.6e-07 61.2 35 85.7
C09p46170 Brassica napus HOM05D004336 ORTHO05D040132 1.3e-06 58.9 37 70.3
BolC9t57482H Brassica oleracea HOM05D004336 ORTHO05D040132 1.3e-06 58.9 37 70.3


User provided reference genes

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