Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G074300 Glycine max HOM05D005351 ORTHO05D006542 0.0e+00 1564.7 837 100.0
Glyma.08G332700 Glycine max HOM05D005351 ORTHO05D006542 0.0e+00 1389.0 839 90.6
VMungo0540G1402 Vigna mungo HOM05D005351 ORTHO05D006542 0.0e+00 1209.1 839 79.4
Phvul.006G059260 Phaseolus vulgaris HOM05D005351 ORTHO05D006542 0.0e+00 1187.2 849 78.2
Lj6g0009098 Lotus japonicus HOM05D005351 ORTHO05D006542 5.7e-286 987.6 839 69.1
Ca_12455_v3 Cicer arietinum L. HOM05D005351 ORTHO05D006542 2.4e-276 955.7 840 67.0
Medtr3g461030 Medicago truncatula HOM05D005351 ORTHO05D006542 6.5e-274 947.6 845 65.4
TPR.G17956 Trifolium pratense HOM05D005351 ORTHO05D006542 1.3e-266 923.3 840 65.1
Psat5g166400 Pisum sativum HOM05D005351 ORTHO05D006542 2.3e-263 912.5 872 63.3
Lalb_Chr15g0082311 Lupinus albus HOM05D005351 ORTHO05D006542 4.4e-262 908.3 845 65.9
arahy.Tifrunner.gnm1.ann1.1R5J8M Arachis hypogaea HOM05D005351 ORTHO05D006542 5.4e-212 741.9 816 58.6
arahy.Tifrunner.gnm1.ann1.LDHF9L Arachis hypogaea HOM05D005351 ORTHO05D006542 1.9e-201 706.8 816 56.7
Cfa021891 Carpinus fangiana HOM05D005351 ORTHO05D006542 3.5e-158 563.1 892 42.9
Haze_09867 Corylus avellana HOM05D005351 ORTHO05D006542 7.7e-158 562.0 894 44.2
QL08p002685 Quercus lobata HOM05D005351 ORTHO05D006542 4.4e-153 546.2 894 45.0
RcHm_v2.0_Chr5g0075571 Rosa chinensis HOM05D005351 ORTHO05D006542 1.1e-140 505.0 879 41.2
CiPaw.12G140700 Carya illinoinensis HOM05D005351 ORTHO05D006542 1.5e-140 504.6 811 44.5
Prupe.6G028400 Prunus persica HOM05D005351 ORTHO05D006542 2.3e-138 497.3 899 41.7
MD03G1035400 Malus domestica HOM05D005351 ORTHO05D006542 3.9e-133 479.9 896 39.8
FAN11G1247 Fragaria x ananassa HOM05D005351 ORTHO05D006542 1.4e-130 471.5 878 41.6
FAN16G2746 Fragaria x ananassa HOM05D005351 ORTHO05D006542 2.6e-129 467.2 878 41.6
Potri.001G371600 Populus trichocarpa HOM05D005351 ORTHO05D006542 3.4e-129 466.8 865 42.8
FAN21G2745 Fragaria x ananassa HOM05D005351 ORTHO05D006542 1.7e-128 464.5 875 41.1
FAN25G1298 Fragaria x ananassa HOM05D005351 ORTHO05D006542 3.2e-127 460.3 878 40.5
TAR626G0279 Trochodendron aralioides HOM05D005351 ORTHO05D006542 7.0e-127 459.1 938 40.1
Duzib213G0009 Durio zibethinus HOM05D005351 ORTHO05D006542 6.0e-126 456.1 904 39.7
Sabra16G0244200 Salix brachista HOM05D005351 ORTHO05D006542 1.7e-125 454.5 890 41.0
MD11G1037100 Malus domestica HOM05D005351 ORTHO05D006542 6.6e-125 452.6 895 39.9
TWI38G2212 Tripterygium wilfordii HOM05D005351 ORTHO05D006542 6.4e-120 436.0 913 40.1
Gohir.D05G384000 Gossypium hirsutum HOM05D005351 ORTHO05D006542 1.8e-114 417.9 899 40.4
Gorai.009G450800 Gossypium raimondii HOM05D005351 ORTHO05D006542 4.0e-114 416.8 896 40.5
Thecc.07G007900 Theobroma cacao HOM05D005351 ORTHO05D006542 2.6e-113 414.1 903 39.3
Manes.01G003500 Manihot esculenta HOM05D005351 ORTHO05D006542 1.3e-112 411.8 880 39.1
CSS0045517 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 6.4e-112 409.5 917 36.0
Gohir.A04G005700 Gossypium hirsutum HOM05D005351 ORTHO05D006542 6.4e-112 409.5 899 40.5
Ciclev10007493m.g Citrus clementina HOM05D005351 ORTHO05D006542 1.9e-111 407.9 826 40.2
TWI38G1324 Tripterygium wilfordii HOM05D005351 ORTHO05D006542 1.9e-111 407.9 900 39.8
CSS0029070 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 2.1e-110 404.4 917 35.8
COL.COLO4_07741 Corchorus olitorius HOM05D005351 ORTHO05D006542 5.1e-109 399.8 888 38.4
Actinidia03651 Actinidia chinensis HOM05D005351 ORTHO05D006542 6.6e-109 399.4 896 38.3
Cc05_g15290 Coffea canephora HOM05D005351 ORTHO05D006542 9.6e-108 395.6 819 39.6
Nitab4.5_0003328g0090 Nicotiana tabacum HOM05D005351 ORTHO05D006542 9.0e-106 389.0 875 38.6
Nitab4.5_0005478g0030 Nicotiana tabacum HOM05D005351 ORTHO05D006542 2.0e-105 387.9 875 38.3
CANSAT11G0508 Cannabis sativa HOM05D005351 ORTHO05D006542 2.2e-104 384.4 892 36.9
Dinv40885 Davidia involucrata HOM05D005351 ORTHO05D006542 2.2e-104 384.4 876 38.0
GSVIVG01014743001 Vitis vinifera HOM05D005351 ORTHO05D006542 6.4e-104 382.9 863 36.3
Atru.chr2.3836 Acer truncatum HOM05D005351 ORTHO05D006542 4.2e-103 380.2 758 41.6
FvH4_3g42241 Fragaria vesca HOM05D005351 ORTHO05D006542 9.3e-103 379.0 810 38.6
Nn1g02046 Nelumbo nucifera HOM05D005351 ORTHO05D006542 8.1e-99 365.9 955 36.1
Rhsim04G0010500 Rhododendron simsii HOM05D005351 ORTHO05D006542 9.9e-97 359.0 884 37.2
CAN.G492.50 Capsicum annuum HOM05D005351 ORTHO05D006542 1.3e-96 358.6 887 37.8
Eucgr.F02026 Eucalyptus grandis HOM05D005351 ORTHO05D006542 1.3e-96 358.6 843 38.2
PGR083G0334 Punica granatum HOM05D005351 ORTHO05D006542 1.1e-95 355.5 881 37.2
PGSC0003DMG400014404 Solanum tuberosum HOM05D005351 ORTHO05D006542 1.1e-95 355.5 911 37.7
SalBow8G3039 Salvia bowleyana HOM05D005351 ORTHO05D006542 2.4e-95 354.4 826 36.3
Nn3g19476 Nelumbo nucifera HOM05D005351 ORTHO05D006542 2.1e-94 351.3 859 36.0
Migut.M01635 Erythranthe guttata HOM05D005351 ORTHO05D006542 3.5e-94 350.5 883 37.6
Sed0019267 Sechium edule HOM05D005351 ORTHO05D006542 6.7e-93 346.3 894 36.1
Sopen10g001810 Solanum pennellii HOM05D005351 ORTHO05D006542 6.7e-93 346.3 909 35.8
SGA_v2.0_scaffold168G38576 Striga asiatica HOM05D005351 ORTHO05D006542 6.7e-93 346.3 842 36.9
Solyc10g005850.4 Solanum lycopersicum HOM05D005351 ORTHO05D006542 2.1e-91 341.3 909 35.3
CsaV3_7G023840 Cucumis sativus L. HOM05D005351 ORTHO05D006542 2.8e-91 340.9 887 35.2
Peaxi162Scf00018g00155 Petunia axillaris HOM05D005351 ORTHO05D006542 4.0e-90 337.0 855 36.5
MSTRG.15808 Avicennia marina HOM05D005351 ORTHO05D006542 4.9e-88 330.1 824 36.5
AT3G13225 Arabidopsis thaliana HOM05D005351 ORTHO05D006542 6.4e-88 329.7 868 36.5
Cpa.g.sc12.108 Carica papaya HOM05D005351 ORTHO05D006542 1.4e-87 328.6 881 36.2
PSO210G4843 Papaver somniferum HOM05D005351 ORTHO05D006542 2.1e-86 324.7 863 36.5
ClCG09G021540 Citrullus lanatus HOM05D005351 ORTHO05D006542 6.0e-86 323.2 991 32.5
Carub.0003s1261 Capsella rubella HOM05D005351 ORTHO05D006542 7.9e-86 322.8 881 36.7
PSO210G4950 Papaver somniferum HOM05D005351 ORTHO05D006542 7.9e-86 322.8 876 36.2
Lj8A180G96 Lonicera japonica HOM05D005351 ORTHO05D006542 6.7e-85 319.7 915 35.2
DCAR_013254 Daucus carota HOM05D005351 ORTHO05D006542 1.1e-84 318.9 878 35.3
THA.LOC104815687 Tarenaya hassleriana HOM05D005351 ORTHO05D006542 1.1e-84 318.9 860 34.2
Aqoxy1G04296 Aquilegia oxysepala HOM05D005351 ORTHO05D006542 3.3e-84 317.4 906 34.4
vmacro09623 Vaccinium macrocarpon HOM05D005351 ORTHO05D006542 3.1e-82 310.8 875 36.0
BcaC09g48295 Brassica carinata HOM05D005351 ORTHO05D006542 9.0e-82 309.3 879 34.6
BolC1t05130H Brassica oleracea HOM05D005351 ORTHO05D006542 9.0e-82 309.3 879 34.6
HanXRQChr11g0334131 Helianthus annuus HOM05D005351 ORTHO05D006542 9.0e-82 309.3 853 35.6
Hund23091 Selenicereus undatus HOM05D005351 ORTHO05D006542 1.2e-81 308.9 863 35.2
Oeu049420.1 Olea europaea HOM05D005351 ORTHO05D006542 2.0e-81 308.1 881 33.6
AUR62017130 Chenopodium quinoa HOM05D005351 ORTHO05D006542 1.0e-80 305.8 916 34.7
C01p51820 Brassica napus HOM05D005351 ORTHO05D006542 2.9e-80 304.3 816 35.3
BraA01t04066Z Brassica rapa HOM05D005351 ORTHO05D006542 3.8e-80 303.9 864 34.4
ECA236G3149 Erigeron canadensis HOM05D005351 ORTHO05D006542 6.5e-80 303.1 829 35.7
CARHR087840 Cardamine hirsuta HOM05D005351 ORTHO05D006542 8.4e-80 302.8 838 35.0
A01p40300 Brassica napus HOM05D005351 ORTHO05D006542 1.4e-79 302.0 864 34.3
AUR62035679 Chenopodium quinoa HOM05D005351 ORTHO05D006542 3.2e-79 300.8 912 34.6
Hma1.2p1_0193F.1_g083920 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 9.3e-79 299.3 905 33.6
Thhalv10020110m.g Eutrema salsugineum HOM05D005351 ORTHO05D006542 1.6e-78 298.5 815 34.1
BcaB04g21006 Brassica carinata HOM05D005351 ORTHO05D006542 2.7e-78 297.7 808 34.8
AL3G25030 Arabidopsis lyrata HOM05D005351 ORTHO05D006542 6.0e-78 296.6 830 34.1
Sp3g11430 Schrenkiella parvula HOM05D005351 ORTHO05D006542 2.3e-77 294.7 872 34.2
Dinv10362 Davidia involucrata HOM05D005351 ORTHO05D006542 1.5e-76 292.0 776 35.6
Os06g0298400 Oryza sativa ssp. japonica HOM05D005351 ORTHO05D006542 4.1e-74 283.9 791 33.9
unitig_0.g707 Utricularia gibba HOM05D005351 ORTHO05D006542 5.3e-74 283.5 791 33.5
Ah.06g181500 Amaranthus hybridus HOM05D005351 ORTHO05D006542 1.2e-73 282.3 834 35.6
Aa31LG8G460 Aethionema arabicum HOM05D005351 ORTHO05D006542 6.5e-72 276.6 774 36.0
EL10Ac4g07541 Beta vulgaris HOM05D005351 ORTHO05D006542 3.9e-69 267.3 832 34.1
Sc03g0011530 Simmondsia chinensis HOM05D005351 ORTHO05D006542 3.2e-63 247.7 642 37.1
Zm00001eb381020 Zea mays HOM05D005351 ORTHO05D006542 4.7e-62 243.8 814 32.8
HPP92_017874 Vanilla planifolia HOM05D005351 ORTHO05D006542 3.9e-61 240.7 754 31.4
ATR0751G017 Amborella trichopoda HOM05D005351 ORTHO05D006542 5.1e-61 240.4 950 29.9
MELO3C024969.2 Cucumis melo HOM05D005351 ORTHO05D006542 2.0e-60 238.4 799 32.8
CDE05G2589 Ceratophyllum demersum HOM05D005351 ORTHO05D006542 9.7e-60 236.1 808 31.7
Lsat_1_v5_gn_7_114900 Lactuca sativa HOM05D005351 ORTHO05D006542 5.5e-55 220.3 823 31.0
MBI14_g37362_MAGBIO Magnolia biondii HOM05D005351 ORTHO05D006542 2.3e-53 214.9 854 30.6
SEGI_31992 Sequoiadendron giganteum HOM05D005351 ORTHO05D006542 2.6e-52 211.5 978 28.8
PSO782G2183 Papaver somniferum HOM05D005351 ORTHO05D006542 3.6e-46 191.0 155 65.8
Zm00001eb281160 Zea mays HOM05D005351 ORTHO05D006542 1.5e-44 185.7 779 30.9
Oeu017994.1 Olea europaea HOM05D005351 ORTHO05D006542 3.7e-43 181.0 223 51.1
CDE05G0998 Ceratophyllum demersum HOM05D005351 ORTHO05D006542 1.2e-41 176.0 814 27.1
MBI14_g27041_MAGBIO Magnolia biondii HOM05D005351 ORTHO05D006542 1.8e-37 162.2 158 56.3
AagrBONN_evm.TU.Sc2ySwM_368.1722__1723 Anthoceros agrestis HOM05D005351 ORTHO05D006542 1.8e-34 152.1 197 48.2
CBR_g12012 Chara braunii HOM05D005351 ORTHO05D006542 1.1e-31 142.9 226 44.2
Psat2g169600 Pisum sativum HOM05D005351 ORTHO05D006542 1.0e-29 136.3 131 58.8
CSS0028997 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 9.8e-28 129.8 389 29.6
CSS0030315 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 1.7e-27 129.0 389 29.6
Actinidia00844 Actinidia chinensis HOM05D005351 ORTHO05D006542 3.7e-27 127.9 482 31.1
Pp3c7_8580 Physcomitrium patens HOM05D005351 ORTHO05D006542 3.2e-26 124.8 223 40.8
Hma1.2p1_3473F.1_g336240 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 2.9e-24 118.2 318 39.0
HPP92_028497 Vanilla planifolia HOM05D005351 ORTHO05D006542 1.9e-23 115.5 162 46.9
SMO164G0196 Selaginella moellendorffii HOM05D005351 ORTHO05D006542 7.3e-23 113.6 143 46.9
AagrBONN_evm.TU.Sc2ySwM_368.1723 Anthoceros agrestis HOM05D005351 ORTHO05D006542 7.8e-17 93.6 128 49.2
Dinv10361 Davidia involucrata HOM05D005351 ORTHO05D006542 2.3e-16 92.0 73 54.8
vmacro11082 Vaccinium macrocarpon HOM05D000009 ORTHO05D006542 6.6e-16 90.5 97 54.6
Cre09.g388430 Chlamydomonas reinhardtii HOM05D005351 ORTHO05D006542 1.2e-09 69.7 187 30.5
PSO782G1978 Papaver somniferum HOM05D005351 ORTHO05D006542 2.1e-09 68.9 476 29.4
Cc00_g23250 Coffea canephora HOM05D000874 ORTHO05D001049 5.6e-07 60.8 42 61.9


User provided reference genes

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