Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G070400 Glycine max HOM05D004114 ORTHO05D004667 0.0e+00 1250.3 650 100.0
Glyma.08G335400 Glycine max HOM05D004114 ORTHO05D004667 0.0e+00 1200.7 646 96.3
Phvul.006G062700 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 0.0e+00 1160.2 653 92.3
Ca_06427_v3 Cicer arietinum L. HOM05D004114 ORTHO05D004667 1.0e-290 1003.0 652 80.8
Lalb_Chr15g0082581 Lupinus albus HOM05D004114 ORTHO05D004667 2.8e-288 995.0 650 80.2
arahy.Tifrunner.gnm1.ann1.Q5U408 Arachis hypogaea HOM05D004114 ORTHO05D004667 1.8e-287 992.3 648 80.2
arahy.Tifrunner.gnm1.ann1.49TU8N Arachis hypogaea HOM05D004114 ORTHO05D004667 2.3e-287 991.9 648 80.2
TPR.G1262 Trifolium pratense HOM05D004114 ORTHO05D004667 8.9e-287 989.9 652 79.8
Glyma.02G304000 Glycine max HOM05D004114 ORTHO05D004667 1.2e-286 989.6 651 79.7
Medtr5g096860 Medicago truncatula HOM05D004114 ORTHO05D004667 7.1e-284 980.3 652 78.8
LjContig00081g0000990 Lotus japonicus HOM05D004114 ORTHO05D004667 6.0e-283 977.2 655 77.9
VMungo0647G1293 Vigna mungo HOM05D004114 ORTHO05D004667 7.8e-283 976.9 652 79.0
arahy.Tifrunner.gnm1.ann1.V027MD Arachis hypogaea HOM05D004114 ORTHO05D004667 9.5e-281 969.9 649 79.4
Lalb_Chr18g0050571 Lupinus albus HOM05D004114 ORTHO05D004667 9.5e-281 969.9 650 79.5
arahy.Tifrunner.gnm1.ann1.JLH2AW Arachis hypogaea HOM05D004114 ORTHO05D004667 4.7e-280 967.6 649 79.4
Phvul.008G283500 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 1.9e-276 955.7 652 77.5
Psat2g005360 Pisum sativum HOM05D004114 ORTHO05D004667 5.2e-271 937.6 682 72.6
arahy.Tifrunner.gnm1.ann1.4V7EDQ Arachis hypogaea HOM05D004114 ORTHO05D004667 7.3e-265 917.1 587 80.7
QL01p004694 Quercus lobata HOM05D004114 ORTHO05D004667 4.3e-249 864.8 679 67.6
Prupe.4G249300 Prunus persica HOM05D004114 ORTHO05D004667 1.4e-247 859.8 658 68.5
TWI34G1345 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 4.0e-247 858.2 658 67.0
GSVIVG01025259001 Vitis vinifera HOM05D004114 ORTHO05D004667 1.2e-246 856.7 652 69.6
Manes.06G164400 Manihot esculenta HOM05D004114 ORTHO05D004667 4.5e-246 854.7 668 66.9
Cfa009771 Carpinus fangiana HOM05D004114 ORTHO05D004667 4.9e-245 851.3 647 68.5
Dinv22178 Davidia involucrata HOM05D004114 ORTHO05D004667 8.4e-245 850.5 657 68.5
RcHm_v2.0_Chr5g0052041 Rosa chinensis HOM05D004114 ORTHO05D004667 3.2e-244 848.6 644 69.4
MD11G1193200 Malus domestica HOM05D004114 ORTHO05D004667 7.9e-243 844.0 658 68.2
MD03G1175100 Malus domestica HOM05D004114 ORTHO05D004667 3.9e-242 841.6 650 68.3
FvH4_3g28860 Fragaria vesca HOM05D004114 ORTHO05D004667 1.1e-241 840.1 650 68.3
Dinv36259 Davidia involucrata HOM05D004114 ORTHO05D004667 1.3e-240 836.6 631 69.4
Potri.009G053400 Populus trichocarpa HOM05D004114 ORTHO05D004667 3.7e-240 835.1 686 65.3
FAN16G1351 Fragaria x ananassa HOM05D004114 ORTHO05D004667 4.5e-238 828.2 650 67.4
Sabra09G0038900 Salix brachista HOM05D004114 ORTHO05D004667 4.5e-238 828.2 686 64.4
TAR633G1524 Trochodendron aralioides HOM05D004114 ORTHO05D004667 1.7e-237 826.2 622 68.5
Atru.chr3.2717 Acer truncatum HOM05D004114 ORTHO05D004667 6.5e-237 824.3 644 67.2
COL.COLO4_07585 Corchorus olitorius HOM05D004114 ORTHO05D004667 1.1e-236 823.5 648 67.1
Thecc.09G233600 Theobroma cacao HOM05D004114 ORTHO05D004667 2.5e-236 822.4 654 67.0
FAN11G0384 Fragaria x ananassa HOM05D004114 ORTHO05D004667 4.2e-236 821.6 637 68.0
Duzib150G0789 Durio zibethinus HOM05D004114 ORTHO05D004667 1.0e-234 817.0 650 66.0
Actinidia23972 Actinidia chinensis HOM05D004114 ORTHO05D004667 2.3e-234 815.8 661 65.2
vmacro12717 Vaccinium macrocarpon HOM05D004114 ORTHO05D004667 6.7e-234 814.3 662 65.0
Gohir.D09G111100 Gossypium hirsutum HOM05D004114 ORTHO05D004667 1.1e-233 813.5 658 66.4
Gorai.006G128700 Gossypium raimondii HOM05D004114 ORTHO05D004667 1.5e-233 813.1 658 66.3
CSS0048735 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 4.3e-233 811.6 650 65.7
Gohir.A09G114400 Gossypium hirsutum HOM05D004114 ORTHO05D004667 7.4e-233 810.8 662 66.2
Oeu015664.1 Olea europaea HOM05D004114 ORTHO05D004667 1.3e-232 810.1 662 63.3
MELO3C015192.2 Cucumis melo HOM05D004114 ORTHO05D004667 4.8e-232 808.1 651 63.6
FAN21G1677 Fragaria x ananassa HOM05D004114 ORTHO05D004667 4.8e-232 808.1 636 67.6
CANSAT54G0770 Cannabis sativa HOM05D004114 ORTHO05D004667 6.3e-232 807.7 643 66.3
CsaV3_1G042830 Cucumis sativus L. HOM05D004114 ORTHO05D004667 2.9e-229 798.9 651 63.0
Nn7g36204 Nelumbo nucifera HOM05D004114 ORTHO05D004667 2.5e-228 795.8 648 64.2
BraA06t23464Z Brassica rapa HOM05D004114 ORTHO05D004667 4.1e-223 778.5 638 63.3
PSO339G0497 Papaver somniferum HOM05D004114 ORTHO05D004667 1.2e-222 776.9 653 63.4
Sp1g38010 Schrenkiella parvula HOM05D004114 ORTHO05D004667 1.0e-221 773.9 642 63.1
Sed0020827 Sechium edule HOM05D004114 ORTHO05D004667 3.8e-221 771.9 617 65.3
BcaC08g43302 Brassica carinata HOM05D004114 ORTHO05D004667 5.0e-221 771.5 638 62.7
BolC6t35762H Brassica oleracea HOM05D004114 ORTHO05D004667 5.0e-221 771.5 638 62.7
ClCG03G013250 Citrullus lanatus HOM05D004114 ORTHO05D004667 3.2e-220 768.8 651 61.8
BcaB07g33582 Brassica carinata HOM05D004114 ORTHO05D004667 4.2e-220 768.5 641 62.2
Duzib168G0105 Durio zibethinus HOM05D004114 ORTHO05D004667 7.2e-220 767.7 663 63.0
TWI60G1569 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 9.4e-220 767.3 656 62.7
CSS0035176 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 1.6e-219 766.5 650 63.1
Thhalv10011291m.g Eutrema salsugineum HOM05D004114 ORTHO05D004667 1.6e-219 766.5 642 62.6
PGR119G0430 Punica granatum HOM05D004114 ORTHO05D004667 6.1e-219 764.6 656 61.6
A06p02560 Brassica napus HOM05D004114 ORTHO05D004667 1.8e-218 763.1 626 63.4
Sc16g0011490 Simmondsia chinensis HOM05D004114 ORTHO05D004667 5.2e-218 761.5 639 62.1
THA.LOC104817907 Tarenaya hassleriana HOM05D004114 ORTHO05D004667 6.7e-218 761.1 648 60.6
AT1G51350 Arabidopsis thaliana HOM05D004114 ORTHO05D004667 5.7e-217 758.1 642 61.4
C06p06490 Brassica napus HOM05D004114 ORTHO05D004667 9.7e-217 757.3 626 62.9
CiPaw.13G160800 Carya illinoinensis HOM05D004114 ORTHO05D004667 2.2e-216 756.1 553 71.8
Hund07507 Selenicereus undatus HOM05D004114 ORTHO05D004667 2.8e-216 755.7 640 61.9
Aa31LG10G3520 Aethionema arabicum HOM05D004114 ORTHO05D004667 1.1e-215 753.8 645 60.9
AUR62000120 Chenopodium quinoa HOM05D004114 ORTHO05D004667 1.4e-215 753.4 649 60.2
DCAR_029951 Daucus carota HOM05D004114 ORTHO05D004667 3.1e-215 752.3 636 62.1
Cc00_g05950 Coffea canephora HOM05D004114 ORTHO05D004667 4.1e-215 751.9 671 59.2
AL1G59170 Arabidopsis lyrata HOM05D004114 ORTHO05D004667 5.3e-215 751.5 642 60.6
Carub.0001s4022 Capsella rubella HOM05D004114 ORTHO05D004667 7.0e-215 751.1 639 61.2
Ah.06g194200 Amaranthus hybridus HOM05D004114 ORTHO05D004667 1.2e-214 750.4 648 59.1
FAN25G0168 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.6e-214 750.0 690 60.3
CARHR041420 Cardamine hirsuta HOM05D004114 ORTHO05D004667 8.5e-213 744.2 642 60.1
Solyc11g065750.2 Solanum lycopersicum HOM05D004114 ORTHO05D004667 8.5e-213 744.2 662 60.4
Peaxi162Scf00004g00237 Petunia axillaris HOM05D004114 ORTHO05D004667 9.4e-212 740.7 670 58.2
Aqoxy2G00130 Aquilegia oxysepala HOM05D004114 ORTHO05D004667 1.4e-210 736.9 647 59.7
Sopen11g025510 Solanum pennellii HOM05D004114 ORTHO05D004667 5.2e-210 734.9 662 59.5
MSTRG.12468 Avicennia marina HOM05D004114 ORTHO05D004667 2.6e-209 732.6 661 59.2
HanXRQChr07g0197461 Helianthus annuus HOM05D004114 ORTHO05D004667 2.2e-208 729.6 630 60.2
Nitab4.5_0001587g0080 Nicotiana tabacum HOM05D004114 ORTHO05D004667 1.5e-204 716.8 647 59.5
Migut.D00601 Erythranthe guttata HOM05D004114 ORTHO05D004667 1.2e-203 713.8 666 56.6
Ciclev10014795m.g Citrus clementina HOM05D004114 ORTHO05D004667 2.1e-203 713.0 542 68.6
SGA_v2.0_scaffold42G16101 Striga asiatica HOM05D004114 ORTHO05D004667 4.0e-202 708.8 665 57.0
SalBow6G3263 Salvia bowleyana HOM05D004114 ORTHO05D004667 4.8e-200 701.8 710 54.1
EL10Ac4g10252 Beta vulgaris HOM05D004114 ORTHO05D004667 3.1e-199 699.1 649 57.6
Lsat_1_v5_gn_2_97760 Lactuca sativa HOM05D004114 ORTHO05D004667 3.5e-198 695.7 646 57.6
EL10Ac4g10249 Beta vulgaris HOM05D004114 ORTHO05D004667 1.7e-197 693.3 649 57.8
Haze_23137 Corylus avellana HOM05D004114 ORTHO05D004667 1.1e-196 690.6 603 62.5
Nn2g15370 Nelumbo nucifera HOM05D004114 ORTHO05D004667 1.9e-196 689.9 540 65.0
unitig_699.g19135 Utricularia gibba HOM05D004114 ORTHO05D004667 5.5e-196 688.3 668 54.5
CDE05G0618 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 1.4e-194 683.7 642 56.7
Oeu063322.2 Olea europaea HOM05D004114 ORTHO05D004667 8.0e-187 657.9 652 55.1
Oeu043295.1 Olea europaea HOM05D004114 ORTHO05D004667 2.1e-179 633.3 576 59.2
AUR62019301 Chenopodium quinoa HOM05D004114 ORTHO05D004667 2.6e-177 626.3 537 60.1
Eucgr.J00767 Eucalyptus grandis HOM05D004114 ORTHO05D004667 3.5e-174 615.9 533 59.5
ATR0332G053 Amborella trichopoda HOM05D004114 ORTHO05D004667 7.8e-174 614.8 636 53.0
CDE05G0406 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 7.3e-172 608.2 648 52.8
Nitab4.5_0002741g0170 Nicotiana tabacum HOM05D004114 ORTHO05D004667 5.2e-170 602.1 554 58.5
ECA238G2774 Erigeron canadensis HOM05D004114 ORTHO05D004667 4.4e-169 599.0 655 52.8
CAN.G599.3 Capsicum annuum HOM05D004114 ORTHO05D004667 4.9e-168 595.5 512 60.7
HPP92_020382 Vanilla planifolia HOM05D004114 ORTHO05D004667 1.6e-166 590.5 649 50.5
Zm00001eb115370 Zea mays HOM05D004114 ORTHO05D004667 1.6e-163 580.5 626 51.0
Psat3g081440 Pisum sativum HOM05D004114 ORTHO05D004667 1.1e-159 567.8 405 73.8
TAR636G2716 Trochodendron aralioides HOM05D004114 ORTHO05D004667 3.9e-149 532.7 402 66.9
SEGI_01130 Sequoiadendron giganteum HOM05D004114 ORTHO05D004667 9.6e-148 528.1 648 45.8
Mapoly0179s0020 Marchantia polymorpha HOM05D004114 ORTHO05D004667 1.1e-143 514.6 645 44.8
Cpa.g.sc84.54 Carica papaya HOM05D004114 ORTHO05D004667 1.9e-140 503.8 436 61.2
Zm00001eb166150 Zea mays HOM05D004114 ORTHO05D004667 1.3e-139 501.1 626 46.6
Pp3c15_7590 Physcomitrium patens HOM05D004114 ORTHO05D004667 3.2e-135 486.5 635 43.5
Pp3c9_10010 Physcomitrium patens HOM05D004114 ORTHO05D004667 1.3e-133 481.1 635 43.3
SMO347G0278 Selaginella moellendorffii HOM05D004114 ORTHO05D004667 3.3e-132 476.5 646 43.3
AagrBONN_evm.TU.Sc2ySwM_340.1837 Anthoceros agrestis HOM05D004114 ORTHO05D004667 4.3e-132 476.1 646 40.9
Lj1A330G26 Lonicera japonica HOM05D004114 ORTHO05D004667 1.1e-122 444.9 406 61.3
Psat4g064240 Pisum sativum HOM05D004114 ORTHO05D004667 9.1e-106 388.7 461 52.1
BcaC01g01258 Brassica carinata HOM05D004114 ORTHO05D004667 7.0e-90 335.9 365 52.1
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 1.3e-88 331.6 259 67.2
Actinidia06341 Actinidia chinensis HOM05D004114 ORTHO05D004667 6.5e-88 329.3 245 67.3
Lj1A330G24 Lonicera japonica HOM05D004114 ORTHO05D004667 4.4e-84 316.6 254 63.4
CBR_g56096 Chara braunii HOM05D004114 ORTHO05D004667 5.2e-69 266.5 432 40.3
C03p89880 Brassica napus HOM05D004114 ORTHO05D004667 2.0e-68 264.6 380 45.0
Psat5g252640 Pisum sativum HOM05D004114 ORTHO05D004667 4.1e-66 256.9 252 57.9
BolC3t21309H Brassica oleracea HOM05D004114 ORTHO05D004667 2.1e-62 244.6 362 44.2
TAR636G0924 Trochodendron aralioides HOM05D004114 ORTHO05D004667 4.0e-61 240.4 206 62.6
arahy.Tifrunner.gnm1.ann1.MJQJ0M Arachis hypogaea HOM05D004114 ORTHO05D004667 6.6e-56 223.0 203 61.6
Cpa.g.sc84.55 Carica papaya HOM05D004114 ORTHO05D004667 1.4e-50 205.3 202 57.4
C03p89900 Brassica napus HOM05D004114 ORTHO05D004667 3.2e-50 204.1 306 43.8
BcaC08g43303 Brassica carinata HOM05D004114 ORTHO05D004667 1.6e-49 201.8 291 43.3
FAN23G2589 Fragaria x ananassa HOM05D004114 ORTHO05D004667 4.0e-45 187.2 133 71.4
arahy.Tifrunner.gnm1.ann1.HDR10P Arachis hypogaea HOM05D004114 ORTHO05D004667 3.5e-41 174.1 187 54.5
BraA08t32330Z Brassica rapa HOM05D004114 ORTHO05D004667 6.9e-37 159.8 257 39.3
Os11g0638900 Oryza sativa ssp. japonica HOM05D004114 ORTHO05D004667 4.4e-36 157.1 175 46.3
Actinidia39399 Actinidia chinensis HOM05D004114 ORTHO05D004667 1.2e-33 149.1 236 44.1
Cre16.g664750 Chlamydomonas reinhardtii HOM05D004114 ORTHO05D004667 1.5e-31 142.1 603 25.4
FvH4_1g30480 Fragaria vesca HOM05D001826 ORTHO05D015538 2.8e-30 137.9 96 74.0
Oeu054838.1 Olea europaea HOM05D004114 ORTHO05D004667 1.3e-27 129.0 110 60.0
Haze_23136 Corylus avellana HOM05D004114 ORTHO05D004667 2.9e-27 127.9 93 64.5
FAN19G0092 Fragaria x ananassa HOM05D004114 ORTHO05D004667 4.6e-25 120.6 134 54.5
FAN06G1142 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.3e-24 119.0 132 53.0
FAN26G0366 Fragaria x ananassa HOM05D004114 ORTHO05D004667 6.7e-24 116.7 132 54.5
FvH4_1g27340 Fragaria vesca HOM05D004114 ORTHO05D004667 8.7e-24 116.3 164 47.0
FvH4_1g27570 Fragaria vesca HOM05D004114 ORTHO05D004667 2.1e-22 111.7 78 74.4
FvH4_7g05120 Fragaria vesca HOM05D004114 ORTHO05D004667 1.1e-21 109.4 86 66.3
Actinidia06340 Actinidia chinensis HOM05D004114 ORTHO05D004667 6.5e-19 100.1 117 49.6
FAN28G1325 Fragaria x ananassa HOM05D004114 ORTHO05D004667 3.2e-18 97.8 69 73.9
FAN19G1745 Fragaria x ananassa HOM05D004114 ORTHO05D004667 9.3e-18 96.3 67 76.1
arahy.Tifrunner.gnm1.ann1.LY7CXU Arachis hypogaea HOM05D004114 ORTHO05D004667 2.1e-17 95.1 69 68.1
Sabra16G0157900 Salix brachista HOM05D004114 ORTHO05D004667 5.1e-16 90.5 72 61.1
Psat1g158360 Pisum sativum HOM05D000344 ORTHO05D025701 6.3e-14 83.6 64 67.2
arahy.Tifrunner.gnm1.ann1.WKB59G Arachis hypogaea HOM05D004114 ORTHO05D004667 1.8e-13 82.0 64 62.5
A08p02990 Brassica napus HOM05D004114 ORTHO05D004667 5.3e-13 80.5 82 53.7
arahy.Tifrunner.gnm1.ann1.KKW1YJ Arachis hypogaea HOM05D004114 ORTHO05D004667 7.6e-12 76.6 46 78.3
C03p89890 Brassica napus HOM05D004114 ORTHO05D004667 6.5e-11 73.6 68 51.5
Zm00001eb110990 Zea mays HOM05D000534 ORTHO05D000389 5.5e-10 70.5 64 57.8
Cfa026112 Carpinus fangiana HOM05D004114 ORTHO05D125150 1.3e-08 65.9 161 28.6
arahy.Tifrunner.gnm1.ann1.JG00WY Arachis hypogaea HOM05D004114 ORTHO05D004667 1.9e-07 62.0 48 62.5
C05p12260 Brassica napus HOM05D004114 ORTHO05D024134 1.9e-07 62.0 79 50.6
EL10Ac3g06409 Beta vulgaris HOM05D004114 ORTHO05D004667 7.4e-07 60.1 54 50.0
BcaB04g17225 Brassica carinata HOM05D004114 ORTHO05D004667 7.4e-07 60.1 52 57.7
BolC2t10474H Brassica oleracea HOM05D004114 ORTHO05D024134 9.7e-07 59.7 67 52.2
BolC2t10479H Brassica oleracea HOM05D004114 ORTHO05D024134 9.7e-07 59.7 67 52.2
Dinv18208 Davidia involucrata HOM05D000103 ORTHO05D000049 9.7e-07 59.7 51 60.8


User provided reference genes

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